Literature DB >> 2183196

Retropseudogenes constitute the major part of the human elongation factor 1 alpha gene family.

H O Madsen1, K Poulsen, O Dahl, B F Clark, J P Hjorth.   

Abstract

The elongation factor 1 alpha (EF-1 alpha) is a protein which promotes the GTP-dependent binding of aminoacyl-tRNA to ribosomes in the protein synthesis process. A human gene coding for EF-1 alpha has previously been cloned and sequenced along with a pseudo-gene. Here, we have further analyzed the family of human EF-1 alpha genes. Using an EF-1 alpha cDNA as probe twelve genomic EF-1 alpha-like clones were isolated and analyzed. Four of these were sequenced and found to contain EF-1 alpha retropseudogenes. A Southern blot analysis indicated that the remaining eight clones also contained retropseudogenes. Genomic Southern blot analysis revealed at least twenty loci in the human genome with sequence homology to the EF-1 alpha cDNA. Besides the already described active gene only one potentially active locus was found. The others appeared to be retropseudogenes. EF-1 alpha retropseudogenes were also found to be abundant in the mammalian species mouse and pig, while the chicken contained only one presumably active EF-1 alpha gene.

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Year:  1990        PMID: 2183196      PMCID: PMC330519          DOI: 10.1093/nar/18.6.1513

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  27 in total

1.  A general method for isolation of high molecular weight DNA from eukaryotes.

Authors:  N Blin; D W Stafford
Journal:  Nucleic Acids Res       Date:  1976-09       Impact factor: 16.971

2.  Host specificity of DNA produced by Escherichia coli: bacterial mutations affecting the restriction and modification of DNA.

Authors:  W B Wood
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3.  Isolation and sequence analysis of a hybrid delta-globin pseudogene from the brown lemur.

Authors:  A J Jeffreys; P A Barrie; S Harris; D H Fawcett; Z J Nugent; A C Boyd
Journal:  J Mol Biol       Date:  1982-04-15       Impact factor: 5.469

4.  A bacteriophage lambda vector for cloning large DNA fragments made with several restriction enzymes.

Authors:  W A Loenen; W J Brammar
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5.  Processed genes: a dispersed human immunoglobulin gene bearing evidence of RNA-type processing.

Authors:  G F Hollis; P A Hieter; O W McBride; D Swan; P Leder
Journal:  Nature       Date:  1982-03-25       Impact factor: 49.962

6.  Renaturation rate studies of a single family of interspersed repeated sequences in human deoxyribonucleic acid.

Authors:  F P Rinehart; T G Ritch; P L Deininger; C W Schmid
Journal:  Biochemistry       Date:  1981-05-26       Impact factor: 3.162

7.  The sequences of an expressed rat alpha-tubulin gene and a pseudogene with an inserted repetitive element.

Authors:  I Lemischka; P A Sharp
Journal:  Nature       Date:  1982-11-25       Impact factor: 49.962

8.  Sequencing end-labeled DNA with base-specific chemical cleavages.

Authors:  A M Maxam; W Gilbert
Journal:  Methods Enzymol       Date:  1980       Impact factor: 1.600

9.  Cloning and sequencing of the immunoglobulin A1 protease gene (iga) of Haemophilus influenzae serotype b.

Authors:  K Poulsen; J Brandt; J P Hjorth; H C Thøgersen; M Kilian
Journal:  Infect Immun       Date:  1989-10       Impact factor: 3.441

10.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

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  11 in total

1.  Nucleotide sequence of rat elongation factor-1 alpha cDNA.

Authors:  T Shirasawa; K Sakamoto; T Akashi; H Takahashi; A Kawashima
Journal:  Nucleic Acids Res       Date:  1992-02-25       Impact factor: 16.971

2.  The elongation factor 1 A-2 isoform from rabbit: cloning of the cDNA and characterization of the protein.

Authors:  S Kahns; A Lund; P Kristensen; C R Knudsen; B F Clark; J Cavallius; W C Merrick
Journal:  Nucleic Acids Res       Date:  1998-04-15       Impact factor: 16.971

3.  Sequence and promoter analysis of the highly expressed TEF gene of the filamentous fungus Ashbya gossypii.

Authors:  S Steiner; P Philippsen
Journal:  Mol Gen Genet       Date:  1994-02

4.  Increased expression of eukaryotic translation initiation factors eIF-4E and eIF-2 alpha in response to growth induction by c-myc.

Authors:  I B Rosenwald; D B Rhoads; L D Callanan; K J Isselbacher; E V Schmidt
Journal:  Proc Natl Acad Sci U S A       Date:  1993-07-01       Impact factor: 11.205

5.  Oscheius tipulae as an example of eEF1A gene diversity in nematodes.

Authors:  Rubens N Akamine; Carlos Eduardo Winter
Journal:  J Mol Evol       Date:  2008-08-12       Impact factor: 2.395

6.  Germ cell-specific expression of a gene encoding eukaryotic translation elongation factor 1 alpha (eEF-1 alpha) and generation of eEF-1 alpha retropseudogenes in Xenopus laevis.

Authors:  B Abdallah; J Hourdry; P A Krieg; H Denis; A Mazabraud
Journal:  Proc Natl Acad Sci U S A       Date:  1991-10-15       Impact factor: 11.205

7.  Phosphoglycerate kinase pseudogenes in the tammar wallaby and other macropodid marsupials.

Authors:  D W Cooper; E A Holland; K Rudman; J A Donald; R Zehavi-Feferman; L M McKenzie; A H Sinclair; J A Spencer; J A Graves; W E Poole
Journal:  Mamm Genome       Date:  1994-09       Impact factor: 2.957

8.  Intra- and inter-isolate variation of ribosomal and protein-coding genes in Pleurotus: implications for molecular identification and phylogeny on fungal groups.

Authors:  Xiao-Lan He; Qian Li; Wei-Hong Peng; Jie Zhou; Xue-Lian Cao; Di Wang; Zhong-Qian Huang; Wei Tan; Yu Li; Bing-Cheng Gan
Journal:  BMC Microbiol       Date:  2017-06-26       Impact factor: 3.605

9.  42Sp48 in previtellogenic Xenopus oocytes is structurally homologous to EF-1 alpha and may be a stage-specific elongation factor.

Authors:  N J Coppard; K Poulsen; H O Madsen; J Frydenberg; B F Clark
Journal:  J Cell Biol       Date:  1991-01       Impact factor: 10.539

10.  Molecular characterization and expression analysis of five different elongation factor 1 alpha genes in the flatfish Senegalese sole (Solea senegalensis Kaup): differential gene expression and thyroid hormones dependence during metamorphosis.

Authors:  Carlos Infante; Esther Asensio; José Pedro Cañavate; Manuel Manchado
Journal:  BMC Mol Biol       Date:  2008-01-30       Impact factor: 2.946

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