Literature DB >> 21827952

Structural basis of the anti-HIV activity of the cyanobacterial Oscillatoria Agardhii agglutinin.

Leonardus M I Koharudin1, Angela M Gronenborn.   

Abstract

The cyanobacterial Oscillatory Agardhii agglutinin (OAA) is a recently discovered HIV-inactivating lectin that interacts with high-mannose sugars. Nuclear magnetic resonance (NMR) binding studies between OAA and α3,α6-mannopentaose (Manα(1-3)[Manα(1-3)[Manα(1-6)]Manα(1-6)]Man), the branched core unit of Man-9, revealed two binding sites at opposite ends of the protein, exhibiting essentially identical affinities. Atomic details of the specific protein-sugar contacts in the recognition loops of OAA were delineated in the high-resolution crystal structures of free and glycan-complexed protein. No major changes in the overall protein structure are induced by carbohydrate binding, with essentially identical apo- and sugar-bound conformations in binding site 1. A single peptide bond flip at W77-G78 is seen in binding site 2. Our combined NMR and crystallographic results provide structural insights into the mechanism by which OAA specifically recognizes the branched Man-9 core, distinctly different from the recognition of the D1 and D3 arms at the nonreducing end of high-mannose carbohydrates by other antiviral lectins.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21827952      PMCID: PMC3154684          DOI: 10.1016/j.str.2011.05.010

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  34 in total

1.  A potent novel anti-HIV protein from the cultured cyanobacterium Scytonema varium.

Authors:  Heidi R Bokesch; Barry R O'Keefe; Tawnya C McKee; Lewis K Pannell; Gregory M L Patterson; Roberta S Gardella; Raymond C Sowder; Jim Turpin; Karen Watson; Robert W Buckheit; Michael R Boyd
Journal:  Biochemistry       Date:  2003-03-11       Impact factor: 3.162

2.  Novel fold and carbohydrate specificity of the potent anti-HIV cyanobacterial lectin from Oscillatoria agardhii.

Authors:  Leonardus M I Koharudin; William Furey; Angela M Gronenborn
Journal:  J Biol Chem       Date:  2010-10-19       Impact factor: 5.157

3.  Conformational selection and induced fit mechanism underlie specificity in noncovalent interactions with ubiquitin.

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Review 4.  Interaction of human immunodeficiency virus (HIV) glycans with lectins of the human immune system.

Authors:  Xin Ji; Ying Chen; Jonathan Faro; Henry Gewurz; James Bremer; Gregory T Spear
Journal:  Curr Protein Pept Sci       Date:  2006-08       Impact factor: 3.272

5.  DC-SIGN interactions with human immunodeficiency virus type 1 and 2 and simian immunodeficiency virus.

Authors:  S Pöhlmann; F Baribaud; B Lee; G J Leslie; M D Sanchez; K Hiebenthal-Millow; J Münch; F Kirchhoff; R W Doms
Journal:  J Virol       Date:  2001-05       Impact factor: 5.103

6.  Solution structure of a cyanovirin-N:Man alpha 1-2Man alpha complex: structural basis for high-affinity carbohydrate-mediated binding to gp120.

Authors:  C A Bewley
Journal:  Structure       Date:  2001-10       Impact factor: 5.006

7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

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8.  Crystal structures of the HIV-1 inhibitory cyanobacterial protein MVL free and bound to Man3GlcNAc2: structural basis for specificity and high-affinity binding to the core pentasaccharide from n-linked oligomannoside.

Authors:  David C Williams; Jae Young Lee; Mengli Cai; Carole A Bewley; G Marius Clore
Journal:  J Biol Chem       Date:  2005-06-03       Impact factor: 5.157

9.  Isolation and characterization of a mannan-binding lectin from the freshwater cyanobacterium (blue-green algae) Microcystis viridis.

Authors:  M Yamaguchi; T Ogawa; K Muramoto; Y Kamio; M Jimbo; H Kamiya
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10.  Domain-swapped structure of the potent antiviral protein griffithsin and its mode of carbohydrate binding.

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  21 in total

1.  Sampling of Glycan-Bound Conformers by the Anti-HIV Lectin Oscillatoria agardhii agglutinin in the Absence of Sugar.

Authors:  Marta G Carneiro; Leonardus M I Koharudin; David Ban; T Michael Sabo; Pablo Trigo-Mourino; Adam Mazur; Christian Griesinger; Angela M Gronenborn; Donghan Lee
Journal:  Angew Chem Int Ed Engl       Date:  2015-04-14       Impact factor: 15.336

Review 2.  HIV-1 gp120 as a therapeutic target: navigating a moving labyrinth.

Authors:  Priyamvada Acharya; Sabrina Lusvarghi; Carole A Bewley; Peter D Kwong
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3.  Enhanced accuracy of kinetic information from CT-CPMG experiments by transverse rotating-frame spectroscopy.

Authors:  David Ban; Adam Mazur; Marta G Carneiro; T Michael Sabo; Karin Giller; Leonardus M I Koharudin; Stefan Becker; Angela M Gronenborn; Christian Griesinger; Donghan Lee
Journal:  J Biomol NMR       Date:  2013-08-15       Impact factor: 2.835

4.  Toward Closing the Gap: Quantum Mechanical Calculations and Experimentally Measured Chemical Shifts of a Microcrystalline Lectin.

Authors:  Matthew Fritz; Caitlin M Quinn; Mingzhang Wang; Guangjin Hou; Xingyu Lu; Leonardus M I Koharudin; Tatyana Polenova; Angela M Gronenborn
Journal:  J Phys Chem B       Date:  2016-12-21       Impact factor: 2.991

5.  (1)H, (13)C and (15)N resonance assignment of the anti-HIV lectin from Oscillatoria agardhii.

Authors:  Marta G Carneiro; Leonardus M I Koharudin; Christian Griesinger; Angela M Gronenborn; Donghan Lee
Journal:  Biomol NMR Assign       Date:  2015-02-14       Impact factor: 0.746

6.  Integrating NMR, SAXS, and Atomistic Simulations: Structure and Dynamics of a Two-Domain Protein.

Authors:  Karl T Debiec; Matthew J Whitley; Leonardus M I Koharudin; Lillian T Chong; Angela M Gronenborn
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7.  Determination of accurate backbone chemical shift tensors in microcrystalline proteins by integrating MAS NMR and QM/MM.

Authors:  Matthew Fritz; Caitlin M Quinn; Mingzhang Wang; Guangjin Hou; Xingyu Lu; Leonardus M I Koharudin; Jochem Struppe; David A Case; Tatyana Polenova; Angela M Gronenborn
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Review 8.  Anti-tumor and anti-viral activities of Galanthus nivalis agglutinin (GNA)-related lectins.

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9.  Sensing lectin-glycan interactions using lectin super-microarrays and glycans labeled with dye-doped silica nanoparticles.

Authors:  Xin Wang; Elena Matei; Lingquan Deng; Leonardus Koharudin; Angela M Gronenborn; Olof Ramström; Mingdi Yan
Journal:  Biosens Bioelectron       Date:  2013-03-21       Impact factor: 10.618

10.  Burkholderia oklahomensis agglutinin is a canonical two-domain OAA-family lectin: structures, carbohydrate binding and anti-HIV activity.

Authors:  Matthew J Whitley; William Furey; Sireesha Kollipara; Angela M Gronenborn
Journal:  FEBS J       Date:  2013-04-02       Impact factor: 5.542

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