Literature DB >> 21754824

9-(3,4-Dimeth-oxy-phen-yl)-3,4,5,6,7,9-hexa-hydroxanthene-1,8(2H)-dione.

Sayed Hasan Mehdi, Rokiah Hashim, Raza Murad Ghalib, Chin Sing Yeap, Hoong-Kun Fun.   

Abstract

In the title compound, C(21)H(22)O(5), the mean planes of the pyran and dimeth-oxy-phenyl rings are nearly perpendicular to one another, with the dihedral angle between them being 88.21 (8)°. The pyran ring adopts a boat conformation whereas the two fused cyclo-hexane rings adopt envelope conformations. In the crystal, mol-ecules are linked into a three-dimensional network by inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 21754824      PMCID: PMC3120437          DOI: 10.1107/S1600536811017867

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For condensation reactions between carbonyl compounds with active methyl­ene compounds, see: Chalais et al. (1985 ▶); Prajapati & Sanduh (1993 ▶); Texier-Boullet & Foucaud (1982 ▶); Jone (1967 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶). For ring conformations, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C21H22O5 M = 354.39 Monoclinic, a = 8.7733 (3) Å b = 15.2246 (5) Å c = 14.6646 (4) Å β = 116.891 (2)° V = 1746.95 (10) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.58 × 0.30 × 0.18 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.947, T max = 0.983 19254 measured reflections 5118 independent reflections 4066 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.130 S = 1.05 5118 reflections 237 parameters H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811017867/bq2301sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811017867/bq2301Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811017867/bq2301Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H22O5F(000) = 752
Mr = 354.39Dx = 1.347 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6186 reflections
a = 8.7733 (3) Åθ = 2.6–30.0°
b = 15.2246 (5) ŵ = 0.10 mm1
c = 14.6646 (4) ÅT = 100 K
β = 116.891 (2)°Block, yellow
V = 1746.95 (10) Å30.58 × 0.30 × 0.18 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer5118 independent reflections
Radiation source: fine-focus sealed tube4066 reflections with I > 2σ(I)
graphiteRint = 0.042
φ and ω scansθmax = 30.1°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −12→9
Tmin = 0.947, Tmax = 0.983k = −21→18
19254 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.130H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0608P)2 + 0.471P] where P = (Fo2 + 2Fc2)/3
5118 reflections(Δ/σ)max < 0.001
237 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = −0.28 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.23678 (10)0.45054 (6)0.11930 (7)0.0253 (2)
O2−0.11008 (12)0.63020 (7)0.40709 (7)0.0307 (2)
O30.34649 (11)0.44914 (7)0.36290 (7)0.0293 (2)
O40.46323 (11)0.77498 (6)0.38751 (7)0.0252 (2)
O50.31222 (11)0.84133 (6)0.20530 (7)0.0254 (2)
C1−0.16143 (15)0.54404 (8)0.26377 (9)0.0212 (2)
C2−0.21561 (16)0.59572 (9)0.32848 (10)0.0240 (3)
C3−0.40468 (17)0.60323 (10)0.29722 (11)0.0296 (3)
H3A−0.42780.66190.31730.035*
H3B−0.43590.55880.33520.035*
C4−0.51736 (17)0.59051 (10)0.18363 (11)0.0317 (3)
H4A−0.50690.64240.14610.038*
H4B−0.63810.58590.17060.038*
C5−0.46837 (16)0.50797 (10)0.14364 (10)0.0269 (3)
H5A−0.50660.45530.16720.032*
H5B−0.52680.50830.06800.032*
C6−0.27955 (15)0.50362 (9)0.18052 (9)0.0220 (2)
C7−0.06793 (15)0.42479 (9)0.15659 (9)0.0219 (2)
C8−0.04677 (16)0.35533 (9)0.09158 (10)0.0259 (3)
H8A−0.11710.37000.01850.031*
H8B−0.08710.29840.10510.031*
C90.14076 (16)0.34741 (9)0.11409 (10)0.0260 (3)
H9A0.15670.29420.08050.031*
H9B0.17390.39910.08620.031*
C100.25342 (16)0.34178 (9)0.22886 (10)0.0263 (3)
H10A0.22530.28760.25550.032*
H10B0.37460.33810.24270.032*
C110.22973 (15)0.42044 (8)0.28392 (10)0.0225 (2)
C120.05790 (14)0.45987 (8)0.24136 (9)0.0205 (2)
C130.02759 (14)0.53739 (8)0.29541 (9)0.0199 (2)
H13A0.08920.52680.37080.024*
C140.09637 (14)0.62177 (8)0.27121 (9)0.0200 (2)
C150.01165 (15)0.66138 (9)0.17626 (10)0.0229 (3)
H15A−0.09310.63720.12690.028*
C160.07768 (15)0.73634 (8)0.15190 (9)0.0225 (3)
H16A0.01750.76310.08670.027*
C170.23114 (15)0.77157 (8)0.22307 (9)0.0213 (2)
C180.31465 (14)0.73401 (8)0.32119 (9)0.0206 (2)
C190.24887 (14)0.65911 (8)0.34429 (9)0.0210 (2)
H19A0.30750.63300.41000.025*
C200.54591 (18)0.74117 (11)0.48942 (10)0.0346 (3)
H20A0.64720.77670.53040.052*
H20B0.58040.68020.48790.052*
H20C0.46680.74350.51980.052*
C210.23844 (18)0.87415 (10)0.10281 (10)0.0292 (3)
H21A0.21850.82530.05520.044*
H21B0.31670.91650.09590.044*
H21C0.12960.90310.08710.044*
U11U22U33U12U13U23
O10.0120 (4)0.0367 (5)0.0227 (4)0.0006 (4)0.0037 (3)−0.0034 (4)
O20.0227 (5)0.0359 (5)0.0304 (5)0.0013 (4)0.0094 (4)−0.0061 (4)
O30.0163 (4)0.0326 (5)0.0286 (5)0.0025 (4)0.0011 (4)−0.0044 (4)
O40.0158 (4)0.0308 (5)0.0219 (4)−0.0054 (4)0.0021 (3)−0.0042 (4)
O50.0195 (4)0.0279 (5)0.0243 (4)−0.0053 (4)0.0060 (4)0.0001 (4)
C10.0141 (5)0.0245 (6)0.0237 (6)0.0015 (4)0.0072 (4)0.0024 (5)
C20.0185 (5)0.0238 (6)0.0290 (6)0.0017 (5)0.0102 (5)0.0021 (5)
C30.0197 (6)0.0320 (7)0.0388 (7)0.0028 (5)0.0148 (6)−0.0020 (6)
C40.0181 (6)0.0386 (8)0.0367 (7)0.0058 (5)0.0108 (5)0.0064 (6)
C50.0129 (5)0.0376 (7)0.0253 (6)0.0017 (5)0.0044 (5)0.0022 (5)
C60.0139 (5)0.0278 (6)0.0230 (6)0.0015 (5)0.0071 (4)0.0023 (5)
C70.0129 (5)0.0268 (6)0.0240 (6)−0.0001 (4)0.0065 (4)0.0013 (5)
C80.0187 (6)0.0313 (7)0.0256 (6)−0.0031 (5)0.0082 (5)−0.0054 (5)
C90.0188 (6)0.0306 (7)0.0284 (6)−0.0010 (5)0.0106 (5)−0.0045 (5)
C100.0181 (6)0.0266 (6)0.0308 (7)0.0027 (5)0.0081 (5)−0.0016 (5)
C110.0151 (5)0.0238 (6)0.0254 (6)−0.0002 (4)0.0065 (5)0.0014 (5)
C120.0138 (5)0.0229 (6)0.0222 (5)0.0005 (4)0.0059 (4)0.0007 (4)
C130.0121 (5)0.0243 (6)0.0199 (5)0.0004 (4)0.0043 (4)0.0000 (4)
C140.0125 (5)0.0241 (6)0.0217 (5)0.0013 (4)0.0063 (4)−0.0020 (4)
C150.0126 (5)0.0263 (6)0.0233 (6)−0.0005 (4)0.0023 (4)−0.0013 (5)
C160.0159 (5)0.0261 (6)0.0204 (5)0.0017 (5)0.0039 (4)0.0007 (5)
C170.0161 (5)0.0227 (6)0.0240 (6)−0.0001 (4)0.0081 (5)−0.0030 (5)
C180.0112 (5)0.0256 (6)0.0214 (5)−0.0005 (4)0.0044 (4)−0.0055 (5)
C190.0136 (5)0.0270 (6)0.0191 (5)0.0018 (4)0.0045 (4)−0.0023 (4)
C200.0244 (7)0.0513 (9)0.0197 (6)−0.0129 (6)0.0027 (5)−0.0044 (6)
C210.0289 (7)0.0315 (7)0.0244 (6)−0.0070 (6)0.0095 (5)−0.0010 (5)
O1—C61.3800 (15)C9—C101.5205 (19)
O1—C71.3836 (14)C9—H9A0.9900
O2—C21.2231 (16)C9—H9B0.9900
O3—C111.2283 (15)C10—C111.5103 (18)
O4—C181.3738 (14)C10—H10A0.9900
O4—C201.4297 (16)C10—H10B0.9900
O5—C171.3674 (15)C11—C121.4736 (16)
O5—C211.4309 (16)C12—C131.5108 (17)
C1—C61.3411 (17)C13—C141.5277 (17)
C1—C21.4676 (17)C13—H13A1.0000
C1—C131.5099 (16)C14—C151.3852 (17)
C2—C31.5122 (17)C14—C191.4017 (16)
C3—C41.517 (2)C15—C161.3975 (18)
C3—H3A0.9900C15—H15A0.9500
C3—H3B0.9900C16—C171.3851 (16)
C4—C51.528 (2)C16—H16A0.9500
C4—H4A0.9900C17—C181.4074 (17)
C4—H4B0.9900C18—C191.3874 (18)
C5—C61.4935 (17)C19—H19A0.9500
C5—H5A0.9900C20—H20A0.9800
C5—H5B0.9900C20—H20B0.9800
C7—C121.3446 (17)C20—H20C0.9800
C7—C81.4906 (18)C21—H21A0.9800
C8—C91.5294 (17)C21—H21B0.9800
C8—H8A0.9900C21—H21C0.9800
C8—H8B0.9900
C6—O1—C7117.80 (9)C9—C10—H10A109.3
C18—O4—C20116.55 (10)C11—C10—H10B109.3
C17—O5—C21116.37 (10)C9—C10—H10B109.3
C6—C1—C2119.46 (11)H10A—C10—H10B107.9
C6—C1—C13122.55 (11)O3—C11—C12120.76 (12)
C2—C1—C13117.98 (11)O3—C11—C10121.91 (11)
O2—C2—C1120.73 (11)C12—C11—C10117.29 (11)
O2—C2—C3120.81 (12)C7—C12—C11118.98 (11)
C1—C2—C3118.43 (11)C7—C12—C13121.98 (10)
C2—C3—C4113.83 (11)C11—C12—C13119.03 (10)
C2—C3—H3A108.8C1—C13—C12108.70 (10)
C4—C3—H3A108.8C1—C13—C14111.50 (10)
C2—C3—H3B108.8C12—C13—C14110.69 (9)
C4—C3—H3B108.8C1—C13—H13A108.6
H3A—C3—H3B107.7C12—C13—H13A108.6
C3—C4—C5111.70 (11)C14—C13—H13A108.6
C3—C4—H4A109.3C15—C14—C19118.98 (11)
C5—C4—H4A109.3C15—C14—C13120.72 (10)
C3—C4—H4B109.3C19—C14—C13120.28 (11)
C5—C4—H4B109.3C14—C15—C16121.10 (11)
H4A—C4—H4B107.9C14—C15—H15A119.4
C6—C5—C4110.85 (11)C16—C15—H15A119.4
C6—C5—H5A109.5C17—C16—C15119.84 (11)
C4—C5—H5A109.5C17—C16—H16A120.1
C6—C5—H5B109.5C15—C16—H16A120.1
C4—C5—H5B109.5O5—C17—C16124.70 (11)
H5A—C5—H5B108.1O5—C17—C18115.81 (10)
C1—C6—O1122.37 (10)C16—C17—C18119.48 (11)
C1—C6—C5125.67 (12)O4—C18—C19124.51 (11)
O1—C6—C5111.95 (11)O4—C18—C17115.33 (11)
C12—C7—O1122.51 (11)C19—C18—C17120.13 (11)
C12—C7—C8125.84 (11)C18—C19—C14120.35 (11)
O1—C7—C8111.66 (10)C18—C19—H19A119.8
C7—C8—C9110.54 (10)C14—C19—H19A119.8
C7—C8—H8A109.5O4—C20—H20A109.5
C9—C8—H8A109.5O4—C20—H20B109.5
C7—C8—H8B109.5H20A—C20—H20B109.5
C9—C8—H8B109.5O4—C20—H20C109.5
H8A—C8—H8B108.1H20A—C20—H20C109.5
C10—C9—C8109.91 (11)H20B—C20—H20C109.5
C10—C9—H9A109.7O5—C21—H21A109.5
C8—C9—H9A109.7O5—C21—H21B109.5
C10—C9—H9B109.7H21A—C21—H21B109.5
C8—C9—H9B109.7O5—C21—H21C109.5
H9A—C9—H9B108.2H21A—C21—H21C109.5
C11—C10—C9111.68 (11)H21B—C21—H21C109.5
C11—C10—H10A109.3
C6—C1—C2—O2176.94 (12)C10—C11—C12—C13178.63 (11)
C13—C1—C2—O2−1.98 (19)C6—C1—C13—C12−17.44 (16)
C6—C1—C2—C3−1.40 (18)C2—C1—C13—C12161.44 (11)
C13—C1—C2—C3179.68 (11)C6—C1—C13—C14104.85 (14)
O2—C2—C3—C4156.87 (13)C2—C1—C13—C14−76.26 (14)
C1—C2—C3—C4−24.78 (18)C7—C12—C13—C119.86 (16)
C2—C3—C4—C549.18 (16)C11—C12—C13—C1−158.95 (11)
C3—C4—C5—C6−47.29 (15)C7—C12—C13—C14−102.92 (13)
C2—C1—C6—O1−176.73 (11)C11—C12—C13—C1478.27 (13)
C13—C1—C6—O12.14 (19)C1—C13—C14—C15−47.46 (15)
C2—C1—C6—C52.0 (2)C12—C13—C14—C1573.68 (13)
C13—C1—C6—C5−179.18 (12)C1—C13—C14—C19134.08 (11)
C7—O1—C6—C113.08 (18)C12—C13—C14—C19−104.78 (12)
C7—O1—C6—C5−165.77 (11)C19—C14—C15—C161.38 (18)
C4—C5—C6—C123.06 (18)C13—C14—C15—C16−177.10 (11)
C4—C5—C6—O1−158.14 (11)C14—C15—C16—C170.62 (19)
C6—O1—C7—C12−10.48 (18)C21—O5—C17—C16−5.67 (18)
C6—O1—C7—C8169.57 (11)C21—O5—C17—C18173.51 (11)
C12—C7—C8—C9−16.76 (18)C15—C16—C17—O5175.93 (11)
O1—C7—C8—C9163.19 (11)C15—C16—C17—C18−3.22 (18)
C7—C8—C9—C1048.72 (15)C20—O4—C18—C19−5.34 (18)
C8—C9—C10—C11−57.64 (15)C20—O4—C18—C17176.71 (11)
C9—C10—C11—O3−148.95 (12)O5—C17—C18—O42.67 (16)
C9—C10—C11—C1233.42 (16)C16—C17—C18—O4−178.10 (11)
O1—C7—C12—C11171.57 (11)O5—C17—C18—C19−175.38 (10)
C8—C7—C12—C11−8.48 (19)C16—C17—C18—C193.84 (18)
O1—C7—C12—C13−7.24 (19)O4—C18—C19—C14−179.71 (11)
C8—C7—C12—C13172.71 (12)C17—C18—C19—C14−1.85 (18)
O3—C11—C12—C7−177.87 (12)C15—C14—C19—C18−0.75 (17)
C10—C11—C12—C7−0.21 (17)C13—C14—C19—C18177.73 (10)
O3—C11—C12—C130.98 (18)
D—H···AD—HH···AD···AD—H···A
C3—H3A···O4i0.992.413.3647 (18)161
C5—H5A···O5ii0.992.563.2366 (17)126
C9—H9A···O2ii0.992.553.3210 (17)135
C10—H10B···O5iii0.992.503.4822 (19)173
C21—H21C···O2iv0.982.573.1069 (18)114
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3A⋯O4i0.992.413.3647 (18)161
C5—H5A⋯O5ii0.992.563.2366 (17)126
C9—H9A⋯O2ii0.992.553.3210 (17)135
C10—H10B⋯O5iii0.992.503.4822 (19)173
C21—H21C⋯O2iv0.982.573.1069 (18)114

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  2 in total
  4 in total

1.  9-(3,4-Dimeth-oxy-phen-yl)-3,3,6,6-tetra-methyl-4,5,6,9-tetra-hydro-3H-xanthene-1,8(2H,7H)-dione.

Authors:  Sayed Hasan Mehdi; Othman Sulaiman; Raza Murad Ghalib; Chin Sing Yeap; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-18

2.  2,2'-[(3-Bromo-4-hy-droxy-5-meth-oxy-phen-yl)methyl-idene]bis-(3-hy-droxy-5,5-dimethyl-cyclo-hex-2-en-1-one).

Authors:  V Sughanya; N Sureshbabu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-08

3.  2,2'-[(4-Eth-oxy-phen-yl)methyl-ene]bis-(3-hy-droxy-5,5-dimethyl-cyclo-hex-2-en-1-one).

Authors:  N Sureshbabu; V Sughanya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-04

4.  9-(4-Hy-droxy-3,5-dimeth-oxy-phen-yl)-3,3,6,6-tetra-methyl-3,4,5,6,7,9-hexa-hydro-1H-xanthene-1,8(2H)-dione.

Authors:  V Sughanya; N Sureshbabu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-14
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.