Literature DB >> 12590110

Plant metabolomics: large-scale phytochemistry in the functional genomics era.

Lloyd W Sumner1, Pedro Mendes, Richard A Dixon.   

Abstract

Metabolomics or the large-scale phytochemical analysis of plants is reviewed in relation to functional genomics and systems biology. A historical account of the introduction and evolution of metabolite profiling into today's modern comprehensive metabolomics approach is provided. Many of the technologies used in metabolomics, including optical spectroscopy, nuclear magnetic resonance, and mass spectrometry are surveyed. The critical role of bioinformatics and various methods of data visualization are summarized and the future role of metabolomics in plant science assessed.

Mesh：

Year:  2003        PMID： 12590110     DOI： 10.1016/s0031-9422(02)00708-2

Source DB:  PubMed          Journal:  Phytochemistry        ISSN： 0031-9422            Impact factor:   4.072


  149 in total

1.  Profiling of Arabidopsis secondary metabolites by capillary liquid chromatography coupled to electrospray ionization quadrupole time-of-flight mass spectrometry.

Authors:  Edda von Roepenack-Lahaye; Thomas Degenkolb; Michael Zerjeski; Mathias Franz; Udo Roth; Ludger Wessjohann; Jürgen Schmidt; Dierk Scheel; Stephan Clemens
Journal:  Plant Physiol       Date:  2004-02       Impact factor: 8.340

Review 2.  Metabolomics of forage plants: a review.

Authors:  Susanne Rasmussen; Anthony J Parsons; Christopher S Jones
Journal:  Ann Bot       Date:  2012-02-19       Impact factor: 4.357

3.  Network analysis of enzyme activities and metabolite levels and their relationship to biomass in a large panel of Arabidopsis accessions.

Authors:  Ronan Sulpice; Sandra Trenkamp; Matthias Steinfath; Bjorn Usadel; Yves Gibon; Hanna Witucka-Wall; Eva-Theresa Pyl; Hendrik Tschoep; Marie Caroline Steinhauser; Manuela Guenther; Melanie Hoehne; Johann M Rohwer; Thomas Altmann; Alisdair R Fernie; Mark Stitt
Journal:  Plant Cell       Date:  2010-08-10       Impact factor: 11.277

4.  PyMS: a Python toolkit for processing of gas chromatography-mass spectrometry (GC-MS) data. Application and comparative study of selected tools.

Authors:  Sean O'Callaghan; David P De Souza; Andrew Isaac; Qiao Wang; Luke Hodkinson; Moshe Olshansky; Tim Erwin; Bill Appelbe; Dedreia L Tull; Ute Roessner; Antony Bacic; Malcolm J McConville; Vladimir A Likić
Journal:  BMC Bioinformatics       Date:  2012-05-30       Impact factor: 3.169

5.  Training in metabolomics research. I. Designing the experiment, collecting and extracting samples and generating metabolomics data.

Authors:  Stephen Barnes; H Paul Benton; Krista Casazza; Sara J Cooper; Xiangqin Cui; Xiuxia Du; Jeffrey Engler; Janusz H Kabarowski; Shuzhao Li; Wimal Pathmasiri; Jeevan K Prasain; Matthew B Renfrow; Hemant K Tiwari
Journal:  J Mass Spectrom       Date:  2016-07       Impact factor: 1.982

6.  Metabolite profiling of the hyphal exudates of Rhizophagus clarus and Rhizophagus irregularis under phosphorus deficiency.

Authors:  Nuri Luthfiana; Nozomi Inamura; Takumi Sato; Kazuki Saito; Akira Oikawa; Weiguo Chen; Keitaro Tawaraya
Journal:  Mycorrhiza       Date:  2021-01-18       Impact factor: 3.387

7.  In-Situ probing of the biotic-abiotic boundary of plants by laser desorption/ionization time-of-flight mass spectrometry.

Authors:  Chanan Sluszny; Edward S Yeung; Basil J Nikolau
Journal:  J Am Soc Mass Spectrom       Date:  2005-01       Impact factor: 3.109

Review 8.  Metabolomics and its role in understanding cellular responses in plants.

Authors:  Ritu Bhalla; Kothandaraman Narasimhan; Sanjay Swarup
Journal:  Plant Cell Rep       Date:  2005-11-16       Impact factor: 4.570

9.  Lotus japonicus metabolic profiling. Development of gas chromatography-mass spectrometry resources for the study of plant-microbe interactions.

Authors:  Guilhem G Desbrosses; Joachim Kopka; Michael K Udvardi
Journal:  Plant Physiol       Date:  2005-03-04       Impact factor: 8.340

10.  Elements required for an efficient NADP-malic enzyme type C4 photosynthesis.

Authors:  Yu Wang; Stephen P Long; Xin-Guang Zhu
Journal:  Plant Physiol       Date:  2014-02-12       Impact factor: 8.340
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