Literature DB >> 21769311

Modulating Accidental Fermi Resonance: What a Difference a Neutron Makes.

Jacob S Lipkin1, Rui Song, Edward E Fenlon, Scott H Brewer.   

Abstract

Vibrational reporters have shown significant promise as sensitive probes of local environments in proteins and nucleic acids. The utility of two potential vibrational probes, the cyanate and azide groups in phenyl cyanate and 3-azidopyridine, respectively, has been hindered by accidental Fermi resonance. Anharmonic coupling, between the fundamental -OCN or -N(3) asymmetric stretch vibration with a near resonant combination band, results in an extremely broad and complex absorption profile for each of these probes. A total of eight phenyl cyanate and six 3-azidopyridine isotopomers were synthesized and studied. Isotopic editing effectively modulated the accidental Fermi resonance - the absorption profiles of several isotopomers were greatly simplified while others remained complex. The origins of the observed profiles are discussed. Addition of a single neutron to the middle atom of the oscillator converted the absorption profile to essentially a single band resulting from either the cyanate or azide asymmetric stretch vibration.

Entities:  

Year:  2011        PMID: 21769311      PMCID: PMC3137378          DOI: 10.1021/jz2006447

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  33 in total

Review 1.  Coherent two-dimensional optical spectroscopy.

Authors:  Minhaeng Cho
Journal:  Chem Rev       Date:  2008-03-26       Impact factor: 60.622

2.  Tracking G-protein-coupled receptor activation using genetically encoded infrared probes.

Authors:  Shixin Ye; Ekaterina Zaitseva; Gianluigi Caltabiano; Gebhard F X Schertler; Thomas P Sakmar; Xavier Deupi; Reiner Vogel
Journal:  Nature       Date:  2010-04-11       Impact factor: 49.962

3.  Infrared line shape of an alpha-carbon deuterium-labeled amino acid.

Authors:  Carrie S Kinnaman; Matthew E Cremeens; Floyd E Romesberg; Steven A Corcelli
Journal:  J Am Chem Soc       Date:  2006-10-18       Impact factor: 15.419

4.  A direct comparison of azide and nitrile vibrational probes.

Authors:  Xin Sonia Gai; Basil A Coutifaris; Scott H Brewer; Edward E Fenlon
Journal:  Phys Chem Chem Phys       Date:  2011-02-18       Impact factor: 3.676

5.  A sensitive multispectroscopic probe for nucleic acids.

Authors:  Xin Sonia Gai; Edward E Fenlon; Scott H Brewer
Journal:  J Phys Chem B       Date:  2010-06-17       Impact factor: 2.991

6.  Cyanylated Cysteine: A Covalently Attached Vibrational Probe of Protein-Lipid Contacts.

Authors:  Heather A McMahon; Katherine N Alfieri; Katherine A A Clark; Casey H Londergan
Journal:  J Phys Chem Lett       Date:  2010-02-12       Impact factor: 6.475

7.  Probing protein folding using site-specifically encoded unnatural amino acids as FRET donors with tryptophan.

Authors:  Shigeki J Miyake-Stoner; Andrew M Miller; Jared T Hammill; Jennifer C Peeler; Kenneth R Hess; Ryan A Mehl; Scott H Brewer
Journal:  Biochemistry       Date:  2009-06-30       Impact factor: 3.162

8.  Using nitrile-derivatized amino acids as infrared probes of local environment.

Authors:  Zelleka Getahun; Cheng-Yen Huang; Ting Wang; Brenda De León; William F DeGrado; Feng Gai
Journal:  J Am Chem Soc       Date:  2003-01-15       Impact factor: 15.419

9.  Characterization of alkaline transitions in ferricytochrome c using carbon-deuterium infrared probes.

Authors:  Patrick Weinkam; Jörg Zimmermann; Laura B Sagle; Shigeo Matsuda; Philip E Dawson; Peter G Wolynes; Floyd E Romesberg
Journal:  Biochemistry       Date:  2008-12-23       Impact factor: 3.162

10.  2D IR photon echo study of the anharmonic coupling in the OCN region of phenyl cyanate.

Authors:  Matthew J Tucker; Yung Sam Kim; Robin M Hochstrasser
Journal:  Chem Phys Lett       Date:  2009-02-24       Impact factor: 2.328

View more
  16 in total

1.  Site-Specific Spectroscopic Reporters of the Local Electric Field, Hydration, Structure, and Dynamics of Biomolecules.

Authors:  Matthias M Waegele; Robert M Culik; Feng Gai
Journal:  J Phys Chem Lett       Date:  2011-09-23       Impact factor: 6.475

2.  Hydration and vibrational dynamics of betaine (N,N,N-trimethylglycine).

Authors:  Tanping Li; Yaowen Cui; John Mathaga; Revati Kumar; Daniel G Kuroda
Journal:  J Chem Phys       Date:  2015-06-07       Impact factor: 3.488

Review 3.  Applications of two-dimensional infrared spectroscopy.

Authors:  Amanda L Le Sueur; Rachel E Horness; Megan C Thielges
Journal:  Analyst       Date:  2015-07-07       Impact factor: 4.616

4.  Synthesis and Protein Incorporation of Azido-Modified Unnatural Amino Acids.

Authors:  Elise M Tookmanian; Edward E Fenlon; Scott H Brewer
Journal:  RSC Adv       Date:  2014-12-02       Impact factor: 3.361

Review 5.  Site-specific infrared probes of proteins.

Authors:  Jianqiang Ma; Ileana M Pazos; Wenkai Zhang; Robert M Culik; Feng Gai
Journal:  Annu Rev Phys Chem       Date:  2015-01-12       Impact factor: 12.703

6.  Transparent window 2D IR spectroscopy of proteins.

Authors:  Megan C Thielges
Journal:  J Chem Phys       Date:  2021-07-28       Impact factor: 3.488

7.  Tuning Molecular Vibrational Energy Flow within an Aromatic Scaffold via Anharmonic Coupling.

Authors:  Andrew J Schmitz; Hari Datt Pandey; Farzaneh Chalyavi; Tianjiao Shi; Edward E Fenlon; Scott H Brewer; David M Leitner; Matthew J Tucker
Journal:  J Phys Chem A       Date:  2019-12-03       Impact factor: 2.781

8.  Extending the vibrational lifetime of azides with heavy atoms.

Authors:  Farzaneh Chalyavi; Andrew J Schmitz; Natalie R Fetto; Matthew J Tucker; Scott H Brewer; Edward E Fenlon
Journal:  Phys Chem Chem Phys       Date:  2020-08-24       Impact factor: 3.676

9.  Azidoethoxyphenylalanine as a Vibrational Reporter and Click Chemistry Partner in Proteins.

Authors:  Elise M Tookmanian; Christine M Phillips-Piro; Edward E Fenlon; Scott H Brewer
Journal:  Chemistry       Date:  2015-11-26       Impact factor: 5.236

10.  Synthesis and Evaluation of the Sensitivity and Vibrational Lifetimes of Thiocyanate and Selenocyanate Infrared Reporters.

Authors:  Daniel E Levin; Andrew J Schmitz; Shawn M Hines; Kevin J Hines; Matthew J Tucker; Scott H Brewer; Edward E Fenlon
Journal:  RSC Adv       Date:  2016-04-12       Impact factor: 3.361

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.