Literature DB >> 21836984

(±)-4a-(4-Nitro-benz-yl)-2,3,4,4a-tetra-hydro-1H-carbazole.

Hua Zhou, Shi-Yi Ou, Ri-An Yan, Xiao-Jian Liao.   

Abstract

The title mol-ecule, C(19)H(18)N(2)O(2), is built up from three fused rings, viz. phenyl, pyrrole and cyclo-hexane, linked to a nitro-benzyl group. The C atom bearing the nitro-benzyl group is chiral and the compound is a racemate (R/S). The dihedral angle between the nitro-benzyl and indole rings is 57.49 (5)°. The cyclo-hexane ring adopts a slightly distorted chair conformation.

Entities:  

Year:  2011        PMID: 21836984      PMCID: PMC3152074          DOI: 10.1107/S1600536811020277

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biocativity of carbazole derivatives, see: Nakahara et al. (2002 ▶); Yukari et al. (2001 ▶, 2003 ▶). For crystallographic studies of carbazole derivatives, see: Gunaseelan et al. (2007 ▶); Murugavel et al. (2008 ▶).

Experimental

Crystal data

C19H18N2O2 M = 306.35 Monoclinic, a = 8.7266 (3) Å b = 16.6916 (6) Å c = 11.0857 (4) Å β = 105.790 (4)° V = 1553.82 (10) Å3 Z = 4 Cu Kα radiation μ = 0.69 mm−1 T = 295 K 0.5 × 0.4 × 0.3 mm

Data collection

Agilent Xcalibur Sapphire3 Gemini ultra diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.967, T max = 1.000 4772 measured reflections 2479 independent reflections 2089 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.116 S = 1.04 2479 reflections 208 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.27 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811020277/dn2687sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811020277/dn2687Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811020277/dn2687Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H18N2O2F(000) = 648
Mr = 306.35Dx = 1.310 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.5418 Å
a = 8.7266 (3) ÅCell parameters from 2290 reflections
b = 16.6916 (6) Åθ = 4.1–63.3°
c = 11.0857 (4) ŵ = 0.69 mm1
β = 105.790 (4)°T = 295 K
V = 1553.82 (10) Å3Block, colourless
Z = 40.5 × 0.4 × 0.3 mm
Agilent Xcalibur Sapphire3 Gemini ultra diffractometer2479 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source2089 reflections with I > 2σ(I)
mirrorRint = 0.016
Detector resolution: 16.0288 pixels mm-1θmax = 63.4°, θmin = 4.9°
ω scansh = −9→10
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −19→15
Tmin = 0.967, Tmax = 1.000l = −12→12
4772 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.053P)2 + 0.3423P] where P = (Fo2 + 2Fc2)/3
2479 reflections(Δ/σ)max < 0.001
208 parametersΔρmax = 0.34 e Å3
0 restraintsΔρmin = −0.27 e Å3
Experimental. Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm, CrysAlisPro (Agilent Technologies, 2010)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N1−0.00300 (17)0.11252 (9)0.00877 (13)0.0508 (4)
N2−0.40823 (18)−0.06469 (10)0.32518 (16)0.0606 (4)
O1−0.45120 (19)−0.11644 (11)0.24495 (19)0.0981 (6)
O2−0.4868 (2)−0.04523 (13)0.39422 (19)0.1103 (7)
C2−0.26031 (19)−0.02163 (10)0.33128 (15)0.0474 (4)
C4−0.0688 (2)0.26406 (11)0.22420 (17)0.0546 (5)
H4−0.01330.28420.30200.066*
C5−0.1638 (2)−0.04885 (11)0.26058 (16)0.0522 (4)
H5−0.1906−0.09460.21150.063*
C60.01239 (19)0.06249 (10)0.33455 (14)0.0447 (4)
C7−0.0266 (2)−0.00705 (11)0.26372 (16)0.0517 (4)
H70.0409−0.02560.21780.062*
C8−0.0060 (2)0.20306 (10)0.16888 (15)0.0457 (4)
C90.14637 (19)0.15610 (11)0.21010 (15)0.0465 (4)
C10−0.2232 (2)0.04547 (11)0.40556 (16)0.0512 (4)
H10−0.28830.06210.45470.061*
C11−0.0874 (2)0.08749 (11)0.40559 (15)0.0490 (4)
H11−0.06200.13350.45420.059*
C120.2623 (2)0.05042 (12)0.08696 (19)0.0601 (5)
H12A0.23640.02370.00630.072*
H12B0.28320.00990.15210.072*
C13−0.09041 (19)0.17322 (10)0.05232 (15)0.0471 (4)
C140.1591 (2)0.10996 (11)0.33379 (15)0.0503 (4)
H14A0.24920.07370.34870.060*
H14B0.18030.14800.40240.060*
C150.1269 (2)0.10175 (10)0.09656 (15)0.0477 (4)
C160.2976 (2)0.20659 (12)0.22068 (19)0.0603 (5)
H16A0.27770.24420.15150.072*
H16B0.32140.23720.29800.072*
C17−0.2169 (2)0.29487 (12)0.1613 (2)0.0623 (5)
H17−0.25970.33700.19650.075*
C18−0.3009 (2)0.26371 (13)0.04740 (19)0.0636 (5)
H18−0.40110.28420.00790.076*
C200.4094 (2)0.10320 (15)0.1016 (2)0.0743 (6)
H20A0.50130.06950.10600.089*
H20B0.39410.13750.02860.089*
C22−0.2390 (2)0.20246 (13)−0.00932 (17)0.0588 (5)
H22−0.29570.1817−0.08640.071*
C230.4413 (2)0.15502 (15)0.2191 (2)0.0717 (6)
H23A0.46750.12080.29260.086*
H23B0.53210.18940.22300.086*
U11U22U33U12U13U23
N10.0533 (8)0.0569 (9)0.0419 (7)−0.0040 (7)0.0123 (6)−0.0011 (6)
N20.0532 (9)0.0588 (10)0.0678 (10)−0.0018 (8)0.0132 (8)0.0018 (8)
O10.0780 (11)0.0826 (11)0.1356 (16)−0.0255 (9)0.0322 (10)−0.0397 (11)
O20.0896 (12)0.1405 (18)0.1213 (14)−0.0460 (12)0.0636 (11)−0.0443 (13)
C20.0457 (9)0.0468 (9)0.0473 (9)0.0012 (7)0.0087 (7)0.0058 (8)
C40.0638 (11)0.0508 (10)0.0518 (10)−0.0033 (9)0.0201 (8)−0.0001 (8)
C50.0608 (11)0.0441 (10)0.0511 (10)−0.0018 (8)0.0143 (8)−0.0053 (8)
C60.0473 (9)0.0479 (9)0.0363 (8)0.0040 (7)0.0070 (7)0.0062 (7)
C70.0590 (11)0.0489 (10)0.0510 (10)0.0048 (8)0.0214 (8)−0.0013 (8)
C80.0490 (9)0.0456 (9)0.0435 (8)−0.0043 (7)0.0145 (7)0.0031 (7)
C90.0444 (9)0.0513 (10)0.0426 (9)−0.0050 (7)0.0097 (7)−0.0003 (7)
C100.0499 (10)0.0577 (11)0.0475 (9)0.0047 (8)0.0160 (8)−0.0008 (8)
C110.0550 (10)0.0481 (10)0.0420 (8)0.0014 (8)0.0102 (7)−0.0042 (7)
C120.0594 (11)0.0656 (12)0.0577 (11)0.0043 (9)0.0203 (9)−0.0031 (9)
C130.0484 (9)0.0517 (10)0.0415 (9)−0.0037 (8)0.0124 (7)0.0057 (7)
C140.0493 (9)0.0576 (11)0.0410 (9)−0.0017 (8)0.0070 (7)0.0018 (8)
C150.0491 (9)0.0507 (10)0.0445 (9)−0.0049 (8)0.0151 (7)0.0012 (7)
C160.0561 (11)0.0632 (12)0.0595 (11)−0.0159 (9)0.0121 (9)−0.0002 (9)
C170.0689 (12)0.0556 (11)0.0716 (12)0.0104 (9)0.0346 (10)0.0123 (10)
C180.0522 (11)0.0729 (13)0.0675 (12)0.0094 (10)0.0196 (9)0.0230 (11)
C200.0561 (12)0.0945 (16)0.0787 (14)0.0032 (11)0.0295 (10)0.0032 (12)
C220.0514 (10)0.0734 (13)0.0487 (10)−0.0020 (9)0.0090 (8)0.0098 (9)
C230.0458 (10)0.0912 (16)0.0780 (14)−0.0130 (10)0.0165 (9)0.0027 (12)
N1—C131.429 (2)C10—C111.377 (2)
N1—C151.290 (2)C11—H110.9300
C2—N21.463 (2)C12—H12A0.9700
C2—C51.375 (2)C12—H12B0.9700
C2—C101.376 (2)C12—C151.487 (2)
N2—O11.223 (2)C12—C201.529 (3)
N2—O21.203 (2)C13—C221.380 (2)
C4—H40.9300C14—H14A0.9700
C4—C81.377 (2)C14—H14B0.9700
C4—C171.389 (3)C16—H16A0.9700
C5—H50.9300C16—H16B0.9700
C5—C71.378 (2)C16—C231.525 (3)
C6—C71.391 (2)C17—H170.9300
C6—C111.387 (2)C17—C181.378 (3)
C6—C141.508 (2)C18—H180.9300
C7—H70.9300C18—C221.384 (3)
C8—C91.503 (2)C20—H20A0.9700
C8—C131.394 (2)C20—H20B0.9700
C9—C141.550 (2)C20—C231.525 (3)
C9—C151.523 (2)C22—H220.9300
C9—C161.543 (2)C23—H23A0.9700
C10—H100.9300C23—H23B0.9700
C15—N1—C13106.51 (14)C8—C13—N1111.75 (15)
C5—C2—N2118.76 (16)C22—C13—N1126.84 (16)
C5—C2—C10121.97 (16)C22—C13—C8121.40 (17)
C10—C2—N2119.26 (16)C6—C14—C9114.16 (13)
O1—N2—C2118.20 (17)C6—C14—H14A108.7
O2—N2—C2119.10 (17)C6—C14—H14B108.7
O2—N2—O1122.58 (18)C9—C14—H14A108.7
C8—C4—H4120.7C9—C14—H14B108.7
C8—C4—C17118.61 (18)H14A—C14—H14B107.6
C17—C4—H4120.7N1—C15—C9114.72 (15)
C2—C5—H5120.6N1—C15—C12125.36 (16)
C2—C5—C7118.76 (16)C12—C15—C9119.35 (15)
C7—C5—H5120.6C9—C16—H16A109.1
C7—C6—C14120.87 (15)C9—C16—H16B109.1
C11—C6—C7118.46 (16)H16A—C16—H16B107.9
C11—C6—C14120.67 (15)C23—C16—C9112.31 (17)
C5—C7—C6120.96 (16)C23—C16—H16A109.1
C5—C7—H7119.5C23—C16—H16B109.1
C6—C7—H7119.5C4—C17—H17119.7
C4—C8—C9132.56 (16)C18—C17—C4120.70 (19)
C4—C8—C13120.21 (16)C18—C17—H17119.7
C13—C8—C9107.22 (14)C17—C18—H18119.4
C8—C9—C14111.88 (13)C17—C18—C22121.25 (18)
C8—C9—C1599.71 (13)C22—C18—H18119.4
C8—C9—C16113.94 (15)C12—C20—H20A109.3
C15—C9—C14113.58 (14)C12—C20—H20B109.3
C15—C9—C16106.80 (14)H20A—C20—H20B107.9
C16—C9—C14110.48 (13)C23—C20—C12111.70 (16)
C2—C10—H10120.7C23—C20—H20A109.3
C2—C10—C11118.51 (16)C23—C20—H20B109.3
C11—C10—H10120.7C13—C22—C18117.80 (18)
C6—C11—H11119.4C13—C22—H22121.1
C10—C11—C6121.29 (16)C18—C22—H22121.1
C10—C11—H11119.4C16—C23—C20111.76 (16)
H12A—C12—H12B108.3C16—C23—H23A109.3
C15—C12—H12A109.9C16—C23—H23B109.3
C15—C12—H12B109.9C20—C23—H23A109.3
C15—C12—C20108.74 (17)C20—C23—H23B109.3
C20—C12—H12A109.9H23A—C23—H23B107.9
C20—C12—H12B109.9
  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Antioxidative activity of carbazoles from Murraya koenigii leaves.

Authors:  Y Tachibana; H Kikuzaki; N H Lajis; N Nakatani
Journal:  J Agric Food Chem       Date:  2001-11       Impact factor: 5.279

3.  Antimutagenicity of some edible Thai plants, and a bioactive carbazole alkaloid, mahanine, isolated from Micromelum minutum.

Authors:  Kazuhiko Nakahara; Gassinee Trakoontivakorn; Najeeb S Alzoreky; Hiroshi Ono; Mayumi Onishi-Kameyama; Mitsuru Yoshida
Journal:  J Agric Food Chem       Date:  2002-08-14       Impact factor: 5.279

4.  Comparison of antioxidative properties of carbazole alkaloids from Murraya koenigii leaves.

Authors:  Yukari Tachibana; Hiroe Kikuzaki; Nordin Hj Lajis; Nobuji Nakatani
Journal:  J Agric Food Chem       Date:  2003-10-22       Impact factor: 5.279

5.  2,3,4,9-Tetra-hydro-1H-carbazole.

Authors:  S Murugavel; P S Kannan; A Subbiahpandi; T Surendiran; S Balasubramanian
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-26
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.