Literature DB >> 23132524

Fundamental principles of data assimilation underlying the Verdandi library: applications to biophysical model personalization within euHeart.

D Chapelle1, M Fragu, V Mallet, P Moireau.   

Abstract

We present the fundamental principles of data assimilation underlying the Verdandi library, and how they are articulated with the modular architecture of the library. This translates--in particular--into the definition of standardized interfaces through which the data assimilation library interoperates with the model simulation software and the so-called observation manager. We also survey various examples of data assimilation applied to the personalization of biophysical models, in particular, for cardiac modeling applications within the euHeart European project. This illustrates the power of data assimilation concepts in such novel applications, with tremendous potential in clinical diagnosis assistance.

Mesh:

Year:  2012        PMID: 23132524     DOI: 10.1007/s11517-012-0969-6

Source DB:  PubMed          Journal:  Med Biol Eng Comput        ISSN: 0140-0118            Impact factor:   2.602


  8 in total

1.  Building maps of local apparent conductivity of the epicardium with a 2-D electrophysiological model of the heart.

Authors:  Valérie Moreau-Villéger; Hervé Delingette; Maxime Sermesant; Hiroshi Ashikaga; Elliot McVeigh; Nicholas Ayache
Journal:  IEEE Trans Biomed Eng       Date:  2006-08       Impact factor: 4.538

2.  Efficient probabilistic model personalization integrating uncertainty on data and parameters: Application to eikonal-diffusion models in cardiac electrophysiology.

Authors:  Ender Konukoglu; Jatin Relan; Ulas Cilingir; Bjoern H Menze; Phani Chinchapatnam; Amir Jadidi; Hubert Cochet; Mélèze Hocini; Hervé Delingette; Pierre Jaïs; Michel Haïssaguerre; Nicholas Ayache; Maxime Sermesant
Journal:  Prog Biophys Mol Biol       Date:  2011-07-07       Impact factor: 3.667

3.  Myocardial transversely isotropic material parameter estimation from in-silico measurements based on a reduced-order unscented Kalman filter.

Authors:  Jiahe Xi; Pablo Lamata; Jack Lee; Philippe Moireau; Dominique Chapelle; Nic Smith
Journal:  J Mech Behav Biomed Mater       Date:  2011-03-27

4.  Sequential parameter estimation for fluid-structure problems: application to hemodynamics.

Authors:  Cristóbal Bertoglio; Philippe Moireau; Jean-Frederic Gerbeau
Journal:  Int J Numer Method Biomed Eng       Date:  2011-11-08       Impact factor: 2.747

5.  Estimation of tissue contractility from cardiac cine-MRI using a biomechanical heart model.

Authors:  R Chabiniok; P Moireau; P-F Lesault; A Rahmouni; J-F Deux; D Chapelle
Journal:  Biomech Model Mechanobiol       Date:  2011-07-28

6.  Coupled personalization of cardiac electrophysiology models for prediction of ischaemic ventricular tachycardia.

Authors:  Jatin Relan; Phani Chinchapatnam; Maxime Sermesant; Kawal Rhode; Matt Ginks; Hervé Delingette; C Aldo Rinaldi; Reza Razavi; Nicholas Ayache
Journal:  Interface Focus       Date:  2011-03-30       Impact factor: 3.906

7.  euHeart: personalized and integrated cardiac care using patient-specific cardiovascular modelling.

Authors:  Nic Smith; Adelaide de Vecchi; Matthew McCormick; David Nordsletten; Oscar Camara; Alejandro F Frangi; Hervé Delingette; Maxime Sermesant; Jatin Relan; Nicholas Ayache; Martin W Krueger; Walther H W Schulze; Rod Hose; Israel Valverde; Philipp Beerbaum; Cristina Staicu; Maria Siebes; Jos Spaan; Peter Hunter; Juergen Weese; Helko Lehmann; Dominique Chapelle; Reza Rezavi
Journal:  Interface Focus       Date:  2011-04-01       Impact factor: 3.906

8.  Personalization of cardiac motion and contractility from images using variational data assimilation.

Authors:  Herve Delingette; Florence Billet; Ken C L Wong; Maxime Sermesant; Kawal Rhode; Matthew Ginks; C Aldo Rinaldi; Reza Razavi; Nicholas Ayache
Journal:  IEEE Trans Biomed Eng       Date:  2011-06-27       Impact factor: 4.538

  8 in total
  4 in total

Review 1.  Multiphysics and multiscale modelling, data-model fusion and integration of organ physiology in the clinic: ventricular cardiac mechanics.

Authors:  Radomir Chabiniok; Vicky Y Wang; Myrianthi Hadjicharalambous; Liya Asner; Jack Lee; Maxime Sermesant; Ellen Kuhl; Alistair A Young; Philippe Moireau; Martyn P Nash; Dominique Chapelle; David A Nordsletten
Journal:  Interface Focus       Date:  2016-04-06       Impact factor: 3.906

2.  Efficient estimation of personalized biventricular mechanical function employing gradient-based optimization.

Authors:  Henrik Finsberg; Ce Xi; Ju Le Tan; Liang Zhong; Martin Genet; Joakim Sundnes; Lik Chuan Lee; Samuel T Wall
Journal:  Int J Numer Method Biomed Eng       Date:  2018-04-22       Impact factor: 2.747

3.  Optimal B-spline Mapping of Flow Imaging Data for Imposing Patient-specific Velocity Profiles in Computational Hemodynamics.

Authors:  Alberto Gomez; Marija Marcan; Christopher Arthurs; Robert Wright; Pouya Youssefi; Marjan Jahangiri; Alberto Figueroa
Journal:  IEEE Trans Biomed Eng       Date:  2018-12-11       Impact factor: 4.538

4.  A flexible framework for sequential estimation of model parameters in computational hemodynamics.

Authors:  Christopher J Arthurs; Nan Xiao; Philippe Moireau; Tobias Schaeffter; C Alberto Figueroa
Journal:  Adv Model Simul Eng Sci       Date:  2020-12-02
  4 in total

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