Literature DB >> 21771932

Recommendations for reporting metabolite data.

Alisdair R Fernie, Asaph Aharoni, Lothar Willmitzer, Mark Stitt, Takayuki Tohge, Joachim Kopka, Adam J Carroll, Kazuki Saito, Paul D Fraser, Vincenzo DeLuca.   

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Year:  2011        PMID： 21771932      PMCID： PMC3226225          DOI： 10.1105/tpc.111.086272

Source DB:  PubMed          Journal:  Plant Cell        ISSN： 1040-4651            Impact factor:   11.277


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  51 in total

Review 1.  Plant metabolomics: large-scale phytochemistry in the functional genomics era.

Authors:  Lloyd W Sumner; Pedro Mendes; Richard A Dixon
Journal:  Phytochemistry       Date:  2003-03       Impact factor: 4.072

2.  Gas chromatography mass spectrometry-based metabolite profiling in plants.

Authors:  Jan Lisec; Nicolas Schauer; Joachim Kopka; Lothar Willmitzer; Alisdair R Fernie
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

3.  Eleven golden rules of quantitative RT-PCR.

Authors:  Michael K Udvardi; Tomasz Czechowski; Wolf-Rüdiger Scheible
Journal:  Plant Cell       Date:  2008-07-29       Impact factor: 11.277

4.  Dual labeling of metabolites for metabolome analysis (DLEMMA): A new approach for the identification and relative quantification of metabolites by means of dual isotope labeling and liquid chromatography-mass spectrometry.

Authors:  Liron Feldberg; Ilya Venger; Sergey Malitsky; Ilana Rogachev; Asaph Aharoni
Journal:  Anal Chem       Date:  2009-11-15       Impact factor: 6.986

5.  PlantMetabolomics.org: a web portal for plant metabolomics experiments.

Authors:  Preeti Bais; Stephanie M Moon; Kun He; Ricardo Leitao; Kate Dreher; Tom Walk; Yves Sucaet; Lenore Barkan; Gert Wohlgemuth; Mary R Roth; Eve Syrkin Wurtele; Philip Dixon; Oliver Fiehn; B Markus Lange; Vladimir Shulaev; Lloyd W Sumner; Ruth Welti; Basil J Nikolau; Seung Y Rhee; Julie A Dickerson
Journal:  Plant Physiol       Date:  2010-02-10       Impact factor: 8.340

Review 6.  The secondary metabolism of Arabidopsis thaliana: growing like a weed.

Authors:  John C D'Auria; Jonathan Gershenzon
Journal:  Curr Opin Plant Biol       Date:  2005-06       Impact factor: 7.834

7.  The relationship between steady-state gas exchange of bean leaves and the levels of carbon-reduction-cycle intermediates.

Authors:  M R Badger; T D Sharkey; S von Caemmerer
Journal:  Planta       Date:  1984-03       Impact factor: 4.116

8.  Metabolic profiling of transgenic tomato plants overexpressing hexokinase reveals that the influence of hexose phosphorylation diminishes during fruit development.

Authors:  Ute Roessner-Tunali; Björn Hegemann; Anna Lytovchenko; Fernando Carrari; Claudia Bruedigam; David Granot; Alisdair R Fernie
Journal:  Plant Physiol       Date:  2003-09       Impact factor: 8.340

9.  SlCCD7 controls strigolactone biosynthesis, shoot branching and mycorrhiza-induced apocarotenoid formation in tomato.

Authors:  Jonathan T Vogel; Michael H Walter; Patrick Giavalisco; Anna Lytovchenko; Wouter Kohlen; Tatsiana Charnikhova; Andrew J Simkin; Charles Goulet; Dieter Strack; Harro J Bouwmeester; Alisdair R Fernie; Harry J Klee
Journal:  Plant J       Date:  2009-10-20       Impact factor: 6.417

10.  Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations.

Authors:  Jan Lisec; Rhonda C Meyer; Matthias Steinfath; Henning Redestig; Martina Becher; Hanna Witucka-Wall; Oliver Fiehn; Ottó Törjék; Joachim Selbig; Thomas Altmann; Lothar Willmitzer
Journal:  Plant J       Date:  2007-11-28       Impact factor: 6.417
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  119 in total

1.  On the discordance of metabolomics with proteomics and transcriptomics: coping with increasing complexity in logic, chemistry, and network interactions scientific correspondence.

Authors:  Alisdair R Fernie; Mark Stitt
Journal:  Plant Physiol       Date:  2012-01-17       Impact factor: 8.340

2.  Autophagy Deficiency Compromises Alternative Pathways of Respiration following Energy Deprivation in Arabidopsis thaliana.

Authors:  Jessica A S Barros; João Henrique F Cavalcanti; David B Medeiros; Adriano Nunes-Nesi; Tamar Avin-Wittenberg; Alisdair R Fernie; Wagner L Araújo
Journal:  Plant Physiol       Date:  2017-07-14       Impact factor: 8.340

3.  Genetic analysis of the metabolome exemplified using a rice population.

Authors:  Liang Gong; Wei Chen; Yanqiang Gao; Xianqing Liu; Hongyan Zhang; Caiguo Xu; Sibin Yu; Qifa Zhang; Jie Luo
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-20       Impact factor: 11.205

4.  Global analysis of the role of autophagy in cellular metabolism and energy homeostasis in Arabidopsis seedlings under carbon starvation.

Authors:  Tamar Avin-Wittenberg; Krzysztof Bajdzienko; Gal Wittenberg; Saleh Alseekh; Takayuki Tohge; Ralph Bock; Patrick Giavalisco; Alisdair R Fernie
Journal:  Plant Cell       Date:  2015-02-03       Impact factor: 11.277

Review 5.  Plant metabolic modeling: achieving new insight into metabolism and metabolic engineering.

Authors:  Kambiz Baghalian; Mohammad-Reza Hajirezaei; Falk Schreiber
Journal:  Plant Cell       Date:  2014-10-24       Impact factor: 11.277

6.  Discovery of new modules in metabolic biology using ChemoMetabolomics.

Authors:  Samuel Bocobza; Lothar Willmitzer; Natasha V Raikhel; Asaph Aharoni
Journal:  Plant Physiol       Date:  2012-09-06       Impact factor: 8.340

7.  Flux profiling of photosynthetic carbon metabolism in intact plants.

Authors:  Robert Heise; Stéphanie Arrivault; Marek Szecowka; Takayuki Tohge; Adriano Nunes-Nesi; Mark Stitt; Zoran Nikoloski; Alisdair R Fernie
Journal:  Nat Protoc       Date:  2014-07-03       Impact factor: 13.491

8.  The Role of Abscisic Acid Signaling in Maintaining the Metabolic Balance Required for Arabidopsis Growth under Nonstress Conditions.

Authors:  Takuya Yoshida; Toshihiro Obata; Regina Feil; John E Lunn; Yasunari Fujita; Kazuko Yamaguchi-Shinozaki; Alisdair R Fernie
Journal:  Plant Cell       Date:  2019-01-03       Impact factor: 11.277

9.  Accurate prediction of retention in hydrophilic interaction chromatography by back calculation of high pressure liquid chromatography gradient profiles.

Authors:  Nu Wang; Paul G Boswell
Journal:  J Chromatogr A       Date:  2017-08-26       Impact factor: 4.759

10.  Decreasing the mitochondrial synthesis of malate in potato tubers does not affect plastidial starch synthesis, suggesting that the physiological regulation of ADPglucose pyrophosphorylase is context dependent.

Authors:  Marek Szecowka; Sonia Osorio; Toshihiro Obata; Wagner L Araújo; Johannes Rohrmann; Adriano Nunes-Nesi; Alisdair R Fernie
Journal:  Plant Physiol       Date:  2012-10-12       Impact factor: 8.340
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