Literature DB >> 21832020

Evaluation of pooling strategies for acute HIV-1 infection screening using nucleic acid amplification testing.

Timothy J Sullivan1, Pragna Patel, Angela Hutchinson, Steven F Ethridge, Monica M Parker.   

Abstract

A 128-member specimen pooling scheme for acute HIV infection (AHI) detection was evaluated using 21 AHI specimens (range, 1,520 to 500,000 copies/ml) previously identified by RNA testing of 16-member plasma pools. HIV-1 RNA was detectable in 128-member pools for all 21 specimens; however, one pool created from a specimen with 1,827 copies/ml was nonreactive in one of three replicates.

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Year:  2011        PMID： 21832020      PMCID： PMC3187297          DOI： 10.1128/JCM.00650-11

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  9 in total

1.  Performance of the Aptima HIV-1 RNA qualitative assay with 16- and 32-member specimen pools.

Authors:  Steven F Ethridge; Clyde Hart; Debra L Hanson; Monica M Parker; Timothy J Sullivan; Berry Bennett; Petrice Stephens; Joslyn Hilliard; Pragna Patel
Journal:  J Clin Microbiol       Date:  2010-06-30       Impact factor: 5.948

2.  Routine surveillance for the detection of acute and recent HIV infections and transmission of antiretroviral resistance.

Authors:  Hong-Ha M Truong; Robert M Grant; Willi McFarland; Timothy Kellogg; Charlotte Kent; Brian Louie; Ernest Wong; Jeffrey D Klausner
Journal:  AIDS       Date:  2006-11-14       Impact factor: 4.177

3.  Optimizing screening for acute human immunodeficiency virus infection with pooled nucleic acid amplification tests.

Authors:  Daniel J Westreich; Michael G Hudgens; Susan A Fiscus; Christopher D Pilcher
Journal:  J Clin Microbiol       Date:  2008-03-19       Impact factor: 5.948

4.  Acute primary HIV infection.

Authors:  T C Quinn
Journal:  JAMA       Date:  1997-07-02       Impact factor: 56.272

5.  Targeted screening for primary HIV infection through pooled HIV-RNA testing in men who have sex with men.

Authors:  Joanne Stekler; Paul D Swenson; Robert W Wood; H Hunter Handsfield; Matthew R Golden
Journal:  AIDS       Date:  2005-08-12       Impact factor: 4.177

6.  Real-time, universal screening for acute HIV infection in a routine HIV counseling and testing population.

Authors:  Christopher D Pilcher; J Todd McPherson; Peter A Leone; Marlene Smurzynski; Judy Owen-O'Dowd; Amy L Peace-Brewer; Juanita Harris; Charles B Hicks; Joseph J Eron; Susan A Fiscus
Journal:  JAMA       Date:  2002-07-10       Impact factor: 56.272

7.  Detecting acute human immunodeficiency virus infection using 3 different screening immunoassays and nucleic acid amplification testing for human immunodeficiency virus RNA, 2006-2008.

Authors:  Pragna Patel; Duncan Mackellar; Pat Simmons; Apurva Uniyal; Kathleen Gallagher; Berry Bennett; Timothy J Sullivan; Alexis Kowalski; Monica M Parker; Marlene LaLota; Peter Kerndt; Patrick S Sullivan
Journal:  Arch Intern Med       Date:  2010-01-11

8.  Highly sensitive multiplex assay for detection of human immunodeficiency virus type 1 and hepatitis C virus RNA.

Authors:  C Giachetti; J M Linnen; D P Kolk; J Dockter; K Gillotte-Taylor; M Park; M Ho-Sing-Loy; M K McCormick; L T Mimms; S H McDonough
Journal:  J Clin Microbiol       Date:  2002-07       Impact factor: 5.948

9.  Cost-effectiveness of pooled nucleic acid amplification testing for acute HIV infection after third-generation HIV antibody screening and rapid testing in the United States: a comparison of three public health settings.

Authors:  Angela B Hutchinson; Pragna Patel; Stephanie L Sansom; Paul G Farnham; Timothy J Sullivan; Berry Bennett; Peter R Kerndt; Robert K Bolan; James D Heffelfinger; Vimalanand S Prabhu; Bernard M Branson
Journal:  PLoS Med       Date:  2010-09-28       Impact factor: 11.069
  9 in total
  9 in total

1.  The objective function controversy for group testing: Much ado about nothing?

Authors:  Brianna D Hitt; Christopher R Bilder; Joshua M Tebbs; Christopher S McMahan
Journal:  Stat Med       Date:  2019-08-30       Impact factor: 2.373

Review 2.  Developments in CD4 and viral load monitoring in resource-limited settings.

Authors:  Christopher F Rowley
Journal:  Clin Infect Dis       Date:  2013-11-11       Impact factor: 9.079

3.  Cost-effectiveness of pooled nucleic acid amplification testing for acute HIV infection after third-generation HIV antibody screening and rapid testing in the United States: a comparison of three public health settings.

Authors:  Angela B Hutchinson; Pragna Patel; Stephanie L Sansom; Paul G Farnham; Timothy J Sullivan; Berry Bennett; Peter R Kerndt; Robert K Bolan; James D Heffelfinger; Vimalanand S Prabhu; Bernard M Branson
Journal:  PLoS Med       Date:  2010-09-28       Impact factor: 11.069

4.  Identification of Acute HIV-1 Infection by Hologic Aptima HIV-1 RNA Qualitative Assay.

Authors:  Mark M Manak; Leigh Anne Eller; Jennifer Malia; Linda L Jagodzinski; Rapee Trichavaroj; Joseph Oundo; Cornelia Lueer; Fatim Cham; Mark de Souza; Nelson L Michael; Merlin L Robb; Sheila A Peel
Journal:  J Clin Microbiol       Date:  2017-04-19       Impact factor: 5.948

5.  Evaluation of Commercial qPCR Kits for Detection of SARS-CoV-2 in Pooled Samples.

Authors:  Vlad Petrovan; Virgil Vrajmasu; Ana Cristina Bucur; Dan Sebastian Soare; Eugen Radu; Paula Dimon; Mihaela Zaulet
Journal:  Diagnostics (Basel)       Date:  2020-07-11

6.  Enhanced throughput of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) real-time RT-PCR panel by assay multiplexing and specimen pooling.

Authors:  Xiaoyan Lu; Senthilkumar K Sakthivel; Lijuan Wang; Brian Lynch; Sheila M Dollard
Journal:  J Virol Methods       Date:  2021-04-08       Impact factor: 2.014

7.  The Positive Rate of Nucleic Acid Testing and the Epidemiological Characteristics of COVID-19 in Chongqing.

Authors:  Xiaohua Liang; Yajun Sun; Lun Xiao; YanLing Ren; Xian Tang
Journal:  Front Med (Lausanne)       Date:  2022-01-14

8.  COVID-19 Sample Pooling: From RNA Extraction to Quantitative Real-time RT-PCR.

Authors:  Kenny Voon; Nur Alia Johari; Khai Lone Lim; Siew Tung Wong; Loke Tim Khaw; Shew Fung Wong; Elaine W L Chan; Kok Keong Chan; Boon Keat Tan; Nurul Hanis Ramzi; Patricia K C Lim; Lokman H Sulaiman
Journal:  Bio Protoc       Date:  2021-05-05

9.  A novel strategy for community screening of SARS-CoV-2 (COVID-19): Sample pooling method.

Authors:  Khai Lone Lim; Nur Alia Johari; Siew Tung Wong; Loke Tim Khaw; Boon Keat Tan; Kok Keong Chan; Shew Fung Wong; Wan Ling Elaine Chan; Nurul Hanis Ramzi; Patricia Kim Chooi Lim; Sulaiman Lokman Hakim; Kenny Voon
Journal:  PLoS One       Date:  2020-08-28       Impact factor: 3.240
  9 in total

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