Literature DB >> 21836839

{N-Methyl-N'-[1-(pyridin-2-yl)ethyl-idene]ethane-1,2-diamine-κN,N',N''}-bis(thio-cyanato-κN)zinc(II).

Xian-Wen Li1.   

Abstract

In the title compound, [Zn(NCS)(2)(C(10)H(15)N(3))], the Zn atom is five-coordinated by the three N-donor atoms of the Schiff base ligand and by two N atoms from two thio-cyanate anions, forming a distorted ZnN(5) trigonal-bipyramidal coordination geometry for the metal ion. The side chain of the ligand is disordered over two sets of sites in a 0.655 (12):0.345 (12) ratio. In the crystal, mol-ecules are linked by N-H⋯S hydrogen bonds, generating [100] chains.

Entities:  

Year:  2011        PMID: 21836839      PMCID: PMC3151752          DOI: 10.1107/S1600536811019945

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of Schiff base compounds, see: Panneerselvam et al. (2005 ▶); Shi et al. (2007 ▶); Singh et al. (2006 ▶, 2007 ▶); Zhong et al. (2006 ▶). For the Schiff base complexes we reported previously, see: Li & Qiu (2008a ▶,b ▶).

Experimental

Crystal data

[Zn(NCS)2(C10H15N3)] M = 358.78 Monoclinic, a = 7.6674 (3) Å b = 14.8062 (5) Å c = 14.3766 (6) Å β = 101.853 (2)° V = 1597.30 (11) Å3 Z = 4 Mo Kα radiation μ = 1.80 mm−1 T = 298 K 0.20 × 0.20 × 0.18 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.715, T max = 0.738 9004 measured reflections 3352 independent reflections 2095 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.105 S = 1.02 3352 reflections 201 parameters 12 restraints H-atom parameters constrained Δρmax = 0.46 e Å−3 Δρmin = −0.46 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811019945/hb5892sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811019945/hb5892Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(NCS)2(C10H15N3)]F(000) = 736
Mr = 358.78Dx = 1.492 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2372 reflections
a = 7.6674 (3) Åθ = 2.6–25.1°
b = 14.8062 (5) ŵ = 1.80 mm1
c = 14.3766 (6) ÅT = 298 K
β = 101.853 (2)°Block, colorless
V = 1597.30 (11) Å30.20 × 0.20 × 0.18 mm
Z = 4
Bruker APEXII CCD diffractometer3352 independent reflections
Radiation source: fine-focus sealed tube2095 reflections with I > 2σ(I)
graphiteRint = 0.029
ω scansθmax = 26.7°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −9→9
Tmin = 0.715, Tmax = 0.738k = −17→18
9004 measured reflectionsl = −18→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.105H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0323P)2 + 1.952P] where P = (Fo2 + 2Fc2)/3
3352 reflections(Δ/σ)max = 0.001
201 parametersΔρmax = 0.46 e Å3
12 restraintsΔρmin = −0.46 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Zn10.72087 (6)−0.07353 (3)0.71636 (3)0.05504 (17)
S11.28221 (17)−0.15205 (10)0.89256 (10)0.0835 (4)
S20.3366 (2)−0.32564 (11)0.66375 (10)0.1063 (6)
N10.7424 (4)−0.0555 (2)0.5676 (2)0.0524 (8)
N20.6777 (4)0.0641 (2)0.6890 (2)0.0559 (8)
N40.9697 (5)−0.1140 (3)0.7651 (3)0.0760 (11)
N50.5583 (5)−0.1782 (2)0.6923 (2)0.0684 (10)
C10.7390 (5)0.0309 (3)0.5392 (3)0.0515 (9)
C20.7683 (5)0.0539 (3)0.4504 (3)0.0628 (11)
H20.76700.11420.43190.075*
C30.7993 (6)−0.0131 (4)0.3901 (3)0.0708 (13)
H30.81930.00150.33030.085*
C40.8009 (6)−0.1007 (4)0.4174 (3)0.0706 (13)
H40.8207−0.14690.37700.085*
C50.7719 (6)−0.1192 (3)0.5074 (3)0.0629 (11)
H50.7731−0.17920.52680.075*
C60.7014 (5)0.0970 (3)0.6107 (3)0.0577 (10)
C70.6971 (7)0.1958 (3)0.5876 (4)0.0877 (15)
H7A0.64420.22840.63250.132*
H7B0.62790.20520.52470.132*
H7C0.81640.21720.59070.132*
C111.1008 (6)−0.1300 (3)0.8180 (3)0.0573 (10)
C120.4653 (6)−0.2395 (3)0.6815 (3)0.0586 (10)
C80.6362 (7)0.1164 (3)0.7662 (3)0.0810 (14)0.655 (12)
H8A0.55020.16310.74170.097*0.655 (12)
H8B0.74310.14510.80160.097*0.655 (12)
C90.5577 (12)0.0508 (5)0.8318 (5)0.074 (3)0.655 (12)
H9A0.55820.08030.89210.089*0.655 (12)
H9B0.43490.03710.80260.089*0.655 (12)
C100.7978 (14)−0.0366 (8)0.9293 (6)0.089 (3)0.655 (12)
H10A0.7586−0.01600.98490.133*0.655 (12)
H10B0.8964−0.00040.91960.133*0.655 (12)
H10C0.8346−0.09860.93770.133*0.655 (12)
N30.6540 (6)−0.0290 (3)0.8480 (2)0.0814 (12)0.655 (12)
H3A0.5729−0.07030.85910.098*0.655 (12)
C8'0.6362 (7)0.1164 (3)0.7662 (3)0.0810 (14)0.345 (12)
H8'A0.50820.12330.75820.097*0.345 (12)
H8'B0.68930.17600.76730.097*0.345 (12)
C9'0.709 (2)0.0678 (7)0.8562 (7)0.097 (7)0.345 (12)
H9'A0.66580.09590.90810.116*0.345 (12)
H9'B0.83820.07190.87020.116*0.345 (12)
C10'0.723 (2)−0.0647 (13)0.9393 (8)0.066 (5)0.345 (12)
H10D0.6699−0.03380.98540.099*0.345 (12)
H10E0.8497−0.05650.95460.099*0.345 (12)
H10F0.6955−0.12790.94000.099*0.345 (12)
N3'0.6540 (6)−0.0290 (3)0.8480 (2)0.0814 (12)0.345 (12)
H3'A0.5331−0.03020.83940.098*0.345 (12)
U11U22U33U12U13U23
Zn10.0644 (3)0.0492 (3)0.0518 (3)0.0000 (2)0.0128 (2)0.0037 (2)
S10.0678 (8)0.0948 (10)0.0845 (9)0.0061 (7)0.0077 (6)−0.0070 (7)
S20.1434 (14)0.0975 (11)0.0869 (9)−0.0621 (10)0.0447 (9)−0.0190 (8)
N10.062 (2)0.0456 (19)0.0502 (18)−0.0062 (15)0.0126 (15)−0.0006 (15)
N20.061 (2)0.0461 (18)0.061 (2)0.0029 (16)0.0128 (16)−0.0033 (16)
N40.074 (3)0.082 (3)0.073 (3)0.008 (2)0.018 (2)0.021 (2)
N50.082 (3)0.055 (2)0.069 (2)−0.007 (2)0.017 (2)0.0074 (18)
C10.042 (2)0.057 (2)0.053 (2)−0.0039 (18)0.0023 (17)0.0080 (19)
C20.055 (3)0.071 (3)0.059 (3)−0.008 (2)0.003 (2)0.020 (2)
C30.064 (3)0.100 (4)0.048 (2)−0.015 (3)0.010 (2)0.009 (3)
C40.068 (3)0.092 (4)0.054 (3)−0.010 (3)0.018 (2)−0.012 (2)
C50.072 (3)0.056 (3)0.064 (3)−0.005 (2)0.022 (2)−0.002 (2)
C60.054 (2)0.044 (2)0.070 (3)−0.0030 (18)0.002 (2)0.004 (2)
C70.114 (4)0.048 (3)0.099 (4)−0.001 (3)0.015 (3)0.008 (3)
C110.065 (3)0.051 (2)0.060 (3)−0.005 (2)0.024 (2)0.003 (2)
C120.075 (3)0.059 (3)0.045 (2)−0.002 (2)0.022 (2)0.007 (2)
C80.097 (4)0.060 (3)0.089 (4)−0.004 (3)0.025 (3)−0.019 (3)
C90.081 (6)0.080 (6)0.062 (4)0.033 (4)0.018 (4)−0.005 (4)
C100.111 (7)0.092 (7)0.059 (5)0.030 (5)0.010 (5)−0.003 (4)
N30.092 (3)0.097 (3)0.057 (2)−0.012 (3)0.020 (2)−0.009 (2)
C8'0.097 (4)0.060 (3)0.089 (4)−0.004 (3)0.025 (3)−0.019 (3)
C9'0.096 (14)0.151 (18)0.044 (8)−0.025 (12)0.015 (8)−0.013 (9)
C10'0.090 (12)0.066 (10)0.046 (7)0.005 (9)0.025 (8)0.016 (7)
N3'0.092 (3)0.097 (3)0.057 (2)−0.012 (3)0.020 (2)−0.009 (2)
Zn1—N51.974 (4)C5—H50.9300
Zn1—N41.986 (4)C6—C71.499 (6)
Zn1—N22.088 (3)C7—H7A0.9600
Zn1—N32.163 (4)C7—H7B0.9600
Zn1—N12.195 (3)C7—H7C0.9600
S1—C111.605 (5)C8—C91.559 (7)
S2—C121.601 (5)C8—H8A0.9700
N1—C51.330 (5)C8—H8B0.9700
N1—C11.342 (5)C9—N31.388 (6)
N2—C61.273 (5)C9—H9A0.9700
N2—C81.441 (5)C9—H9B0.9700
N4—C111.154 (5)C10—N31.437 (7)
N5—C121.145 (5)C10—H10A0.9600
C1—C21.383 (5)C10—H10B0.9600
C1—C61.490 (6)C10—H10C0.9600
C2—C31.371 (6)N3—H3A0.9100
C2—H20.9300C9'—H9'A0.9700
C3—C41.354 (6)C9'—H9'B0.9700
C3—H30.9300C10'—H10D0.9600
C4—C51.385 (6)C10'—H10E0.9600
C4—H40.9300C10'—H10F0.9600
N5—Zn1—N4110.56 (16)C6—C7—H7A109.5
N5—Zn1—N2131.51 (14)C6—C7—H7B109.5
N4—Zn1—N2117.70 (15)H7A—C7—H7B109.5
N5—Zn1—N397.92 (16)C6—C7—H7C109.5
N4—Zn1—N399.59 (16)H7A—C7—H7C109.5
N2—Zn1—N379.09 (15)H7B—C7—H7C109.5
N5—Zn1—N195.51 (13)N4—C11—S1179.4 (4)
N4—Zn1—N196.97 (14)N5—C12—S2178.5 (4)
N2—Zn1—N174.85 (12)N2—C8—C9107.8 (4)
N3—Zn1—N1153.44 (15)N2—C8—H8A110.2
C5—N1—C1118.3 (3)C9—C8—H8A110.2
C5—N1—Zn1127.2 (3)N2—C8—H8B110.2
C1—N1—Zn1114.3 (3)C9—C8—H8B110.2
C6—N2—C8124.6 (4)H8A—C8—H8B108.5
C6—N2—Zn1119.6 (3)N3—C9—C8111.9 (5)
C8—N2—Zn1115.5 (3)N3—C9—H9A109.2
C11—N4—Zn1159.8 (4)C8—C9—H9A109.2
C12—N5—Zn1177.7 (4)N3—C9—H9B109.2
N1—C1—C2121.3 (4)C8—C9—H9B109.2
N1—C1—C6114.3 (3)H9A—C9—H9B107.9
C2—C1—C6124.4 (4)N3—C10—H10A109.5
C3—C2—C1119.2 (4)N3—C10—H10B109.5
C3—C2—H2120.4H10A—C10—H10B109.5
C1—C2—H2120.4N3—C10—H10C109.5
C4—C3—C2120.2 (4)H10A—C10—H10C109.5
C4—C3—H3119.9H10B—C10—H10C109.5
C2—C3—H3119.9C9—N3—C10119.7 (7)
C3—C4—C5117.8 (4)C9—N3—Zn1109.1 (3)
C3—C4—H4121.1C10—N3—Zn1114.1 (5)
C5—C4—H4121.1C9—N3—H3A104.0
N1—C5—C4123.3 (4)C10—N3—H3A104.0
N1—C5—H5118.4Zn1—N3—H3A104.0
C4—C5—H5118.4H9'A—C9'—H9'B108.1
N2—C6—C1116.2 (3)H10D—C10'—H10E109.5
N2—C6—C7124.7 (4)H10D—C10'—H10F109.5
C1—C6—C7119.1 (4)H10E—C10'—H10F109.5
D—H···AD—HH···AD···AD—H···A
N3—H3A···S1i0.912.663.551 (5)165
Table 1

Selected bond lengths (Å)

Zn1—N51.974 (4)
Zn1—N41.986 (4)
Zn1—N22.088 (3)
Zn1—N32.163 (4)
Zn1—N12.195 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯S1i0.912.663.551 (5)165

Symmetry code: (i) .

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