Literature DB >> 21763715

Efficient probabilistic model personalization integrating uncertainty on data and parameters: Application to eikonal-diffusion models in cardiac electrophysiology.

Ender Konukoglu1, Jatin Relan, Ulas Cilingir, Bjoern H Menze, Phani Chinchapatnam, Amir Jadidi, Hubert Cochet, Mélèze Hocini, Hervé Delingette, Pierre Jaïs, Michel Haïssaguerre, Nicholas Ayache, Maxime Sermesant.   

Abstract

Biophysical models are increasingly used for medical applications at the organ scale. However, model predictions are rarely associated with a confidence measure although there are important sources of uncertainty in computational physiology methods. For instance, the sparsity and noise of the clinical data used to adjust the model parameters (personalization), and the difficulty in modeling accurately soft tissue physiology. The recent theoretical progresses in stochastic models make their use computationally tractable, but there is still a challenge in estimating patient-specific parameters with such models. In this work we propose an efficient Bayesian inference method for model personalization using polynomial chaos and compressed sensing. This method makes Bayesian inference feasible in real 3D modeling problems. We demonstrate our method on cardiac electrophysiology. We first present validation results on synthetic data, then we apply the proposed method to clinical data. We demonstrate how this can help in quantifying the impact of the data characteristics on the personalization (and thus prediction) results. Described method can be beneficial for the clinical use of personalized models as it explicitly takes into account the uncertainties on the data and the model parameters while still enabling simulations that can be used to optimize treatment. Such uncertainty handling can be pivotal for the proper use of modeling as a clinical tool, because there is a crucial requirement to know the confidence one can have in personalized models.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21763715     DOI: 10.1016/j.pbiomolbio.2011.07.002

Source DB:  PubMed          Journal:  Prog Biophys Mol Biol        ISSN: 0079-6107            Impact factor:   3.667


  26 in total

Review 1.  Computational modeling of the human atrial anatomy and electrophysiology.

Authors:  Olaf Dössel; Martin W Krueger; Frank M Weber; Mathias Wilhelms; Gunnar Seemann
Journal:  Med Biol Eng Comput       Date:  2012-06-21       Impact factor: 2.602

2.  Characterisation of human AV-nodal properties using a network model.

Authors:  Mikael Wallman; Frida Sandberg
Journal:  Med Biol Eng Comput       Date:  2017-07-13       Impact factor: 2.602

3.  Quantifying the uncertainty in model parameters using Gaussian process-based Markov chain Monte Carlo in cardiac electrophysiology.

Authors:  Jwala Dhamala; Hermenegild J Arevalo; John Sapp; B Milan Horácek; Katherine C Wu; Natalia A Trayanova; Linwei Wang
Journal:  Med Image Anal       Date:  2018-05-17       Impact factor: 8.545

4.  Fundamental principles of data assimilation underlying the Verdandi library: applications to biophysical model personalization within euHeart.

Authors:  D Chapelle; M Fragu; V Mallet; P Moireau
Journal:  Med Biol Eng Comput       Date:  2012-11-07       Impact factor: 2.602

5.  Sensitivity analysis of an electrophysiology model for the left ventricle.

Authors:  Giulio Del Corso; Roberto Verzicco; Francesco Viola
Journal:  J R Soc Interface       Date:  2020-10-28       Impact factor: 4.118

6.  Identifying model inaccuracies and solution uncertainties in noninvasive activation-based imaging of cardiac excitation using convex relaxation.

Authors:  Burak Erem; Peter M van Dam; Dana H Brooks
Journal:  IEEE Trans Med Imaging       Date:  2014-04       Impact factor: 10.048

7.  Spatially Adaptive Multi-Scale Optimization for Local Parameter Estimation in Cardiac Electrophysiology.

Authors:  Jwala Dhamala; Hermenegild J Arevalo; John Sapp; Milan Horacek; Katherine C Wu; Natalia A Trayanova; Linwei Wang
Journal:  IEEE Trans Med Imaging       Date:  2017-04-25       Impact factor: 10.048

Review 8.  Using physiologically based models for clinical translation: predictive modelling, data interpretation or something in-between?

Authors:  Steven A Niederer; Nic P Smith
Journal:  J Physiol       Date:  2016-07-03       Impact factor: 5.182

9.  Patient-specific modeling of dyssynchronous heart failure: a case study.

Authors:  Jazmin Aguado-Sierra; Adarsh Krishnamurthy; Christopher Villongco; Joyce Chuang; Elliot Howard; Matthew J Gonzales; Jeff Omens; David E Krummen; Sanjiv Narayan; Roy C P Kerckhoffs; Andrew D McCulloch
Journal:  Prog Biophys Mol Biol       Date:  2011-07-07       Impact factor: 3.667

Review 10.  Computational techniques for ECG analysis and interpretation in light of their contribution to medical advances.

Authors:  Aurore Lyon; Ana Mincholé; Juan Pablo Martínez; Pablo Laguna; Blanca Rodriguez
Journal:  J R Soc Interface       Date:  2018-01       Impact factor: 4.118

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