Literature DB >> 21785131

CAM-CM: a signal deconvolution tool for in vivo dynamic contrast-enhanced imaging of complex tissues.

Li Chen1, Tsung-Han Chan, Peter L Choyke, Elizabeth M C Hillman, Chong-Yung Chi, Zaver M Bhujwalla, Ge Wang, Sean S Wang, Zsolt Szabo, Yue Wang.   

Abstract

SUMMARY: In vivo dynamic contrast-enhanced imaging tools provide non-invasive methods for analyzing various functional changes associated with disease initiation, progression and responses to therapy. The quantitative application of these tools has been hindered by its inability to accurately resolve and characterize targeted tissues due to spatially mixed tissue heterogeneity. Convex Analysis of Mixtures - Compartment Modeling (CAM-CM) signal deconvolution tool has been developed to automatically identify pure-volume pixels located at the corners of the clustered pixel time series scatter simplex and subsequently estimate tissue-specific pharmacokinetic parameters. CAM-CM can dissect complex tissues into regions with differential tracer kinetics at pixel-wise resolution and provide a systems biology tool for defining imaging signatures predictive of phenotypes. AVAILABILITY: The MATLAB source code can be downloaded at the authors' website www.cbil.ece.vt.edu/software.htm CONTACT: yuewang@vt.edu SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

Mesh:

Year:  2011        PMID: 21785131      PMCID: PMC3167053          DOI: 10.1093/bioinformatics/btr436

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  8 in total

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2.  Nonnegative least-correlated component analysis for separation of dependent sources by volume maximization.

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3.  Clustering by passing messages between data points.

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Journal:  Science       Date:  2007-01-11       Impact factor: 47.728

4.  Depth-resolved optical imaging and microscopy of vascular compartment dynamics during somatosensory stimulation.

Authors:  Elizabeth M C Hillman; Anna Devor; Matthew B Bouchard; Andrew K Dunn; G W Krauss; Jesse Skoch; Brian J Bacskai; Anders M Dale; David A Boas
Journal:  Neuroimage       Date:  2007-01-11       Impact factor: 6.556

5.  All-optical anatomical co-registration for molecular imaging of small animals using dynamic contrast.

Authors:  Elizabeth M C Hillman; Anna Moore
Journal:  Nat Photonics       Date:  2007       Impact factor: 38.771

6.  Spectroscopic (multi-energy) CT distinguishes iodine and barium contrast material in MICE.

Authors:  N G Anderson; A P Butler; N J A Scott; N J Cook; J S Butzer; N Schleich; M Firsching; R Grasset; N de Ruiter; M Campbell; P H Butler
Journal:  Eur Radiol       Date:  2010-03-23       Impact factor: 5.315

Review 7.  Imaging of angiogenesis: from microscope to clinic.

Authors:  Donald M McDonald; Peter L Choyke
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8.  Decoding global gene expression programs in liver cancer by noninvasive imaging.

Authors:  Eran Segal; Claude B Sirlin; Clara Ooi; Adam S Adler; Jeremy Gollub; Xin Chen; Bryan K Chan; George R Matcuk; Christopher T Barry; Howard Y Chang; Michael D Kuo
Journal:  Nat Biotechnol       Date:  2007-05-21       Impact factor: 54.908

  8 in total
  10 in total

Review 1.  In vivo optical imaging and dynamic contrast methods for biomedical research.

Authors:  Elizabeth M C Hillman; Cyrus B Amoozegar; Tracy Wang; Addason F H McCaslin; Matthew B Bouchard; James Mansfield; Richard M Levenson
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2011-11-28       Impact factor: 4.226

Review 2.  Systems biology: perspectives on multiscale modeling in research on endocrine-related cancers.

Authors:  Robert Clarke; John J Tyson; Ming Tan; William T Baumann; Lu Jin; Jianhua Xuan; Yue Wang
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3.  Acceleration of dynamic fluorescence molecular tomography with principal component analysis.

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4.  Radiomic analysis of imaging heterogeneity in tumours and the surrounding parenchyma based on unsupervised decomposition of DCE-MRI for predicting molecular subtypes of breast cancer.

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Journal:  Eur Radiol       Date:  2019-01-07       Impact factor: 5.315

5.  Macroscopic Fluorescence Lifetime Imaging for Monitoring of Drug-Target Engagement.

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Journal:  Methods Mol Biol       Date:  2022

6.  Integration of Network Biology and Imaging to Study Cancer Phenotypes and Responses.

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Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2014-07-16       Impact factor: 3.710

7.  NCI Workshop Report: Clinical and Computational Requirements for Correlating Imaging Phenotypes with Genomics Signatures.

Authors:  Rivka Colen; Ian Foster; Robert Gatenby; Mary Ellen Giger; Robert Gillies; David Gutman; Matthew Heller; Rajan Jain; Anant Madabhushi; Subha Madhavan; Sandy Napel; Arvind Rao; Joel Saltz; James Tatum; Roeland Verhaak; Gary Whitman
Journal:  Transl Oncol       Date:  2014-10-24       Impact factor: 4.243

8.  Efficient blind spectral unmixing of fluorescently labeled samples using multi-layer non-negative matrix factorization.

Authors:  Thomas Pengo; Arrate Muñoz-Barrutia; Isabel Zudaire; Carlos Ortiz-de-Solorzano
Journal:  PLoS One       Date:  2013-11-08       Impact factor: 3.240

9.  Mathematical modelling of transcriptional heterogeneity identifies novel markers and subpopulations in complex tissues.

Authors:  Niya Wang; Eric P Hoffman; Lulu Chen; Li Chen; Zhen Zhang; Chunyu Liu; Guoqiang Yu; David M Herrington; Robert Clarke; Yue Wang
Journal:  Sci Rep       Date:  2016-01-07       Impact factor: 4.379

10.  Tumour heterogeneity revealed by unsupervised decomposition of dynamic contrast-enhanced magnetic resonance imaging is associated with underlying gene expression patterns and poor survival in breast cancer patients.

Authors:  Ming Fan; Pingping Xia; Bin Liu; Lin Zhang; Yue Wang; Xin Gao; Lihua Li
Journal:  Breast Cancer Res       Date:  2019-10-17       Impact factor: 6.466

  10 in total

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