Literature DB >> 22969538

2,2'-[(4-Eth-oxy-phen-yl)methyl-ene]bis-(3-hy-droxy-5,5-dimethyl-cyclo-hex-2-en-1-one).

N Sureshbabu1, V Sughanya.   

Abstract

In the title compound, C(25)H(32)O(5), the two cyclo-hexenone rings have envelope conformations with the C atom bearing two methyl groups as the flap atom in each ring. Relatively strong intra-molecular O-H⋯O hydrogen bonds are observed.

Entities:  

Year:  2012        PMID: 22969538      PMCID: PMC3435667          DOI: 10.1107/S1600536812033934

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of bis­dimedones, see: Vang & Stankevich (1960 ▶); Hilderbrand & Weissleder (2007 ▶). For their pharmaceutical properties, see: Lambert et al. (1997 ▶); Poupelin et al. (1978 ▶); Hideo (1981 ▶); Selvanayagam et al. (1996 ▶); Jonathan et al. (1988 ▶). For the crystal structures of related xanthene derivatives, see: Odabaşoğlu et al. (2008 ▶); Mehdi et al. (2011 ▶); Ravikumar et al. (2012 ▶). For the assignment of ring conformations, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C25H32O5 M = 412.51 Monoclinic, a = 9.774 (5) Å b = 10.698 (5) Å c = 21.578 (5) Å β = 93.735 (5)° V = 2251.5 (16) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004) ▶ T min = 0.961, T max = 0.989 17055 measured reflections 3962 independent reflections 3065 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.122 S = 1.03 3962 reflections 272 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812033934/wn2485sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812033934/wn2485Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H32O5F(000) = 888
Mr = 412.51Dx = 1.217 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 9.774 (5) ÅCell parameters from 6149 reflections
b = 10.698 (5) Åθ = 2.1–27.1°
c = 21.578 (5) ŵ = 0.08 mm1
β = 93.735 (5)°T = 293 K
V = 2251.5 (16) Å3Block, colourless
Z = 40.30 × 0.20 × 0.20 mm
Bruker Kappa APEXII CCD diffractometer3962 independent reflections
Radiation source: fine-focus sealed tube3065 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.028
ω and φ scanθmax = 25.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −11→7
Tmin = 0.961, Tmax = 0.989k = −12→12
17055 measured reflectionsl = −24→25
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H-atom parameters constrained
wR(F2) = 0.122w = 1/[σ2(Fo2) + (0.0573P)2 + 0.7618P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3962 reflectionsΔρmax = 0.24 e Å3
272 parametersΔρmin = −0.23 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0143 (14)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.1136 (3)0.5154 (3)0.33826 (11)0.0776 (7)
H1A0.15500.52260.29930.116*
H1B0.08360.59640.35100.116*
H1C0.03630.46000.33370.116*
C20.2151 (2)0.4651 (3)0.38572 (10)0.0707 (7)
H2A0.24570.38310.37320.085*
H2B0.29430.51980.39000.085*
C30.22806 (19)0.40529 (19)0.49280 (8)0.0495 (5)
C40.3642 (2)0.3757 (2)0.49343 (9)0.0567 (6)
H40.41290.39110.45860.068*
C50.42951 (19)0.32300 (19)0.54571 (9)0.0518 (5)
H50.52210.30320.54520.062*
C60.36275 (17)0.29861 (16)0.59866 (7)0.0368 (4)
C70.22621 (18)0.33226 (18)0.59738 (8)0.0474 (5)
H70.17810.31910.63260.057*
C80.15904 (19)0.3846 (2)0.54565 (9)0.0547 (5)
H80.06690.40610.54630.066*
C90.44542 (16)0.24953 (15)0.65658 (7)0.0350 (4)
H90.49800.32240.67200.042*
C100.55496 (16)0.15470 (16)0.64172 (7)0.0359 (4)
C110.52716 (17)0.05495 (16)0.60035 (7)0.0373 (4)
C120.63981 (18)−0.02547 (18)0.57850 (8)0.0474 (5)
H12A0.6192−0.04510.53500.057*
H12B0.6408−0.10350.60140.057*
C130.78274 (18)0.0323 (2)0.58573 (8)0.0497 (5)
C140.80122 (19)0.0814 (2)0.65212 (9)0.0564 (5)
H14A0.81010.01080.68030.068*
H14B0.88580.12880.65660.068*
C150.68583 (18)0.16245 (18)0.67054 (8)0.0433 (4)
C160.7976 (2)0.1388 (2)0.53921 (10)0.0651 (6)
H16A0.88830.17330.54460.098*
H16B0.73140.20270.54620.098*
H16C0.78250.10710.49770.098*
C170.8898 (2)−0.0678 (2)0.57416 (11)0.0714 (7)
H17A0.8820−0.13490.60330.107*
H17B0.9798−0.03190.57930.107*
H17C0.8746−0.09940.53260.107*
C180.36132 (16)0.21294 (15)0.71075 (7)0.0341 (4)
C190.25324 (17)0.12859 (16)0.70621 (8)0.0373 (4)
C200.1721 (2)0.09839 (17)0.76079 (9)0.0472 (5)
H20A0.21150.02510.78150.057*
H20B0.07900.07770.74590.057*
C210.16771 (18)0.20449 (17)0.80774 (8)0.0434 (4)
C220.31497 (19)0.24452 (19)0.82458 (8)0.0457 (5)
H22A0.31350.32330.84680.055*
H22B0.35760.18290.85260.055*
C230.40218 (18)0.25987 (16)0.77023 (8)0.0394 (4)
C240.08261 (19)0.31254 (19)0.78021 (9)0.0516 (5)
H24A0.08110.37910.81000.077*
H24B−0.00930.28450.76980.077*
H24C0.12240.34220.74340.077*
C250.1019 (2)0.1593 (2)0.86609 (10)0.0667 (6)
H25A0.10000.22660.89540.100*
H25B0.15430.09120.88420.100*
H25C0.00990.13180.85520.100*
O10.15317 (15)0.45642 (16)0.44304 (6)0.0703 (5)
O20.40539 (12)0.02575 (12)0.58061 (5)0.0467 (3)
O30.71819 (13)0.23817 (14)0.71624 (6)0.0597 (4)
H3A0.64810.26630.72990.072*
O40.21555 (12)0.06855 (12)0.65595 (6)0.0477 (3)
H4A0.27930.06630.63310.057*
O50.51622 (13)0.31629 (13)0.78119 (6)0.0527 (4)
U11U22U33U12U13U23
C10.0780 (16)0.0951 (18)0.0589 (14)−0.0061 (14)−0.0029 (12)0.0242 (13)
C20.0646 (14)0.0954 (18)0.0529 (13)0.0138 (12)0.0107 (11)0.0272 (13)
C30.0478 (11)0.0603 (12)0.0411 (10)0.0145 (9)0.0076 (8)0.0138 (9)
C40.0508 (12)0.0773 (14)0.0440 (11)0.0176 (10)0.0187 (9)0.0229 (10)
C50.0379 (10)0.0693 (13)0.0497 (11)0.0141 (9)0.0138 (8)0.0178 (10)
C60.0370 (9)0.0376 (9)0.0365 (9)0.0018 (7)0.0066 (7)0.0024 (7)
C70.0406 (10)0.0626 (12)0.0405 (10)0.0109 (9)0.0132 (8)0.0102 (9)
C80.0390 (10)0.0751 (14)0.0510 (11)0.0181 (9)0.0117 (8)0.0158 (10)
C90.0330 (8)0.0373 (9)0.0349 (9)−0.0032 (7)0.0035 (7)−0.0011 (7)
C100.0345 (9)0.0440 (10)0.0294 (8)0.0006 (7)0.0034 (7)0.0028 (7)
C110.0385 (9)0.0458 (10)0.0278 (8)0.0013 (7)0.0036 (7)0.0048 (7)
C120.0498 (11)0.0536 (11)0.0393 (10)0.0099 (9)0.0070 (8)−0.0028 (9)
C130.0400 (10)0.0690 (13)0.0404 (10)0.0151 (9)0.0056 (8)0.0012 (9)
C140.0379 (10)0.0842 (15)0.0464 (11)0.0132 (10)−0.0034 (8)−0.0067 (11)
C150.0369 (9)0.0597 (11)0.0334 (9)−0.0015 (8)0.0019 (7)−0.0024 (9)
C160.0528 (13)0.0821 (16)0.0623 (13)0.0027 (11)0.0171 (10)0.0066 (12)
C170.0564 (13)0.0975 (18)0.0607 (13)0.0304 (12)0.0077 (10)−0.0055 (13)
C180.0346 (9)0.0354 (9)0.0325 (9)0.0014 (7)0.0043 (7)−0.0005 (7)
C190.0379 (9)0.0359 (9)0.0384 (9)0.0019 (7)0.0056 (7)−0.0020 (8)
C200.0492 (11)0.0432 (10)0.0509 (11)−0.0054 (8)0.0168 (8)0.0013 (9)
C210.0460 (10)0.0459 (10)0.0397 (10)0.0004 (8)0.0142 (8)0.0002 (8)
C220.0494 (11)0.0536 (11)0.0347 (10)0.0085 (9)0.0067 (8)−0.0011 (8)
C230.0386 (9)0.0394 (9)0.0405 (10)0.0030 (8)0.0048 (7)−0.0019 (8)
C240.0437 (11)0.0551 (12)0.0569 (12)0.0061 (9)0.0096 (9)−0.0031 (10)
C250.0746 (15)0.0732 (15)0.0559 (13)−0.0010 (12)0.0305 (11)0.0050 (11)
O10.0564 (9)0.1055 (13)0.0500 (8)0.0307 (8)0.0115 (7)0.0312 (8)
O20.0411 (7)0.0590 (8)0.0398 (7)−0.0045 (6)0.0008 (5)−0.0075 (6)
O30.0373 (7)0.0860 (10)0.0556 (8)−0.0051 (7)0.0016 (6)−0.0234 (8)
O40.0441 (7)0.0527 (8)0.0472 (7)−0.0104 (6)0.0099 (6)−0.0117 (6)
O50.0459 (8)0.0660 (9)0.0460 (7)−0.0096 (6)0.0029 (6)−0.0164 (7)
C1—C21.481 (3)C14—C151.497 (3)
C1—H1A0.9600C14—H14A0.9700
C1—H1B0.9600C14—H14B0.9700
C1—H1C0.9600C15—O31.299 (2)
C2—O11.415 (2)C16—H16A0.9600
C2—H2A0.9700C16—H16B0.9600
C2—H2B0.9700C16—H16C0.9600
C3—C41.367 (3)C17—H17A0.9600
C3—O11.373 (2)C17—H17B0.9600
C3—C81.380 (3)C17—H17C0.9600
C4—C51.380 (3)C18—C191.388 (2)
C4—H40.9300C18—C231.411 (2)
C5—C61.377 (2)C19—O41.293 (2)
C5—H50.9300C19—C201.497 (2)
C6—C71.381 (2)C20—C211.524 (3)
C6—C91.536 (2)C20—H20A0.9700
C7—C81.377 (3)C20—H20B0.9700
C7—H70.9300C21—C241.522 (3)
C8—H80.9300C21—C221.523 (3)
C9—C181.523 (2)C21—C251.529 (3)
C9—C101.524 (2)C22—C231.503 (2)
C9—H90.9800C22—H22A0.9700
C10—C151.388 (2)C22—H22B0.9700
C10—C111.406 (2)C23—O51.276 (2)
C11—O21.276 (2)C24—H24A0.9600
C11—C121.497 (2)C24—H24B0.9600
C12—C131.526 (3)C24—H24C0.9600
C12—H12A0.9700C25—H25A0.9600
C12—H12B0.9700C25—H25B0.9600
C13—C141.525 (3)C25—H25C0.9600
C13—C171.529 (3)O3—H3A0.8200
C13—C161.531 (3)O4—H4A0.8200
C2—C1—H1A109.5H14A—C14—H14B107.7
C2—C1—H1B109.5O3—C15—C10123.30 (17)
H1A—C1—H1B109.5O3—C15—C14114.36 (15)
C2—C1—H1C109.5C10—C15—C14122.33 (16)
H1A—C1—H1C109.5C13—C16—H16A109.5
H1B—C1—H1C109.5C13—C16—H16B109.5
O1—C2—C1108.82 (19)H16A—C16—H16B109.5
O1—C2—H2A109.9C13—C16—H16C109.5
C1—C2—H2A109.9H16A—C16—H16C109.5
O1—C2—H2B109.9H16B—C16—H16C109.5
C1—C2—H2B109.9C13—C17—H17A109.5
H2A—C2—H2B108.3C13—C17—H17B109.5
C4—C3—O1124.68 (16)H17A—C17—H17B109.5
C4—C3—C8118.85 (17)C13—C17—H17C109.5
O1—C3—C8116.46 (16)H17A—C17—H17C109.5
C3—C4—C5120.04 (17)H17B—C17—H17C109.5
C3—C4—H4120.0C19—C18—C23117.68 (15)
C5—C4—H4120.0C19—C18—C9124.00 (15)
C6—C5—C4122.47 (17)C23—C18—C9118.13 (14)
C6—C5—H5118.8O4—C19—C18123.79 (15)
C4—C5—H5118.8O4—C19—C20114.57 (15)
C5—C6—C7116.33 (16)C18—C19—C20121.63 (15)
C5—C6—C9119.16 (15)C19—C20—C21113.67 (15)
C7—C6—C9124.19 (15)C19—C20—H20A108.8
C8—C7—C6122.12 (16)C21—C20—H20A108.8
C8—C7—H7118.9C19—C20—H20B108.8
C6—C7—H7118.9C21—C20—H20B108.8
C7—C8—C3120.15 (17)H20A—C20—H20B107.7
C7—C8—H8119.9C24—C21—C22111.33 (16)
C3—C8—H8119.9C24—C21—C20110.15 (16)
C18—C9—C10114.33 (14)C22—C21—C20107.52 (15)
C18—C9—C6115.51 (13)C24—C21—C25108.22 (16)
C10—C9—C6113.32 (13)C22—C21—C25109.52 (16)
C18—C9—H9103.9C20—C21—C25110.09 (16)
C10—C9—H9103.9C23—C22—C21114.81 (14)
C6—C9—H9103.9C23—C22—H22A108.6
C15—C10—C11117.65 (16)C21—C22—H22A108.6
C15—C10—C9120.37 (15)C23—C22—H22B108.6
C11—C10—C9121.95 (14)C21—C22—H22B108.6
O2—C11—C10122.34 (15)H22A—C22—H22B107.5
O2—C11—C12116.30 (16)O5—C23—C18121.93 (16)
C10—C11—C12121.34 (15)O5—C23—C22116.10 (15)
C11—C12—C13114.95 (16)C18—C23—C22121.96 (16)
C11—C12—H12A108.5C21—C24—H24A109.5
C13—C12—H12A108.5C21—C24—H24B109.5
C11—C12—H12B108.5H24A—C24—H24B109.5
C13—C12—H12B108.5C21—C24—H24C109.5
H12A—C12—H12B107.5H24A—C24—H24C109.5
C14—C13—C12106.67 (15)H24B—C24—H24C109.5
C14—C13—C17110.72 (16)C21—C25—H25A109.5
C12—C13—C17109.32 (18)C21—C25—H25B109.5
C14—C13—C16110.46 (19)H25A—C25—H25B109.5
C12—C13—C16111.08 (16)C21—C25—H25C109.5
C17—C13—C16108.59 (17)H25A—C25—H25C109.5
C15—C14—C13113.79 (15)H25B—C25—H25C109.5
C15—C14—H14A108.8C3—O1—C2118.21 (15)
C13—C14—H14A108.8C15—O3—H3A109.5
C15—C14—H14B108.8C19—O4—H4A109.5
C13—C14—H14B108.8
O1—C3—C4—C5−179.1 (2)C9—C10—C15—O38.8 (3)
C8—C3—C4—C51.7 (3)C11—C10—C15—C149.3 (3)
C3—C4—C5—C6−0.3 (3)C9—C10—C15—C14−172.57 (17)
C4—C5—C6—C7−1.3 (3)C13—C14—C15—O3−157.30 (18)
C4—C5—C6—C9−175.17 (19)C13—C14—C15—C1024.0 (3)
C5—C6—C7—C81.5 (3)C10—C9—C18—C19−79.6 (2)
C9—C6—C7—C8175.01 (18)C6—C9—C18—C1954.6 (2)
C6—C7—C8—C3−0.1 (3)C10—C9—C18—C2395.19 (18)
C4—C3—C8—C7−1.6 (3)C6—C9—C18—C23−130.60 (16)
O1—C3—C8—C7179.2 (2)C23—C18—C19—O4−172.22 (15)
C5—C6—C9—C18−174.17 (16)C9—C18—C19—O42.6 (3)
C7—C6—C9—C1812.5 (2)C23—C18—C19—C206.6 (2)
C5—C6—C9—C10−39.5 (2)C9—C18—C19—C20−178.58 (15)
C7—C6—C9—C10147.15 (18)O4—C19—C20—C21−152.94 (16)
C18—C9—C10—C15−89.34 (19)C18—C19—C20—C2128.2 (2)
C6—C9—C10—C15135.45 (16)C19—C20—C21—C2469.2 (2)
C18—C9—C10—C1188.71 (18)C19—C20—C21—C22−52.3 (2)
C6—C9—C10—C11−46.5 (2)C19—C20—C21—C25−171.51 (17)
C15—C10—C11—O2166.58 (16)C24—C21—C22—C23−75.1 (2)
C9—C10—C11—O2−11.5 (2)C20—C21—C22—C2345.6 (2)
C15—C10—C11—C12−11.6 (2)C25—C21—C22—C23165.22 (16)
C9—C10—C11—C12170.32 (15)C19—C18—C23—O5165.19 (16)
O2—C11—C12—C13162.12 (15)C9—C18—C23—O5−10.0 (2)
C10—C11—C12—C13−19.6 (2)C19—C18—C23—C22−13.8 (2)
C11—C12—C13—C1449.0 (2)C9—C18—C23—C22171.03 (15)
C11—C12—C13—C17168.76 (16)C21—C22—C23—O5166.69 (16)
C11—C12—C13—C16−71.4 (2)C21—C22—C23—C18−14.3 (2)
C12—C13—C14—C15−50.8 (2)C4—C3—O1—C28.4 (3)
C17—C13—C14—C15−169.63 (19)C8—C3—O1—C2−172.5 (2)
C16—C13—C14—C1570.0 (2)C1—C2—O1—C3176.6 (2)
C11—C10—C15—O3−169.30 (16)
D—H···AD—HH···AD···AD—H···A
O3—H3A···O50.821.832.631 (2)164
O4—H4A···O20.821.782.5864 (19)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3A⋯O50.821.832.631 (2)164
O4—H4A⋯O20.821.782.5864 (19)167
  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Ehretianone, a novel quinonoid xanthene from Ehretia buxifolia with antisnake venom activity.

Authors:  Z E Selvanayagam; S G Gnanavendhan; K Balakrishna; R B Rao; J Sivaraman; K Subramanian; R Puri; R K Puri
Journal:  J Nat Prod       Date:  1996-07       Impact factor: 4.050

3.  One-Pot Synthesis of New Symmetric and Asymmetric Xanthene Dyes.

Authors:  Scott A Hilderbrand; Ralph Weissleder
Journal:  Tetrahedron Lett       Date:  2007-06-18       Impact factor: 2.415

4.  9-(4-Methoxy-phen-yl)-3,3,6,6-tetra-methyl-3,4,6,7-tetra-hydro-2H-xanthene-1,8(5H,9H)-dione.

Authors:  Mustafa Odabaşoğlu; Muharrem Kaya; Yılmaz Yıldırır; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-07

5.  9-(3,4-Dimeth-oxy-phen-yl)-3,4,5,6,7,9-hexa-hydroxanthene-1,8(2H)-dione.

Authors:  Sayed Hasan Mehdi; Rokiah Hashim; Raza Murad Ghalib; Chin Sing Yeap; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-20

6.  3,3'-[(4-Nitro-phen-yl)methyl-ene]bis-(4-hy-droxy-2H-chromen-2-one).

Authors:  N Ravikumar; G Gopikrishna; K Anand Solomon
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-07
  6 in total
  1 in total

1.  2,2'-[(3-Bromo-4-hy-droxy-5-meth-oxy-phen-yl)methyl-idene]bis-(3-hy-droxy-5,5-dimethyl-cyclo-hex-2-en-1-one).

Authors:  V Sughanya; N Sureshbabu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-08
  1 in total

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