Literature DB >> 22590198

Creatininium 2-chloro-acetate.

A Jahubar Ali, S Athimoolam, S Asath Bahadur.   

Abstract

IN THE TITLE COMPOUND (SYSTEMATIC NAME: 2-amino-1-methyl-4-oxo-4,5-dihydro-1H-imidazol-3-ium 2-chloro-acetate), C(4)H(8)N(3)O(+)·C(2)H(2)ClO(2) (-), the mol-ecular aggregations are stabil-ized through classical (N-H⋯O) and non-classical (C-H⋯O and C-H⋯N) hydrogen-bonding inter-actions. The cations are linked to the anions, forming ion pairs through two N-H⋯O bonds that produce characteristic R(2) (2)(8) ring motifs. These cation-anion pairs are connected through another N-H⋯O hydrogen bond, leading to an R(4) (2)(8) ring motif. Further weak C-H⋯N inter-actions link the mol-ecules along the a axis, while other C-H⋯O inter-actions generate zigzag chains extending along b.

Entities:  

Year:  2012        PMID: 22590198      PMCID: PMC3344436          DOI: 10.1107/S1600536812012068

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Ali et al. (2011a ▶,b ▶); Bahadur, Kannan et al. (2007 ▶); Bahadur, Sivapragasam et al. (2007 ▶); Bahadur, Rajalakshmi et al. (2007 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the biological importance of creatinine, see: Madaras & Buck (1996 ▶); Sharma et al. (2004 ▶); Narayanan & Appleton (1980 ▶).

Experimental

Crystal data

C4H8N3O+·C2H2ClO2 M = 207.62 Monoclinic, a = 5.7993 (8) Å b = 13.934 (2) Å c = 11.2205 (16) Å β = 95.326 (2)° V = 902.8 (2) Å3 Z = 4 Mo Kα radiation μ = 0.40 mm−1 T = 294 K 0.24 × 0.22 × 0.19 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer 8205 measured reflections 1587 independent reflections 1472 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.117 S = 1.05 1587 reflections 131 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.27 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL/PC (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL/PC; molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL/PC. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812012068/sj5215sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812012068/sj5215Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812012068/sj5215Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H8N3O+·C2H2ClO2F(000) = 432
Mr = 207.62Dx = 1.527 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2516 reflections
a = 5.7993 (8) Åθ = 2.2–23.4°
b = 13.934 (2) ŵ = 0.40 mm1
c = 11.2205 (16) ÅT = 294 K
β = 95.326 (2)°Block, colourless
V = 902.8 (2) Å30.24 × 0.22 × 0.19 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer1472 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.031
Graphite monochromatorθmax = 25.0°, θmin = 2.3°
ω scansh = −6→6
8205 measured reflectionsk = −16→16
1587 independent reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0666P)2 + 0.3396P] where P = (Fo2 + 2Fc2)/3
1587 reflections(Δ/σ)max < 0.001
131 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N111.0950 (2)0.16015 (11)0.55491 (13)0.0435 (4)
C111.1347 (4)0.13325 (16)0.67962 (17)0.0517 (5)
H11A1.04910.17530.72700.078*
H11B1.29690.13830.70520.078*
H11C1.08450.06830.68950.078*
C121.2339 (3)0.22831 (14)0.49571 (17)0.0474 (5)
H12A1.39260.20640.49570.057*
H12B1.23280.29080.53360.057*
C131.1149 (3)0.23140 (13)0.37071 (18)0.0471 (5)
O131.1682 (3)0.27677 (12)0.28629 (14)0.0668 (5)
N140.9267 (3)0.17187 (11)0.37131 (14)0.0434 (4)
C150.9179 (3)0.13198 (12)0.48112 (15)0.0390 (4)
N150.7527 (3)0.07372 (13)0.50395 (16)0.0482 (4)
H1N0.741 (4)0.0498 (17)0.569 (2)0.063 (7)*
H2N0.636 (4)0.0637 (17)0.441 (2)0.062 (6)*
H14N0.835 (4)0.1546 (17)0.311 (2)0.062 (7)*
C210.4400 (3)0.07309 (13)0.22026 (16)0.0434 (4)
C220.2464 (4)0.04780 (17)0.12518 (18)0.0561 (5)
H22A0.09950.06140.15640.067*
H22B0.2520−0.02060.10990.067*
O210.6111 (2)0.11830 (11)0.19341 (13)0.0578 (4)
O220.4072 (2)0.04254 (11)0.32210 (12)0.0547 (4)
Cl10.25524 (10)0.10901 (5)−0.01176 (5)0.0725 (3)
U11U22U33U12U13U23
N110.0406 (8)0.0488 (8)0.0392 (8)−0.0010 (6)−0.0055 (6)−0.0015 (6)
C110.0518 (11)0.0622 (12)0.0390 (10)0.0059 (9)−0.0074 (8)−0.0025 (9)
C120.0363 (9)0.0517 (11)0.0536 (11)−0.0030 (7)0.0016 (8)−0.0055 (8)
C130.0405 (9)0.0501 (10)0.0510 (11)−0.0005 (8)0.0067 (8)0.0015 (8)
O130.0589 (9)0.0813 (11)0.0612 (10)−0.0129 (7)0.0108 (7)0.0176 (8)
N140.0409 (8)0.0507 (9)0.0373 (8)−0.0039 (6)−0.0028 (6)0.0016 (6)
C150.0382 (9)0.0401 (8)0.0379 (9)0.0037 (7)−0.0009 (7)−0.0010 (7)
N150.0462 (10)0.0556 (10)0.0414 (9)−0.0097 (7)−0.0043 (8)0.0082 (7)
C210.0448 (10)0.0456 (9)0.0380 (9)−0.0027 (7)−0.0056 (8)0.0014 (7)
C220.0539 (11)0.0694 (13)0.0427 (10)−0.0161 (10)−0.0087 (9)0.0053 (9)
O210.0544 (8)0.0748 (10)0.0418 (8)−0.0223 (7)−0.0081 (6)0.0098 (6)
O220.0545 (8)0.0661 (9)0.0413 (8)−0.0140 (7)−0.0068 (6)0.0123 (6)
Cl10.0710 (4)0.0998 (5)0.0426 (3)−0.0207 (3)−0.0164 (3)0.0133 (3)
N11—C151.318 (2)N14—C151.357 (2)
N11—C121.446 (2)N14—H14N0.86 (3)
N11—C111.446 (2)C15—N151.299 (2)
C11—H11A0.9600N15—H1N0.81 (3)
C11—H11B0.9600N15—H2N0.94 (3)
C11—H11C0.9600C21—O211.236 (2)
C12—C131.505 (3)C21—O221.251 (2)
C12—H12A0.9700C21—C221.517 (2)
C12—H12B0.9700C22—Cl11.762 (2)
C13—O131.203 (2)C22—H22A0.9700
C13—N141.371 (2)C22—H22B0.9700
C15—N11—C12109.98 (15)C15—N14—C13110.45 (16)
C15—N11—C11125.12 (16)C15—N14—H14N122.0 (16)
C12—N11—C11124.71 (15)C13—N14—H14N127.1 (16)
N11—C11—H11A109.5N15—C15—N11127.46 (17)
N11—C11—H11B109.5N15—C15—N14121.71 (16)
H11A—C11—H11B109.5N11—C15—N14110.83 (16)
N11—C11—H11C109.5C15—N15—H1N124.1 (18)
H11A—C11—H11C109.5C15—N15—H2N116.0 (14)
H11B—C11—H11C109.5H1N—N15—H2N120 (2)
N11—C12—C13102.72 (14)O21—C21—O22126.16 (17)
N11—C12—H12A111.2O21—C21—C22120.37 (16)
C13—C12—H12A111.2O22—C21—C22113.46 (16)
N11—C12—H12B111.2C21—C22—Cl1114.92 (14)
C13—C12—H12B111.2C21—C22—H22A108.5
H12A—C12—H12B109.1Cl1—C22—H22A108.5
O13—C13—N14125.77 (19)C21—C22—H22B108.5
O13—C13—C12128.30 (18)Cl1—C22—H22B108.5
N14—C13—C12105.92 (16)H22A—C22—H22B107.5
C15—N11—C12—C13−3.13 (19)C11—N11—C15—N15−2.4 (3)
C11—N11—C12—C13−178.40 (16)C12—N11—C15—N142.9 (2)
N11—C12—C13—O13−178.5 (2)C11—N11—C15—N14178.17 (16)
N11—C12—C13—N142.23 (19)C13—N14—C15—N15179.15 (17)
O13—C13—N14—C15−179.97 (19)C13—N14—C15—N11−1.4 (2)
C12—C13—N14—C15−0.7 (2)O21—C21—C22—Cl1−13.4 (3)
C12—N11—C15—N15−177.63 (18)O22—C21—C22—Cl1167.75 (15)
D—H···AD—HH···AD···AD—H···A
N15—H1N···O22i0.81 (3)2.02 (3)2.762 (2)152 (2)
N15—H2N···O220.94 (3)1.82 (3)2.758 (2)179 (2)
N14—H14N···O210.86 (3)1.83 (3)2.686 (2)173 (2)
C11—H11A···O13ii0.962.463.305 (3)147
C11—H11B···O13iii0.962.553.448 (3)156
C12—H12A···N15iv0.972.783.695 (3)157
C12—H12B···O21iii0.972.363.208 (2)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N15—H1N⋯O22i0.81 (3)2.02 (3)2.762 (2)152 (2)
N15—H2N⋯O220.94 (3)1.82 (3)2.758 (2)179 (2)
N14—H14N⋯O210.86 (3)1.83 (3)2.686 (2)173 (2)
C11—H11A⋯O13ii0.962.463.305 (3)147
C11—H11B⋯O13iii0.962.553.448 (3)156
C12—H12A⋯N15iv0.972.783.695 (3)157
C12—H12B⋯O21iii0.972.363.208 (2)146

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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