Literature DB >> 21816099

Simplified Symptom Pattern Method for verbal autopsy analysis: multisite validation study using clinical diagnostic gold standards.

Christopher Jl Murray1, Spencer L James, Jeanette K Birnbaum, Michael K Freeman, Rafael Lozano, Alan D Lopez.   

Abstract

BACKGROUND: Verbal autopsy can be a useful tool for generating cause of death data in data-sparse regions around the world. The Symptom Pattern (SP) Method is one promising approach to analyzing verbal autopsy data, but it has not been tested rigorously with gold standard diagnostic criteria. We propose a simplified version of SP and evaluate its performance using verbal autopsy data with accompanying true cause of death.
METHODS: We investigated specific parameters in SP's Bayesian framework that allow for its optimal performance in both assigning individual cause of death and in determining cause-specific mortality fractions. We evaluated these outcomes of the method separately for adult, child, and neonatal verbal autopsies in 500 different population constructs of verbal autopsy data to analyze its ability in various settings.
RESULTS: We determined that a modified, simpler version of Symptom Pattern (termed Simplified Symptom Pattern, or SSP) performs better than the previously-developed approach. Across 500 samples of verbal autopsy testing data, SSP achieves a median cause-specific mortality fraction accuracy of 0.710 for adults, 0.739 for children, and 0.751 for neonates. In individual cause of death assignment in the same testing environment, SSP achieves 45.8% chance-corrected concordance for adults, 51.5% for children, and 32.5% for neonates.
CONCLUSIONS: The Simplified Symptom Pattern Method for verbal autopsy can yield reliable and reasonably accurate results for both individual cause of death assignment and for determining cause-specific mortality fractions. The method demonstrates that verbal autopsies coupled with SSP can be a useful tool for analyzing mortality patterns and determining individual cause of death from verbal autopsy data.

Entities:  

Year:  2011        PMID: 21816099      PMCID: PMC3160923          DOI: 10.1186/1478-7954-9-30

Source DB:  PubMed          Journal:  Popul Health Metr        ISSN: 1478-7954


  8 in total

1.  A probabilistic approach to interpreting verbal autopsies: methodology and preliminary validation in Vietnam.

Authors:  Peter Byass; Dao Lan Huong; Hoang Van Minh
Journal:  Scand J Public Health Suppl       Date:  2003       Impact factor: 3.021

2.  Direct estimation of cause-specific mortality fractions from verbal autopsies: multisite validation study using clinical diagnostic gold standards.

Authors:  Abraham D Flaxman; Alireza Vahdatpour; Spencer L James; Jeanette K Birnbaum; Christopher Jl Murray
Journal:  Popul Health Metr       Date:  2011-08-04

3.  Performance of physician-certified verbal autopsies: multisite validation study using clinical diagnostic gold standards.

Authors:  Rafael Lozano; Alan D Lopez; Charles Atkinson; Mohsen Naghavi; Abraham D Flaxman; Christopher Jl Murray
Journal:  Popul Health Metr       Date:  2011-08-04

4.  Performance of the Tariff Method: validation of a simple additive algorithm for analysis of verbal autopsies.

Authors:  Spencer L James; Abraham D Flaxman; Christopher Jl Murray
Journal:  Popul Health Metr       Date:  2011-08-04

5.  Performance of InterVA for assigning causes of death to verbal autopsies: multisite validation study using clinical diagnostic gold standards.

Authors:  Rafael Lozano; Michael K Freeman; Spencer L James; Benjamin Campbell; Alan D Lopez; Abraham D Flaxman; Christopher Jl Murray
Journal:  Popul Health Metr       Date:  2011-08-05

6.  Population Health Metrics Research Consortium gold standard verbal autopsy validation study: design, implementation, and development of analysis datasets.

Authors:  Christopher Jl Murray; Alan D Lopez; Robert Black; Ramesh Ahuja; Said Mohd Ali; Abdullah Baqui; Lalit Dandona; Emily Dantzer; Vinita Das; Usha Dhingra; Arup Dutta; Wafaie Fawzi; Abraham D Flaxman; Sara Gómez; Bernardo Hernández; Rohina Joshi; Henry Kalter; Aarti Kumar; Vishwajeet Kumar; Rafael Lozano; Marilla Lucero; Saurabh Mehta; Bruce Neal; Summer Lockett Ohno; Rajendra Prasad; Devarsetty Praveen; Zul Premji; Dolores Ramírez-Villalobos; Hazel Remolador; Ian Riley; Minerva Romero; Mwanaidi Said; Diozele Sanvictores; Sunil Sazawal; Veronica Tallo
Journal:  Popul Health Metr       Date:  2011-08-04

7.  Robust metrics for assessing the performance of different verbal autopsy cause assignment methods in validation studies.

Authors:  Christopher Jl Murray; Rafael Lozano; Abraham D Flaxman; Alireza Vahdatpour; Alan D Lopez
Journal:  Popul Health Metr       Date:  2011-08-04

8.  Validation of the symptom pattern method for analyzing verbal autopsy data.

Authors:  Christopher J L Murray; Alan D Lopez; Dennis M Feehan; Shanon T Peter; Gonghuan Yang
Journal:  PLoS Med       Date:  2007-11-20       Impact factor: 11.069

  8 in total
  21 in total

1.  Direct estimation of cause-specific mortality fractions from verbal autopsies: multisite validation study using clinical diagnostic gold standards.

Authors:  Abraham D Flaxman; Alireza Vahdatpour; Spencer L James; Jeanette K Birnbaum; Christopher Jl Murray
Journal:  Popul Health Metr       Date:  2011-08-04

2.  Performance of the Tariff Method: validation of a simple additive algorithm for analysis of verbal autopsies.

Authors:  Spencer L James; Abraham D Flaxman; Christopher Jl Murray
Journal:  Popul Health Metr       Date:  2011-08-04

3.  Record-linkage comparison of verbal autopsy and routine civil registration death certification in rural north-east South Africa: 2006-09.

Authors:  Jané Joubert; Debbie Bradshaw; Chodziwadziwa Kabudula; Chalapati Rao; Kathleen Kahn; Paul Mee; Stephen Tollman; Alan D Lopez; Theo Vos
Journal:  Int J Epidemiol       Date:  2014-08-21       Impact factor: 7.196

4.  Probabilistic Cause-of-death Assignment using Verbal Autopsies.

Authors:  Tyler H McCormick; Zehang Richard Li; Clara Calvert; Amelia C Crampin; Kathleen Kahn; Samuel J Clark
Journal:  J Am Stat Assoc       Date:  2016-10-18       Impact factor: 5.033

5.  Performance of InterVA for assigning causes of death to verbal autopsies: multisite validation study using clinical diagnostic gold standards.

Authors:  Rafael Lozano; Michael K Freeman; Spencer L James; Benjamin Campbell; Alan D Lopez; Abraham D Flaxman; Christopher Jl Murray
Journal:  Popul Health Metr       Date:  2011-08-05

6.  Population Health Metrics Research Consortium gold standard verbal autopsy validation study: design, implementation, and development of analysis datasets.

Authors:  Christopher Jl Murray; Alan D Lopez; Robert Black; Ramesh Ahuja; Said Mohd Ali; Abdullah Baqui; Lalit Dandona; Emily Dantzer; Vinita Das; Usha Dhingra; Arup Dutta; Wafaie Fawzi; Abraham D Flaxman; Sara Gómez; Bernardo Hernández; Rohina Joshi; Henry Kalter; Aarti Kumar; Vishwajeet Kumar; Rafael Lozano; Marilla Lucero; Saurabh Mehta; Bruce Neal; Summer Lockett Ohno; Rajendra Prasad; Devarsetty Praveen; Zul Premji; Dolores Ramírez-Villalobos; Hazel Remolador; Ian Riley; Minerva Romero; Mwanaidi Said; Diozele Sanvictores; Sunil Sazawal; Veronica Tallo
Journal:  Popul Health Metr       Date:  2011-08-04

7.  Robust metrics for assessing the performance of different verbal autopsy cause assignment methods in validation studies.

Authors:  Christopher Jl Murray; Rafael Lozano; Abraham D Flaxman; Alireza Vahdatpour; Alan D Lopez
Journal:  Popul Health Metr       Date:  2011-08-04

8.  Deriving causes of child mortality by re-analyzing national verbal autopsy data applying a standardized computer algorithm in Uganda, Rwanda and Ghana.

Authors:  Li Liu; Mengying Li; Stirling Cummings; Robert E Black
Journal:  J Glob Health       Date:  2015-06       Impact factor: 4.413

9.  Measuring causes of death in populations: a new metric that corrects cause-specific mortality fractions for chance.

Authors:  Abraham D Flaxman; Peter T Serina; Bernardo Hernandez; Christopher J L Murray; Ian Riley; Alan D Lopez
Journal:  Popul Health Metr       Date:  2015-10-12

10.  Bayesian hierarchical factor regression models to infer cause of death from verbal autopsy data.

Authors:  Kelly R Moran; Elizabeth L Turner; David Dunson; Amy H Herring
Journal:  J R Stat Soc Ser C Appl Stat       Date:  2021-02-23       Impact factor: 1.680

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