| Literature DB >> 21837054 |
Natalia V Tsaryk1, Anatolij V Dudko, Alexandra N Kozachkova, Vasily I Pekhnyo.
Abstract
The asymmetric unit of the second polymorph of the title compound, C(2)H(9)NO(6)P(2), contains one mol-ecule existing as a zwitterion. The N atom of the ammonio group is protonated and one of the phospho-nic acid groups is deprotonated. Bond lengths and angles are similar in both polymorphs. Besides the differences in cell parameters, the most significant structural difference between this structure and that of the first polymorph [Dudko, Bon, Kozachkova, Tsarik & Pekhno (2008 ▶), Ukr. Khim. Zh.74, 104-106] is the presence of strong symmetric hydrogen bonds between neighbouring phospho-nate groups. H atoms involved in these hydrogen bonds are located at inversion centres and O⋯O distances are observed in the range 2.458 (5)-2.523 (5) Å. These bonds and additional O-H⋯O and N-H⋯O hydrogen bonds inter-link the mol-ecules, giving a three-dimensional supromolecular network.Entities:
Year: 2011 PMID: 21837054 PMCID: PMC3151912 DOI: 10.1107/S1600536811022239
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C2H9NO6P2 | |
| Triclinic, | |
| Hall symbol: -P 1 | Melting point: 551 K |
| Mo | |
| Cell parameters from 1315 reflections | |
| θ = 3.6–25.3° | |
| α = 82.334 (10)° | µ = 0.59 mm−1 |
| β = 82.145 (9)° | |
| γ = 78.148 (10)° | Needle, colourless |
| 0.56 × 0.16 × 0.09 mm |
| Bruker APEXII CCD diffractometer | 1401 independent reflections |
| Radiation source: fine-focus sealed tube | 861 reflections with |
| graphite | |
| φ and ω scans | θmax = 26.0°, θmin = 1.8° |
| Absorption correction: multi-scan ( | |
| 4331 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1401 reflections | (Δ/σ)max < 0.001 |
| 116 parameters | Δρmax = 0.45 e Å−3 |
| 0 restraints | Δρmin = −0.43 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| P1 | 0.4512 (2) | −0.0726 (2) | 0.18108 (11) | 0.0243 (4) | |
| P2 | 0.2798 (2) | 0.2733 (2) | 0.36756 (11) | 0.0266 (4) | |
| O1 | 0.3269 (6) | −0.1949 (6) | 0.1024 (3) | 0.0327 (9) | |
| H1O | 0.337 (11) | −0.133 (11) | 0.034 (5) | 0.049* | |
| O2 | 0.6470 (5) | 0.0492 (6) | 0.1152 (3) | 0.0337 (9) | |
| O3 | 0.5438 (7) | −0.2366 (6) | 0.2838 (4) | 0.0475 (11) | |
| H3O | 0.531 (12) | −0.379 (12) | 0.301 (6) | 0.071* | |
| O4 | 0.5260 (5) | 0.3445 (5) | 0.3268 (3) | 0.0236 (8) | |
| O5 | 0.2923 (6) | 0.0865 (7) | 0.4724 (3) | 0.0344 (9) | |
| H5O | 0.5000 | 0.0000 | 0.5000 | 0.052* | |
| O6 | 0.0723 (6) | 0.4792 (7) | 0.3914 (3) | 0.0421 (10) | |
| H6O | 0.0000 | 0.5000 | 0.5000 | 0.063* | |
| N1 | −0.0104 (8) | 0.0192 (9) | 0.2928 (4) | 0.0287 (11) | |
| H1A | −0.086 (10) | −0.025 (9) | 0.237 (5) | 0.043* | |
| H1B | −0.151 (10) | 0.102 (10) | 0.316 (5) | 0.043* | |
| H1C | 0.030 (10) | −0.091 (10) | 0.342 (5) | 0.043* | |
| C1 | 0.1979 (8) | 0.1433 (8) | 0.2439 (4) | 0.0195 (10) | |
| C2 | 0.1069 (9) | 0.3297 (8) | 0.1441 (4) | 0.0278 (12) | |
| H2A | 0.0827 | 0.2556 | 0.0776 | 0.042* | |
| H2B | 0.2276 | 0.4265 | 0.1191 | 0.042* | |
| H2C | −0.0464 | 0.4235 | 0.1730 | 0.042* |
| P1 | 0.0236 (7) | 0.0195 (7) | 0.0316 (7) | −0.0033 (5) | −0.0072 (6) | −0.0066 (6) |
| P2 | 0.0204 (7) | 0.0387 (9) | 0.0230 (7) | −0.0080 (6) | −0.0030 (5) | −0.0074 (6) |
| O1 | 0.038 (2) | 0.028 (2) | 0.037 (2) | −0.0124 (17) | −0.0077 (18) | −0.0095 (17) |
| O2 | 0.0203 (18) | 0.045 (2) | 0.042 (2) | −0.0155 (16) | 0.0069 (16) | −0.0208 (18) |
| O3 | 0.065 (3) | 0.016 (2) | 0.068 (3) | −0.0036 (19) | −0.042 (2) | 0.002 (2) |
| O4 | 0.0182 (16) | 0.0200 (18) | 0.0344 (19) | −0.0022 (13) | −0.0056 (14) | −0.0091 (15) |
| O5 | 0.0272 (19) | 0.055 (2) | 0.0241 (18) | −0.0172 (17) | −0.0077 (15) | 0.0035 (17) |
| O6 | 0.0231 (19) | 0.067 (3) | 0.034 (2) | 0.0124 (18) | −0.0057 (16) | −0.0270 (19) |
| N1 | 0.017 (2) | 0.036 (3) | 0.033 (3) | −0.009 (2) | −0.006 (2) | 0.005 (2) |
| C1 | 0.016 (2) | 0.022 (3) | 0.022 (2) | −0.0064 (19) | −0.0040 (19) | 0.000 (2) |
| C2 | 0.031 (3) | 0.023 (3) | 0.027 (3) | 0.000 (2) | −0.007 (2) | −0.001 (2) |
| P1—O2 | 1.490 (3) | O5—H5O | 1.229 (0) |
| P1—O3 | 1.493 (4) | O6—H6O | 1.261 (0) |
| P1—O1 | 1.533 (4) | N1—C1 | 1.502 (6) |
| P1—C1 | 1.831 (5) | N1—H1A | 0.90 (6) |
| P2—O4 | 1.510 (3) | N1—H1B | 0.86 (6) |
| P2—O5 | 1.512 (4) | N1—H1C | 0.82 (6) |
| P2—O6 | 1.520 (3) | C1—C2 | 1.534 (6) |
| P2—C1 | 1.840 (4) | C2—H2A | 0.9600 |
| O1—H1O | 0.81 (6) | C2—H2B | 0.9600 |
| O3—H3O | 0.85 (7) | C2—H2C | 0.9600 |
| O2—P1—O3 | 111.7 (2) | C1—N1—H1B | 118 (4) |
| O2—P1—O1 | 114.3 (2) | H1A—N1—H1B | 87 (4) |
| O3—P1—O1 | 110.8 (2) | C1—N1—H1C | 113 (4) |
| O2—P1—C1 | 109.0 (2) | H1A—N1—H1C | 110 (5) |
| O3—P1—C1 | 106.5 (2) | H1B—N1—H1C | 111 (6) |
| O1—P1—C1 | 103.86 (19) | N1—C1—C2 | 107.8 (4) |
| O4—P2—O5 | 112.46 (18) | N1—C1—P1 | 107.2 (3) |
| O4—P2—O6 | 112.8 (2) | C2—C1—P1 | 109.4 (3) |
| O5—P2—O6 | 111.7 (2) | N1—C1—P2 | 107.4 (3) |
| O4—P2—C1 | 107.07 (18) | C2—C1—P2 | 111.7 (3) |
| O5—P2—C1 | 106.2 (2) | P1—C1—P2 | 113.1 (2) |
| O6—P2—C1 | 105.98 (19) | C1—C2—H2A | 109.5 |
| P1—O1—H1O | 110 (4) | C1—C2—H2B | 109.5 |
| P1—O3—H3O | 128 (4) | H2A—C2—H2B | 109.5 |
| P2—O5—H5O | 115.9 (0) | C1—C2—H2C | 109.5 |
| P2—O6—H6O | 115.1 (0) | H2A—C2—H2C | 109.5 |
| C1—N1—H1A | 115 (3) | H2B—C2—H2C | 109.5 |
| O2—P1—C1—N1 | 171.5 (3) | O4—P2—C1—N1 | 166.1 (3) |
| O3—P1—C1—N1 | −67.9 (3) | O5—P2—C1—N1 | 45.8 (3) |
| O1—P1—C1—N1 | 49.2 (3) | O6—P2—C1—N1 | −73.2 (4) |
| O2—P1—C1—C2 | 54.9 (4) | O4—P2—C1—C2 | −76.0 (3) |
| O3—P1—C1—C2 | 175.5 (3) | O5—P2—C1—C2 | 163.7 (3) |
| O1—P1—C1—C2 | −67.4 (3) | O6—P2—C1—C2 | 44.7 (4) |
| O2—P1—C1—P2 | −70.3 (3) | O4—P2—C1—P1 | 48.0 (3) |
| O3—P1—C1—P2 | 50.3 (3) | O5—P2—C1—P1 | −72.4 (3) |
| O1—P1—C1—P2 | 167.4 (2) | O6—P2—C1—P1 | 168.7 (2) |
| H··· | ||||
| O1—H1O···O2i | 0.81 (6) | 1.70 (6) | 2.507 (5) | 170 (6) |
| O3—H3O···O4ii | 0.85 (7) | 1.63 (7) | 2.475 (5) | 175 (7) |
| O5—H5O···O5iii | 1.23 (1) | 1.23 (1) | 2.458 (5) | 180 (0) |
| O6—H6O···O6iv | 1.26 (1) | 1.26 (1) | 2.523 (6) | 180.(1) |
| N1—H1A···O2v | 0.90 (6) | 2.11 (6) | 2.929 (6) | 150 (5) |
| N1—H1B···O4v | 0.86 (6) | 2.06 (6) | 2.896 (5) | 165 (5) |
| N1—H1C···O6ii | 0.82 (6) | 2.50 (6) | 3.196 (6) | 145 (5) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1O⋯O2i | 0.81 (6) | 1.70 (6) | 2.507 (5) | 170 (6) |
| O3—H3O⋯O4ii | 0.85 (7) | 1.63 (7) | 2.475 (5) | 175 (7) |
| O5—H5O⋯O5iii | 1.23 (1) | 1.23 (1) | 2.458 (5) | 180 (0) |
| O6—H6O⋯O6iv | 1.26 (1) | 1.26 (1) | 2.523 (6) | 180 (1) |
| N1—H1 | 0.90 (6) | 2.11 (6) | 2.929 (6) | 150 (5) |
| N1—H1 | 0.86 (6) | 2.06 (6) | 2.896 (5) | 165 (5) |
| N1—H1 | 0.82 (6) | 2.50 (6) | 3.196 (6) | 145 (5) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .