Literature DB >> 21754868

(1S,3S)-Methyl 6,7-dimeth-oxy-1-phenyl-1,2,3,4-tetra-hydro-isoquinoline-3-carboxyl-ate.

Tricia Naicker, Thavendran Govender, Hendrik G Kruger, Glenn E M Maguire.   

Abstract

In the title compound, C(19)H(21)NO(4), an organocatalyst with a tetra-hydro-isoquinoline backbone, the heterocyclic ring assumes a half-boat conformation. The dihedral angle between the aromatic rings is 82.93 (8)°. In the crystal, mol-ecules are linked via N-H⋯O and C-H⋯O hydrogen bonds, forming a layer parallel to (10[Formula: see text]).

Entities:  

Year:  2011        PMID: 21754868      PMCID: PMC3120575          DOI: 10.1107/S1600536811018782

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Naicker et al. (2010 ▶, 2011 ▶).

Experimental

Crystal data

C19H21NO4 M = 327.37 Monoclinic, a = 9.3841 (3) Å b = 6.3453 (2) Å c = 14.2048 (4) Å β = 94.475 (2)° V = 843.25 (4) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 173 K 0.90 × 0.07 × 0.06 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.923, T max = 0.995 4184 measured reflections 2275 independent reflections 2138 reflections with I > 2σ(I) R int = 0.010

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.082 S = 1.05 2275 reflections 222 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.13 e Å−3 Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: DENZO-SMN (Otwinowski & Minor, 1997 ▶); data reduction: DENZO-SMN; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009) ▶; software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811018782/is2714sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811018782/is2714Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H21NO4F(000) = 348
Mr = 327.37Dx = 1.289 Mg m3
Monoclinic, P21Melting point: 371 K
Hall symbol: P 2ybMo Kα radiation, λ = 0.71073 Å
a = 9.3841 (3) ÅCell parameters from 4184 reflections
b = 6.3453 (2) Åθ = 2.2–28.3°
c = 14.2048 (4) ŵ = 0.09 mm1
β = 94.475 (2)°T = 173 K
V = 843.25 (4) Å3Needle, colourless
Z = 20.90 × 0.07 × 0.06 mm
Nonius KappaCCD diffractometer2275 independent reflections
Radiation source: fine-focus sealed tube2138 reflections with I > 2σ(I)
graphiteRint = 0.010
φ and ω scansθmax = 28.3°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −12→12
Tmin = 0.923, Tmax = 0.995k = −8→8
4184 measured reflectionsl = −18→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.030H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.082w = 1/[σ2(Fo2) + (0.0478P)2 + 0.1004P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
2275 reflectionsΔρmax = 0.20 e Å3
222 parametersΔρmin = −0.13 e Å3
2 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.014 (4)
Experimental. Half sphere of data collected using COLLECT strategy (Nonius, 2000). Crystal to detector distance = 33 mm; combination of φ and ω scans of 1.0°, 60 s per °, 2 iterations.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.32761 (13)0.8193 (2)0.52227 (9)0.0421 (3)
O20.14691 (13)0.5304 (2)0.46573 (8)0.0377 (3)
O30.39059 (11)−0.1210 (2)0.96117 (8)0.0372 (3)
O40.15273 (11)−0.0802 (2)0.93763 (8)0.0359 (3)
N10.44475 (13)0.2219 (2)0.85516 (9)0.0286 (3)
H1N0.4969 (18)0.214 (4)0.9118 (11)0.033 (5)*
C10.45806 (15)0.4396 (3)0.82212 (10)0.0276 (3)
H10.42710.53820.87150.033*
C20.36095 (14)0.4684 (2)0.73185 (10)0.0260 (3)
C30.38575 (16)0.6398 (3)0.67243 (11)0.0303 (3)
H30.45580.74200.69210.036*
C40.30923 (16)0.6610 (3)0.58571 (11)0.0309 (3)
C50.20784 (15)0.5077 (3)0.55602 (10)0.0299 (3)
C60.17693 (14)0.3466 (3)0.61690 (10)0.0273 (3)
H60.10360.24850.59840.033*
C70.25316 (14)0.3266 (2)0.70613 (10)0.0250 (3)
C80.21706 (15)0.1462 (3)0.76978 (10)0.0274 (3)
H8A0.24460.01100.74150.033*
H8B0.11270.14330.77590.033*
C90.29613 (15)0.1715 (3)0.86760 (10)0.0259 (3)
H90.25240.29090.90110.031*
C100.28876 (15)−0.0258 (3)0.92677 (10)0.0273 (3)
C110.1344 (2)−0.2585 (3)0.99879 (13)0.0423 (4)
H11A0.0322−0.28591.00250.063*
H11B0.1788−0.22771.06210.063*
H11C0.1799−0.38290.97330.063*
C120.61296 (15)0.4843 (3)0.80537 (10)0.0291 (3)
C130.68782 (16)0.3487 (3)0.74980 (11)0.0374 (4)
H130.64190.22700.72290.045*
C140.82974 (17)0.3906 (4)0.73342 (12)0.0426 (4)
H140.87980.29800.69510.051*
C150.89763 (17)0.5663 (4)0.77280 (13)0.0431 (4)
H150.99510.59240.76310.052*
C160.82347 (18)0.7041 (3)0.82631 (13)0.0419 (4)
H160.86950.82690.85200.050*
C170.68109 (16)0.6639 (3)0.84278 (11)0.0339 (3)
H170.63070.75940.87960.041*
C180.43336 (19)0.9743 (3)0.54802 (15)0.0450 (4)
H18A0.43621.07820.49720.067*
H18B0.52700.90620.55850.067*
H18C0.40971.04500.60610.067*
C190.0553 (2)0.3649 (3)0.43094 (12)0.0480 (5)
H19A0.01730.39810.36640.072*
H19B−0.02380.34980.47150.072*
H19C0.10940.23280.43080.072*
U11U22U33U12U13U23
O10.0381 (6)0.0362 (7)0.0523 (7)−0.0028 (6)0.0043 (5)0.0163 (6)
O20.0426 (6)0.0405 (7)0.0296 (5)−0.0005 (6)−0.0009 (4)0.0067 (5)
O30.0353 (6)0.0404 (7)0.0356 (6)0.0093 (6)0.0002 (4)0.0060 (5)
O40.0313 (5)0.0380 (7)0.0380 (6)−0.0025 (5)−0.0002 (4)0.0088 (5)
N10.0229 (6)0.0322 (7)0.0299 (6)0.0000 (5)−0.0032 (5)0.0002 (6)
C10.0234 (6)0.0302 (8)0.0290 (7)−0.0003 (6)0.0007 (5)−0.0056 (6)
C20.0214 (6)0.0254 (7)0.0315 (7)0.0018 (6)0.0031 (5)−0.0026 (6)
C30.0237 (6)0.0251 (7)0.0422 (8)0.0006 (6)0.0023 (5)−0.0008 (7)
C40.0263 (6)0.0281 (8)0.0390 (8)0.0036 (6)0.0077 (6)0.0067 (7)
C50.0266 (7)0.0337 (8)0.0296 (7)0.0040 (6)0.0030 (5)0.0018 (6)
C60.0237 (6)0.0286 (7)0.0296 (7)0.0000 (6)0.0012 (5)−0.0001 (6)
C70.0218 (6)0.0257 (7)0.0276 (6)0.0017 (6)0.0027 (5)−0.0004 (6)
C80.0243 (6)0.0284 (7)0.0289 (7)−0.0023 (6)−0.0012 (5)0.0021 (6)
C90.0240 (6)0.0271 (7)0.0267 (6)0.0021 (6)0.0017 (5)−0.0016 (6)
C100.0302 (7)0.0291 (8)0.0223 (6)0.0015 (6)0.0008 (5)−0.0040 (6)
C110.0477 (9)0.0388 (10)0.0404 (9)−0.0081 (8)0.0035 (7)0.0082 (8)
C120.0232 (6)0.0350 (8)0.0284 (7)−0.0005 (6)−0.0017 (5)−0.0012 (6)
C130.0290 (7)0.0449 (10)0.0381 (8)0.0022 (8)0.0010 (6)−0.0077 (8)
C140.0299 (7)0.0590 (12)0.0394 (8)0.0068 (8)0.0068 (6)−0.0014 (9)
C150.0247 (7)0.0602 (12)0.0445 (9)−0.0010 (8)0.0029 (6)0.0106 (9)
C160.0314 (8)0.0473 (11)0.0460 (9)−0.0093 (8)−0.0031 (7)0.0041 (9)
C170.0286 (7)0.0370 (9)0.0357 (8)−0.0045 (7)0.0002 (6)−0.0014 (7)
C180.0414 (9)0.0287 (9)0.0673 (12)−0.0008 (8)0.0203 (8)0.0072 (9)
C190.0671 (12)0.0411 (11)0.0331 (8)0.0001 (10)−0.0126 (8)0.0006 (8)
O1—C41.3696 (19)C8—H8B0.9900
O1—C181.424 (2)C9—C101.512 (2)
O2—C51.3704 (18)C9—H91.0000
O2—C191.421 (2)C11—H11A0.9800
O3—C101.2017 (18)C11—H11B0.9800
O4—C101.3429 (18)C11—H11C0.9800
O4—C111.445 (2)C12—C171.392 (2)
N1—C91.4552 (18)C12—C131.394 (2)
N1—C11.467 (2)C13—C141.395 (2)
N1—H1N0.909 (14)C13—H130.9500
C1—C121.5178 (19)C14—C151.380 (3)
C1—C21.525 (2)C14—H140.9500
C1—H11.0000C15—C161.382 (3)
C2—C71.381 (2)C15—H150.9500
C2—C31.407 (2)C16—C171.398 (2)
C3—C41.383 (2)C16—H160.9500
C3—H30.9500C17—H170.9500
C4—C51.403 (2)C18—H18A0.9800
C5—C61.384 (2)C18—H18B0.9800
C6—C71.4118 (18)C18—H18C0.9800
C6—H60.9500C19—H19A0.9800
C7—C81.513 (2)C19—H19B0.9800
C8—C91.5317 (19)C19—H19C0.9800
C8—H8A0.9900
C4—O1—C18117.28 (14)C8—C9—H9108.9
C5—O2—C19116.41 (13)O3—C10—O4123.84 (15)
C10—O4—C11115.40 (13)O3—C10—C9124.95 (14)
C9—N1—C1110.63 (12)O4—C10—C9111.20 (12)
C9—N1—H1N109.5 (12)O4—C11—H11A109.5
C1—N1—H1N106.5 (15)O4—C11—H11B109.5
N1—C1—C12109.42 (13)H11A—C11—H11B109.5
N1—C1—C2108.75 (12)O4—C11—H11C109.5
C12—C1—C2111.26 (12)H11A—C11—H11C109.5
N1—C1—H1109.1H11B—C11—H11C109.5
C12—C1—H1109.1C17—C12—C13119.00 (14)
C2—C1—H1109.1C17—C12—C1120.67 (14)
C7—C2—C3119.79 (13)C13—C12—C1120.31 (14)
C7—C2—C1121.43 (13)C12—C13—C14120.43 (18)
C3—C2—C1118.75 (13)C12—C13—H13119.8
C4—C3—C2120.72 (14)C14—C13—H13119.8
C4—C3—H3119.6C15—C14—C13120.18 (18)
C2—C3—H3119.6C15—C14—H14119.9
O1—C4—C3125.04 (15)C13—C14—H14119.9
O1—C4—C5115.36 (14)C14—C15—C16119.84 (16)
C3—C4—C5119.55 (14)C14—C15—H15120.1
O2—C5—C6124.75 (14)C16—C15—H15120.1
O2—C5—C4115.61 (14)C15—C16—C17120.37 (18)
C6—C5—C4119.64 (13)C15—C16—H16119.8
C5—C6—C7120.76 (14)C17—C16—H16119.8
C5—C6—H6119.6C12—C17—C16120.14 (16)
C7—C6—H6119.6C12—C17—H17119.9
C2—C7—C6119.20 (13)C16—C17—H17119.9
C2—C7—C8121.88 (12)O1—C18—H18A109.5
C6—C7—C8118.89 (13)O1—C18—H18B109.5
C7—C8—C9110.34 (12)H18A—C18—H18B109.5
C7—C8—H8A109.6O1—C18—H18C109.5
C9—C8—H8A109.6H18A—C18—H18C109.5
C7—C8—H8B109.6H18B—C18—H18C109.5
C9—C8—H8B109.6O2—C19—H19A109.5
H8A—C8—H8B108.1O2—C19—H19B109.5
N1—C9—C10109.60 (12)H19A—C19—H19B109.5
N1—C9—C8108.29 (11)O2—C19—H19C109.5
C10—C9—C8112.19 (12)H19A—C19—H19C109.5
N1—C9—H9108.9H19B—C19—H19C109.5
C10—C9—H9108.9
C9—N1—C1—C12−177.34 (12)C5—C6—C7—C8−179.14 (14)
C9—N1—C1—C2−55.63 (14)C2—C7—C8—C99.86 (19)
N1—C1—C2—C716.42 (18)C6—C7—C8—C9−171.91 (13)
C12—C1—C2—C7137.00 (14)C1—N1—C9—C10−163.99 (11)
N1—C1—C2—C3−161.44 (13)C1—N1—C9—C873.33 (15)
C12—C1—C2—C3−40.86 (19)C7—C8—C9—N1−46.80 (16)
C7—C2—C3—C4−4.0 (2)C7—C8—C9—C10−167.89 (11)
C1—C2—C3—C4173.89 (14)C11—O4—C10—O33.2 (2)
C18—O1—C4—C3−0.3 (2)C11—O4—C10—C9−175.80 (13)
C18—O1—C4—C5−177.71 (14)N1—C9—C10—O32.7 (2)
C2—C3—C4—O1−178.59 (14)C8—C9—C10—O3123.00 (16)
C2—C3—C4—C5−1.2 (2)N1—C9—C10—O4−178.38 (12)
C19—O2—C5—C6−5.8 (2)C8—C9—C10—O4−58.05 (15)
C19—O2—C5—C4173.61 (15)N1—C1—C12—C17−130.54 (15)
O1—C4—C5—O23.6 (2)C2—C1—C12—C17109.27 (16)
C3—C4—C5—O2−174.04 (14)N1—C1—C12—C1351.37 (18)
O1—C4—C5—C6−177.03 (13)C2—C1—C12—C13−68.82 (19)
C3—C4—C5—C65.4 (2)C17—C12—C13—C141.2 (3)
O2—C5—C6—C7175.00 (14)C1—C12—C13—C14179.29 (16)
C4—C5—C6—C7−4.4 (2)C12—C13—C14—C150.5 (3)
C3—C2—C7—C65.0 (2)C13—C14—C15—C16−1.9 (3)
C1—C2—C7—C6−172.82 (13)C14—C15—C16—C171.6 (3)
C3—C2—C7—C8−176.77 (13)C13—C12—C17—C16−1.4 (2)
C1—C2—C7—C85.4 (2)C1—C12—C17—C16−179.55 (15)
C5—C6—C7—C2−0.9 (2)C15—C16—C17—C120.1 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O3i0.91 (2)2.27 (1)3.0918 (17)149 (2)
C1—H1···O3ii1.002.553.503 (2)160
C19—H19B···O2iii0.982.533.270 (2)132
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O3i0.91 (2)2.27 (1)3.0918 (17)149 (2)
C1—H1⋯O3ii1.002.553.503 (2)160
C19—H19B⋯O2iii0.982.533.270 (2)132

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (1S,3S)-Methyl 2-benzyl-6,7-dimeth-oxy-1-phenyl-1,2,3,4-tetra-hydro-isoquinoline-3-carboxyl-ate.

Authors:  Tricia Naicker; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-14
  2 in total

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