Literature DB >> 21789130

Predictive and prognostic molecular markers for cancer medicine.

Sunali Mehta1, Andrew Shelling, Anita Muthukaruppan, Annette Lasham, Cherie Blenkiron, George Laking, Cristin Print.   

Abstract

Over the last 10 years there has been an explosion of information about the molecular biology of cancer. A challenge in oncology is to translate this information into advances in patient care. While there are well-formed routes for translating new molecular information into drug therapy, the routes for translating new information into sensitive and specific diagnostic, prognostic and predictive tests are still being developed. Similarly, the science of using tumor molecular profiles to select clinical trial participants or to optimize therapy for individual patients is still in its infancy. This review will summarize the current technologies for predicting treatment response and prognosis in cancer medicine, and outline what the future may hold. It will also highlight the potential importance of methods that can integrate molecular, histopathological and clinical information into a synergistic understanding of tumor progression. While these possibilities are without doubt exciting, significant challenges remain if we are to implement them with a strong evidence base in a widely available and cost-effective manner.

Entities:  

Keywords:  biomarker; cancer; microarray; pathology; prognosis; treatment response

Year:  2010        PMID: 21789130      PMCID: PMC3126011          DOI: 10.1177/1758834009360519

Source DB:  PubMed          Journal:  Ther Adv Med Oncol        ISSN: 1758-8340            Impact factor:   8.168


  244 in total

1.  Sensitive mutation detection in heterogeneous cancer specimens by massively parallel picoliter reactor sequencing.

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Journal:  Nat Med       Date:  2006-06-25       Impact factor: 53.440

2.  Genomics shifts focus to rare diseases.

Authors:  Erika Check Hayden
Journal:  Nature       Date:  2009-09-24       Impact factor: 49.962

Review 3.  The potential role of gene expression in the management of primary and metastatic colorectal cancer.

Authors:  Michael D Alvarado; Eric H Jensen; Timothy J Yeatman
Journal:  Cancer Control       Date:  2006-01       Impact factor: 3.302

4.  High-throughput tissue microarray analysis of cyclin E gene amplification and overexpression in urinary bladder cancer.

Authors:  J Richter; U Wagner; J Kononen; A Fijan; J Bruderer; U Schmid; D Ackermann; R Maurer; G Alund; H Knönagel; M Rist; K Wilber; M Anabitarte; F Hering; T Hardmeier; A Schönenberger; R Flury; P Jäger; J L Fehr; P Schraml; H Moch; M J Mihatsch; T Gasser; O P Kallioniemi; G Sauter
Journal:  Am J Pathol       Date:  2000-09       Impact factor: 4.307

5.  Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression.

Authors:  Arun Sreekumar; Laila M Poisson; Thekkelnaycke M Rajendiran; Amjad P Khan; Qi Cao; Jindan Yu; Bharathi Laxman; Rohit Mehra; Robert J Lonigro; Yong Li; Mukesh K Nyati; Aarif Ahsan; Shanker Kalyana-Sundaram; Bo Han; Xuhong Cao; Jaeman Byun; Gilbert S Omenn; Debashis Ghosh; Subramaniam Pennathur; Danny C Alexander; Alvin Berger; Jeffrey R Shuster; John T Wei; Sooryanarayana Varambally; Christopher Beecher; Arul M Chinnaiyan
Journal:  Nature       Date:  2009-02-12       Impact factor: 49.962

6.  Differential expression of microRNAs in early-stage neoplastic transformation in the lungs of F344 rats chronically treated with the tobacco carcinogen 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone.

Authors:  Stephen Kalscheuer; Xiaoxiao Zhang; Yan Zeng; Pramod Upadhyaya
Journal:  Carcinogenesis       Date:  2008-09-09       Impact factor: 4.944

7.  Direct profiling of cancer biomarkers in tumor tissue using a multiplexed nanostructured microelectrode integrated circuit.

Authors:  Zhichao Fang; Leyla Soleymani; Georgios Pampalakis; Maisa Yoshimoto; Jeremy A Squire; Edward H Sargent; Shana O Kelley
Journal:  ACS Nano       Date:  2009-10-27       Impact factor: 15.881

Review 8.  RNA-Seq: a revolutionary tool for transcriptomics.

Authors:  Zhong Wang; Mark Gerstein; Michael Snyder
Journal:  Nat Rev Genet       Date:  2009-01       Impact factor: 53.242

9.  From genomics to chemical genomics: new developments in KEGG.

Authors:  Minoru Kanehisa; Susumu Goto; Masahiro Hattori; Kiyoko F Aoki-Kinoshita; Masumi Itoh; Shuichi Kawashima; Toshiaki Katayama; Michihiro Araki; Mika Hirakawa
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

10.  Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array.

Authors:  Paul J Gardina; Tyson A Clark; Brian Shimada; Michelle K Staples; Qing Yang; James Veitch; Anthony Schweitzer; Tarif Awad; Charles Sugnet; Suzanne Dee; Christopher Davies; Alan Williams; Yaron Turpaz
Journal:  BMC Genomics       Date:  2006-12-27       Impact factor: 3.969

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  72 in total

1.  Microarray-based SNP genotyping to identify genetic risk factors of triple-negative breast cancer (TNBC) in South Indian population.

Authors:  M Aravind Kumar; Vineeta Singh; Shaik Mohammad Naushad; Uday Shanker; M Lakshmi Narasu
Journal:  Mol Cell Biochem       Date:  2017-09-16       Impact factor: 3.396

Review 2.  Unravelling tumour heterogeneity using next-generation imaging: radiomics, radiogenomics, and habitat imaging.

Authors:  E Sala; E Mema; Y Himoto; H Veeraraghavan; J D Brenton; A Snyder; B Weigelt; H A Vargas
Journal:  Clin Radiol       Date:  2016-10-11       Impact factor: 2.350

3.  Biomaterials to model and measure epithelial cancers.

Authors:  Pranjali Beri; Bibiana F Matte; Laurent Fattet; Daehwan Kim; Jing Yang; Adam J Engler
Journal:  Nat Rev Mater       Date:  2018-09-06       Impact factor: 66.308

4.  Prediction-Oriented Marker Selection (PROMISE): With Application to High-Dimensional Regression.

Authors:  Soyeon Kim; Veerabhadran Baladandayuthapani; J Jack Lee
Journal:  Stat Biosci       Date:  2016-09-26

5.  Quantitative analysis and clonal characterization of T-cell receptor β repertoires in patients with advanced non-small cell lung cancer treated with cancer vaccine.

Authors:  Tu Mai; Atsushi Takano; Hiroyuki Suzuki; Takashi Hirose; Takahiro Mori; Koji Teramoto; Kazuma Kiyotani; Yusuke Nakamura; Yataro Daigo
Journal:  Oncol Lett       Date:  2017-05-05       Impact factor: 2.967

6.  MOSClip: multi-omic and survival pathway analysis for the identification of survival associated gene and modules.

Authors:  Paolo Martini; Monica Chiogna; Enrica Calura; Chiara Romualdi
Journal:  Nucleic Acids Res       Date:  2019-08-22       Impact factor: 16.971

7.  Low tumor glutathione level as a sensitivity marker for glutamate-cysteine ligase inhibitors.

Authors:  Satoru Nishizawa; Hideo Araki; Yoshinori Ishikawa; Satoshi Kitazawa; Akito Hata; Tomoyoshi Soga; Takahito Hara
Journal:  Oncol Lett       Date:  2018-04-10       Impact factor: 2.967

8.  Implementation of a Multiplex and Quantitative Proteomics Platform for Assessing Protein Lysates Using DNA-Barcoded Antibodies.

Authors:  Jinho Lee; Gary K Geiss; Gokhan Demirkan; Christopher P Vellano; Brian Filanoski; Yiling Lu; Zhenlin Ju; Shuangxing Yu; Huifang Guo; Lisa Y Bogatzki; Warren Carter; Rhonda K Meredith; Savitri Krishnamurthy; Zhiyong Ding; Joseph M Beechem; Gordon B Mills
Journal:  Mol Cell Proteomics       Date:  2018-03-12       Impact factor: 5.911

9.  Benefits, issues, and recommendations for personalized medicine in oncology in Canada.

Authors:  C Butts; S Kamel-Reid; G Batist; S Chia; C Blanke; M Moore; M B Sawyer; C Desjardins; A Dubois; J Pun; K Bonter; F D Ashbury
Journal:  Curr Oncol       Date:  2013-10       Impact factor: 3.677

Review 10.  Imaging genomics in cancer research: limitations and promises.

Authors:  Harrison X Bai; Ashley M Lee; Li Yang; Paul Zhang; Christos Davatzikos; John M Maris; Sharon J Diskin
Journal:  Br J Radiol       Date:  2016-02-11       Impact factor: 3.039

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