Literature DB >> 18282505

Long-range regulation of alpha-globin gene expression.

Douglas R Higgs1, Douglas Vernimmen, Bill Wood.   

Abstract

Over the past 20 years, there has been an increasing awareness that gene expression can be regulated by multiple cis-acting sequences located at considerable distances (10-1000 kb) from the genes they control. Detailed investigation of a few specialized mammalian genes, including the genes controlling the synthesis of hemoglobin, provide important models to understand how such long-range regulatory elements act. In general, these elements contain a high density of evolutionarily conserved, transcription factor-binding sites and in many ways resemble the upstream regulatory elements found adjacent to the promoters of genes in simpler organisms, differing only in the distance over which they act. We have investigated in detail how the remote regulatory elements of the alpha-globin cluster become activated as hematopoietic stem cells (HSCs) undergo commitment, lineage specification, and differentiation to form red blood cells. In turn, we have addressed how, during this process, the upstream elements control the correct spatial and temporal expression from the alpha-gene promoter which lies approximately 60 kb downstream of these elements. At present too few loci have been studied to determine whether there are general principles underlying long-range regulation but some common themes are emerging.

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Year:  2008        PMID: 18282505     DOI: 10.1016/S0065-2660(07)00005-3

Source DB:  PubMed          Journal:  Adv Genet        ISSN: 0065-2660            Impact factor:   1.944


  16 in total

1.  Polycomb eviction as a new distant enhancer function.

Authors:  Douglas Vernimmen; Magnus D Lynch; Marco De Gobbi; David Garrick; Jacqueline A Sharpe; Jacqueline A Sloane-Stanley; Andrew J H Smith; Douglas R Higgs
Journal:  Genes Dev       Date:  2011-08-01       Impact factor: 11.361

2.  Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters.

Authors:  Frederic Koch; Romain Fenouil; Marta Gut; Pierre Cauchy; Thomas K Albert; Joaquin Zacarias-Cabeza; Salvatore Spicuglia; Albane Lamy de la Chapelle; Martin Heidemann; Corinna Hintermair; Dirk Eick; Ivo Gut; Pierre Ferrier; Jean-Christophe Andrau
Journal:  Nat Struct Mol Biol       Date:  2011-07-17       Impact factor: 15.369

3.  The molecular basis of α-thalassemia.

Authors:  Douglas R Higgs
Journal:  Cold Spring Harb Perspect Med       Date:  2013-01-01       Impact factor: 6.915

4.  Identification of biologically relevant enhancers in human erythroid cells.

Authors:  Mack Y Su; Laurie A Steiner; Hannah Bogardus; Tejaswini Mishra; Vincent P Schulz; Ross C Hardison; Patrick G Gallagher
Journal:  J Biol Chem       Date:  2013-01-22       Impact factor: 5.157

5.  Global transcriptome analysis and enhancer landscape of human primary T follicular helper and T effector lymphocytes.

Authors:  Jason S Weinstein; Kimberly Lezon-Geyda; Yelena Maksimova; Samuel Craft; Yaoping Zhang; Mack Su; Vincent P Schulz; Joseph Craft; Patrick G Gallagher
Journal:  Blood       Date:  2014-10-20       Impact factor: 22.113

6.  Developmental silencing of human zeta-globin gene expression is mediated by the transcriptional repressor RREB1.

Authors:  Ruei-Lin Chen; Yu-Chi Chou; Yii-Jenq Lan; Ting-Shuo Huang; C-K James Shen
Journal:  J Biol Chem       Date:  2010-02-04       Impact factor: 5.157

7.  Dynamics of alpha-globin locus chromatin structure and gene expression during erythroid differentiation of human CD34(+) cells in culture.

Authors:  Milind C Mahajan; Subhradip Karmakar; Peter E Newburger; Diane S Krause; Sherman M Weissman
Journal:  Exp Hematol       Date:  2009-07-14       Impact factor: 3.084

8.  Zebrafish globin switching occurs in two developmental stages and is controlled by the LCR.

Authors:  Jared J Ganis; Nelson Hsia; Eirini Trompouki; Jill L O de Jong; Anthony DiBiase; Janelle S Lambert; Zhiying Jia; Peter J Sabo; Molly Weaver; Richard Sandstrom; John A Stamatoyannopoulos; Yi Zhou; Leonard I Zon
Journal:  Dev Biol       Date:  2012-04-19       Impact factor: 3.582

Review 9.  An international effort to cure a global health problem: A report on the 19th Hemoglobin Switching Conference.

Authors:  Gerd A Blobel; David Bodine; Marjorie Brand; John Crispino; Marella F T R de Bruijn; David Nathan; Thalia Papayannopoulou; Catherine Porcher; John Strouboulis; Len Zon; Douglas R Higgs; George Stamatoyannopoulos; James Douglas Engel
Journal:  Exp Hematol       Date:  2015-07-02       Impact factor: 3.084

10.  TMEM8 - a non-globin gene entrapped in the globin web.

Authors:  Elena S Philonenko; Denis B Klochkov; Victoria V Borunova; Alexey A Gavrilov; Sergey V Razin; Olga V Iarovaia
Journal:  Nucleic Acids Res       Date:  2009-12       Impact factor: 16.971

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