Literature DB >> 32749405

Extending the vibrational lifetime of azides with heavy atoms.

Farzaneh Chalyavi1, Andrew J Schmitz2, Natalie R Fetto2, Matthew J Tucker2, Scott H Brewer3, Edward E Fenlon3.   

Abstract

The development of novel vibrational reporters (VRs), aka infrared (IR) probes, to study local environments and dynamic processes in biomolecules and materials continues to be an important area of research. Azides are important VRs because of their small size and large transition dipole strengths, however, their relatively short vibrational lifetimes (<2 ps) have limited their full potential. Herein we report that the vibrational lifetimes of azides can be increased by attaching them to heavy atoms and by using heavy 15N isotopes. Three group 14 atom triphenyl azides (Ph3CN3, Ph3SiN3, Ph3SnN3), and their triple-15N isotopomers, were synthesized in good yields. Tributyltin azide and its heavy isotopomer (Bu3Sn15N3) were also prepared to probe the effect of molecular scaffolding. The extinction coefficients for the natural abundance azides were determined, ranging from 900 to 1500 M-1 cm-1. The vibrational lifetimes of all azides were measured by pump-probe IR spectroscopy and each showed a major component with a short-to-moderate vibrational lifetime and a minor component with a much longer vibrational lifetime. Based on these results, the lifetime, aka the observation window, of an azide reporter can be extended from ∼2 ps to as long as ∼300 ps by a combination of isotopic labeling and heavy atom effect. 2D IR measurements of these compounds further confirmed the ability to observe these azide transitions at much longer timescales showing their utility to capture dynamic processes from tens to hundreds of picoseconds.

Entities:  

Year:  2020        PMID: 32749405      PMCID: PMC8276756          DOI: 10.1039/d0cp02814b

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  45 in total

1.  2D attenuated total reflectance infrared spectroscopy reveals ultrafast vibrational dynamics of organic monolayers at metal-liquid interfaces.

Authors:  Jan Philip Kraack; Davide Lotti; Peter Hamm
Journal:  J Chem Phys       Date:  2015-06-07       Impact factor: 3.488

Review 2.  Transparent Window Vibrational Probes for the Characterization of Proteins With High Structural and Temporal Resolution.

Authors:  Ramkrishna Adhikary; Jörg Zimmermann; Floyd E Romesberg
Journal:  Chem Rev       Date:  2017-01-20       Impact factor: 60.622

Review 3.  Site-specific infrared probes of proteins.

Authors:  Jianqiang Ma; Ileana M Pazos; Wenkai Zhang; Robert M Culik; Feng Gai
Journal:  Annu Rev Phys Chem       Date:  2015-01-12       Impact factor: 12.703

4.  Tyrosine as a Non-perturbing Site-Specific Vibrational Reporter for Protein Dynamics.

Authors:  Farzaneh Chalyavi; David G Hogle; Matthew J Tucker
Journal:  J Phys Chem B       Date:  2017-06-22       Impact factor: 2.991

5.  Expanding the utility of 4-cyano-L-phenylalanine as a vibrational reporter of protein environments.

Authors:  Christopher G Bazewicz; Jacob S Lipkin; Emily E Smith; Melanie T Liskov; Scott H Brewer
Journal:  J Phys Chem B       Date:  2012-08-22       Impact factor: 2.991

6.  Two-dimensional infrared spectroscopy of metal carbonyls.

Authors:  Carlos R Baiz; Porscha L McRobbie; Jessica M Anna; Eitan Geva; Kevin J Kubarych
Journal:  Acc Chem Res       Date:  2009-09-15       Impact factor: 22.384

7.  Sensitive, site-specific, and stable vibrational probe of local protein environments: 4-azidomethyl-L-phenylalanine.

Authors:  Christopher G Bazewicz; Melanie T Liskov; Kevin J Hines; Scott H Brewer
Journal:  J Phys Chem B       Date:  2013-07-18       Impact factor: 2.991

Review 8.  Nitrile groups as vibrational probes of biomolecular structure and dynamics: an overview.

Authors:  Beth A Lindquist; Kristina E Furse; Steven A Corcelli
Journal:  Phys Chem Chem Phys       Date:  2009-07-31       Impact factor: 3.676

9.  Synthesis of 5-Cyano-Tryptophan as a Two-Dimensional Infrared Spectroscopic Reporter of Structure.

Authors:  Farzaneh Chalyavi; Philip H Gilmartin; Andrew J Schmitz; Michael W Fennie; Matthew J Tucker
Journal:  Angew Chem Int Ed Engl       Date:  2018-05-29       Impact factor: 15.336

10.  Exploring local solvation environments of a heme protein using the spectroscopic reporter 4-cyano-l-phenylalanine.

Authors:  Caroline Kearney; Lukasz T Olenginski; Trexler D Hirn; Gwendolyn D Fowler; Daniyal Tariq; Scott H Brewer; Christine M Phillips-Piro
Journal:  RSC Adv       Date:  2018-04-10       Impact factor: 4.036

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  2 in total

1.  Protein Dynamics by Two-Dimensional Infrared Spectroscopy.

Authors:  Goran W Tumbic; Md Yeathad Hossan; Megan C Thielges
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2021-07-27       Impact factor: 12.400

2.  Versatile Vibrational Energy Sensors for Proteins.

Authors:  Jan G Löffler; Erhan Deniz; Carolin Feid; Valentin G Franz; Jens Bredenbeck
Journal:  Angew Chem Int Ed Engl       Date:  2022-04-06       Impact factor: 16.823

  2 in total

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