| Literature DB >> 21581401 |
S Murugavel, P S Kannan, A Subbiahpandi, T Surendiran, S Balasubramanian.
Abstract
In the title compound, C(12)H(13)N, two methyl-ene C atoms of the cyclo-hexene ring are disordered over two sites with occupancies of 0.591 (10) and 0.409 (10); both disorder components adopt half-chair conformations. The crystal structure is stabilized by inter-molecular N-H⋯π and C-H⋯π inter-actions.Entities:
Year: 2008 PMID: 21581401 PMCID: PMC2960078 DOI: 10.1107/S1600536808038713
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H13N | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 1778 reflections |
| θ = 2.1–31.1º | |
| µ = 0.07 mm−1 | |
| Block, colourless | |
| 0.26 × 0.15 × 0.15 mm |
| Bruker Kappa APEXII area-detector diffractometer | 1323 reflections with |
| Radiation source: fine-focus sealed tube | |
| Monochromator: graphite | θmax = 31.1º |
| θmin = 2.1º | |
| ω and φ scans | |
| Absorption correction: none | |
| 13269 measured reflections | |
| 1777 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max = 0.001 | |
| 1777 reflections | Δρmax = 0.14 e Å−3 |
| 137 parameters | Δρmin = −0.20 e Å−3 |
| 15 restraints | Extinction correction: none |
| Primary atom site location: structure-invariant direct methods |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| N1 | 0.7448 (2) | 0.5987 (2) | 0.95685 (8) | 0.0547 (4) | |
| H1A | 0.8656 | 0.6513 | 0.9495 | 0.066* | |
| C1 | 0.3210 (3) | 0.4486 (2) | 1.06567 (10) | 0.0557 (5) | |
| H1 | 0.1945 | 0.3846 | 1.0604 | 0.067* | |
| C2 | 0.3803 (4) | 0.5087 (3) | 1.12920 (10) | 0.0634 (5) | |
| H2 | 0.2921 | 0.4854 | 1.1670 | 0.076* | |
| C3 | 0.5689 (4) | 0.6033 (3) | 1.13826 (10) | 0.0619 (5) | |
| H3 | 0.6046 | 0.6419 | 1.1820 | 0.074* | |
| C4 | 0.7035 (3) | 0.6410 (2) | 1.08415 (10) | 0.0568 (5) | |
| H4 | 0.8298 | 0.7045 | 1.0904 | 0.068* | |
| C5 | 0.6448 (3) | 0.5811 (2) | 1.01954 (9) | 0.0457 (4) | |
| C6 | 0.4535 (3) | 0.4849 (2) | 1.00903 (9) | 0.0429 (4) | |
| C7 | 0.4433 (3) | 0.4464 (2) | 0.93742 (8) | 0.0429 (4) | |
| C8 | 0.6210 (3) | 0.5184 (2) | 0.90741 (9) | 0.0473 (4) | |
| C9 | 0.6730 (3) | 0.5153 (3) | 0.83301 (10) | 0.0668 (6) | |
| H9A | 0.8252 | 0.4841 | 0.8267 | 0.080* | 0.591 (10) |
| H9B | 0.6521 | 0.6267 | 0.8138 | 0.080* | 0.591 (10) |
| H9C | 0.7893 | 0.4371 | 0.8240 | 0.080* | 0.409 (10) |
| H9D | 0.7193 | 0.6249 | 0.8182 | 0.080* | 0.409 (10) |
| C10A | 0.5287 (9) | 0.3918 (9) | 0.7958 (4) | 0.0674 (15) | 0.591 (10) |
| H10A | 0.5876 | 0.2795 | 0.8019 | 0.101* | 0.591 (10) |
| H10B | 0.5318 | 0.4171 | 0.7470 | 0.101* | 0.591 (10) |
| C11A | 0.2927 (8) | 0.3943 (9) | 0.8204 (2) | 0.0638 (13) | 0.591 (10) |
| H11A | 0.2083 | 0.3133 | 0.7941 | 0.096* | 0.591 (10) |
| H11B | 0.2308 | 0.5049 | 0.8122 | 0.096* | 0.591 (10) |
| C10B | 0.4709 (17) | 0.4587 (13) | 0.7953 (5) | 0.076 (2) | 0.409 (10) |
| H10C | 0.3699 | 0.5527 | 0.7924 | 0.114* | 0.409 (10) |
| H10D | 0.5117 | 0.4282 | 0.7487 | 0.114* | 0.409 (10) |
| C11B | 0.3543 (15) | 0.3125 (11) | 0.8276 (3) | 0.0651 (19) | 0.409 (10) |
| H11C | 0.2313 | 0.2806 | 0.7989 | 0.098* | 0.409 (10) |
| H11D | 0.4534 | 0.2173 | 0.8300 | 0.098* | 0.409 (10) |
| C12 | 0.2741 (3) | 0.3519 (3) | 0.89757 (10) | 0.0579 (5) | |
| H12A | 0.1293 | 0.3817 | 0.9141 | 0.069* | 0.591 (10) |
| H12B | 0.2943 | 0.2320 | 0.9043 | 0.069* | 0.591 (10) |
| H12C | 0.1428 | 0.4179 | 0.8941 | 0.069* | 0.409 (10) |
| H12D | 0.2390 | 0.2494 | 0.9212 | 0.069* | 0.409 (10) |
| N1 | 0.0455 (8) | 0.0620 (9) | 0.0565 (9) | −0.0161 (8) | 0.0044 (7) | 0.0019 (7) |
| C1 | 0.0518 (10) | 0.0556 (11) | 0.0597 (11) | −0.0079 (9) | 0.0078 (9) | 0.0039 (9) |
| C2 | 0.0707 (12) | 0.0693 (12) | 0.0502 (10) | 0.0015 (12) | 0.0120 (9) | 0.0040 (9) |
| C3 | 0.0752 (13) | 0.0599 (11) | 0.0507 (11) | 0.0054 (11) | −0.0054 (10) | −0.0048 (9) |
| C4 | 0.0577 (11) | 0.0495 (10) | 0.0631 (12) | −0.0038 (9) | −0.0095 (10) | −0.0022 (9) |
| C5 | 0.0447 (8) | 0.0402 (8) | 0.0522 (9) | −0.0020 (7) | −0.0005 (7) | 0.0042 (7) |
| C6 | 0.0425 (8) | 0.0374 (7) | 0.0488 (8) | 0.0012 (7) | 0.0007 (7) | 0.0036 (7) |
| C7 | 0.0422 (8) | 0.0379 (8) | 0.0487 (9) | 0.0013 (7) | −0.0007 (7) | 0.0010 (7) |
| C8 | 0.0440 (8) | 0.0468 (9) | 0.0511 (9) | 0.0018 (8) | 0.0023 (7) | 0.0017 (8) |
| C9 | 0.0601 (11) | 0.0876 (15) | 0.0526 (10) | −0.0017 (12) | 0.0084 (9) | 0.0054 (11) |
| C10A | 0.061 (3) | 0.082 (4) | 0.059 (2) | 0.010 (3) | 0.004 (2) | −0.007 (3) |
| C11A | 0.057 (2) | 0.076 (3) | 0.058 (2) | 0.003 (2) | −0.0071 (18) | −0.010 (2) |
| C10B | 0.084 (6) | 0.097 (6) | 0.046 (3) | 0.009 (5) | −0.008 (4) | −0.005 (4) |
| C11B | 0.071 (4) | 0.067 (4) | 0.057 (3) | 0.003 (4) | −0.011 (3) | −0.018 (3) |
| C12 | 0.0515 (10) | 0.0590 (11) | 0.0632 (11) | −0.0084 (9) | −0.0038 (9) | −0.0028 (9) |
| N1—C5 | 1.371 (2) | C9—H9B | 0.97 |
| N1—C8 | 1.379 (2) | C9—H9C | 0.96 |
| N1—H1A | 0.86 | C9—H9D | 0.96 |
| C1—C2 | 1.374 (3) | C10A—C11A | 1.519 (7) |
| C1—C6 | 1.397 (2) | C10A—H10A | 0.97 |
| C1—H1 | 0.93 | C10A—H10B | 0.97 |
| C2—C3 | 1.387 (3) | C11A—C12 | 1.542 (5) |
| C2—H2 | 0.93 | C11A—H11A | 0.97 |
| C3—C4 | 1.369 (3) | C11A—H11B | 0.97 |
| C3—H3 | 0.93 | C10B—C11B | 1.501 (10) |
| C4—C5 | 1.391 (3) | C10B—H10C | 0.97 |
| C4—H4 | 0.93 | C10B—H10D | 0.97 |
| C5—C6 | 1.411 (2) | C11B—C12 | 1.480 (6) |
| C6—C7 | 1.427 (2) | C11B—H11C | 0.97 |
| C7—C8 | 1.359 (2) | C11B—H11D | 0.97 |
| C7—C12 | 1.494 (2) | C12—H12A | 0.97 |
| C8—C9 | 1.482 (3) | C12—H12B | 0.97 |
| C9—C10B | 1.505 (9) | C12—H12C | 0.96 |
| C9—C10A | 1.505 (6) | C12—H12D | 0.96 |
| C9—H9A | 0.97 | ||
| C5—N1—C8 | 109.19 (14) | H9C—C9—H9D | 108.3 |
| C5—N1—H1A | 125.4 | C9—C10A—C11A | 113.3 (5) |
| C8—N1—H1A | 125.4 | C9—C10A—H10A | 108.9 |
| C2—C1—C6 | 118.99 (18) | C11A—C10A—H10A | 108.9 |
| C2—C1—H1 | 120.5 | C9—C10A—H10B | 108.9 |
| C6—C1—H1 | 120.5 | C11A—C10A—H10B | 108.9 |
| C1—C2—C3 | 121.49 (19) | H10A—C10A—H10B | 107.7 |
| C1—C2—H2 | 119.3 | C10A—C11A—C12 | 112.0 (5) |
| C3—C2—H2 | 119.3 | C10A—C11A—H11A | 109.2 |
| C4—C3—C2 | 121.30 (18) | C12—C11A—H11A | 109.2 |
| C4—C3—H3 | 119.3 | C10A—C11A—H11B | 109.2 |
| C2—C3—H3 | 119.3 | C12—C11A—H11B | 109.2 |
| C3—C4—C5 | 117.72 (18) | H11A—C11A—H11B | 107.9 |
| C3—C4—H4 | 121.1 | C11B—C10B—C9 | 114.6 (7) |
| C5—C4—H4 | 121.1 | C11B—C10B—H10C | 108.6 |
| N1—C5—C4 | 130.84 (17) | C9—C10B—H10C | 108.6 |
| N1—C5—C6 | 107.17 (15) | C11B—C10B—H10D | 108.6 |
| C4—C5—C6 | 121.99 (17) | C9—C10B—H10D | 108.6 |
| C1—C6—C5 | 118.50 (16) | H10C—C10B—H10D | 107.6 |
| C1—C6—C7 | 134.42 (16) | C12—C11B—C10B | 112.2 (7) |
| C5—C6—C7 | 107.08 (15) | C12—C11B—H11C | 109.2 |
| C8—C7—C6 | 107.10 (14) | C10B—C11B—H11C | 109.2 |
| C8—C7—C12 | 122.77 (16) | C12—C11B—H11D | 109.2 |
| C6—C7—C12 | 130.10 (15) | C10B—C11B—H11D | 109.2 |
| C7—C8—N1 | 109.45 (15) | H11C—C11B—H11D | 107.9 |
| C7—C8—C9 | 125.70 (17) | C11B—C12—C7 | 110.8 (3) |
| N1—C8—C9 | 124.85 (17) | C7—C12—C11A | 110.1 (2) |
| C8—C9—C10B | 107.8 (4) | C11B—C12—H12A | 131.1 |
| C8—C9—C10A | 110.8 (3) | C7—C12—H12A | 109.6 |
| C8—C9—H9A | 109.5 | C11A—C12—H12A | 109.6 |
| C10B—C9—H9A | 130.4 | C11B—C12—H12B | 82.7 |
| C10A—C9—H9A | 109.5 | C7—C12—H12B | 109.6 |
| C8—C9—H9B | 109.5 | C11A—C12—H12B | 109.6 |
| C10B—C9—H9B | 88.7 | H12A—C12—H12B | 108.1 |
| C10A—C9—H9B | 109.5 | C11B—C12—H12C | 109.1 |
| H9A—C9—H9B | 108.1 | C7—C12—H12C | 109.8 |
| C8—C9—H9C | 110.3 | C11A—C12—H12C | 82.8 |
| C10B—C9—H9C | 109.0 | H12B—C12—H12C | 130.7 |
| C10A—C9—H9C | 85.6 | C11B—C12—H12D | 109.5 |
| H9B—C9—H9C | 128.2 | C7—C12—H12D | 109.4 |
| C8—C9—H9D | 109.9 | C11A—C12—H12D | 131.9 |
| C10B—C9—H9D | 111.5 | H12A—C12—H12D | 81.1 |
| C10A—C9—H9D | 128.3 | H12C—C12—H12D | 108.1 |
| H9A—C9—H9D | 84.9 | ||
| C6—C1—C2—C3 | −0.4 (3) | C5—N1—C8—C7 | −1.0 (2) |
| C1—C2—C3—C4 | 0.1 (3) | C5—N1—C8—C9 | 177.78 (18) |
| C2—C3—C4—C5 | 0.0 (3) | C7—C8—C9—C10B | 14.1 (5) |
| C8—N1—C5—C4 | −178.92 (19) | N1—C8—C9—C10B | −164.5 (5) |
| C8—N1—C5—C6 | 0.7 (2) | C7—C8—C9—C10A | −11.7 (4) |
| C3—C4—C5—N1 | 179.77 (19) | N1—C8—C9—C10A | 169.7 (3) |
| C3—C4—C5—C6 | 0.2 (3) | C8—C9—C10A—C11A | 40.6 (8) |
| C2—C1—C6—C5 | 0.6 (3) | C10B—C9—C10A—C11A | −46.8 (11) |
| C2—C1—C6—C7 | −179.34 (19) | C9—C10A—C11A—C12 | −59.6 (9) |
| N1—C5—C6—C1 | 179.87 (15) | C8—C9—C10B—C11B | −43.8 (11) |
| C4—C5—C6—C1 | −0.4 (3) | C10A—C9—C10B—C11B | 57.5 (12) |
| N1—C5—C6—C7 | −0.20 (18) | C9—C10B—C11B—C12 | 61.8 (14) |
| C4—C5—C6—C7 | 179.48 (17) | C10B—C11B—C12—C7 | −42.9 (10) |
| C1—C6—C7—C8 | 179.52 (19) | C10B—C11B—C12—C11A | 51.4 (8) |
| C5—C6—C7—C8 | −0.39 (18) | C8—C7—C12—C11B | 14.2 (5) |
| C1—C6—C7—C12 | 1.6 (3) | C6—C7—C12—C11B | −168.1 (5) |
| C5—C6—C7—C12 | −178.35 (17) | C8—C7—C12—C11A | −17.0 (4) |
| C6—C7—C8—N1 | 0.84 (19) | C6—C7—C12—C11A | 160.7 (3) |
| C12—C7—C8—N1 | 178.98 (16) | C10A—C11A—C12—C11B | −51.7 (7) |
| C6—C7—C8—C9 | −177.92 (18) | C10A—C11A—C12—C7 | 45.1 (7) |
| C12—C7—C8—C9 | 0.2 (3) |
| H··· | ||||
| N1—H1A···Cg2i | 0.86 | 2.62 | 3.327 (1) | 140 |
| C4—H4···Cg1i | 0.93 | 2.86 | 3.645 (1) | 143 |
| C12—H12B···Cg2ii | 0.97 | 2.83 | 3.577 (2) | 135 |
| C12—H12D···Cg2ii | 0.96 | 2.72 | 3.577 (2) | 149 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.62 | 3.327 (1) | 140 |
| C4—H4⋯ | 0.93 | 2.86 | 3.645 (1) | 143 |
| C12—H12 | 0.97 | 2.83 | 3.577 (2) | 135 |
| C12—H12 | 0.96 | 2.72 | 3.577 (2) | 149 |
Symmetry codes: (i) ; (ii) .Cg1 and Cg2 are the centroids of the N1/C5–C8 and C1–C6 rings, respectively.