Literature DB >> 21754736

5-Meth-oxy-1,2',3-trimethyl-4,6-dioxa-2-aza-spiro-[bicyclo-[3.2.0]hept-2-ene-7,4'-isoquinoline]-1',3'(2'H,4'H)-dione.

Hoong-Kun Fun, Ching Kheng Quah, Chengmei Huang, Haitao Yu.   

Abstract

In the isoquinoline ring system of the title mol-ecule, C(16)H(16)N(2)O(5), the N-heterocyclic ring is in a half-boat conformation. The dioxaaza-spiro ring is essentially planar [maximum deviation = 0.022 (1) Å] and forms a dihedral angle of 24.56 (4)° with the benzene ring.

Entities:  

Year:  2011        PMID: 21754736      PMCID: PMC3120469          DOI: 10.1107/S1600536811016266

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and the potential biological activity of the title compound, see: Du et al. (2008 ▶); Chen et al. (2006 ▶); Yu et al. (2010 ▶); Harris et al. (2005 ▶); Zhang et al. (2004 ▶); Wang et al. (2010 ▶); Huang et al. (2011 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶). For standard bond-length data, see: Allen et al. (1987 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For related structures, see: Fun et al. (2011a ▶,b ▶,c ▶).

Experimental

Crystal data

C16H16N2O5 M = 316.31 Monoclinic, a = 7.3643 (1) Å b = 29.8703 (6) Å c = 6.7802 (1) Å β = 105.294 (1)° V = 1438.65 (4) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.46 × 0.31 × 0.27 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.951, T max = 0.971 44501 measured reflections 8265 independent reflections 6842 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.126 S = 1.08 8265 reflections 212 parameters H-atom parameters constrained Δρmax = 0.50 e Å−3 Δρmin = −0.37 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811016266/lh5241sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811016266/lh5241Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811016266/lh5241Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H16N2O5F(000) = 664
Mr = 316.31Dx = 1.460 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9541 reflections
a = 7.3643 (1) Åθ = 2.7–38.9°
b = 29.8703 (6) ŵ = 0.11 mm1
c = 6.7802 (1) ÅT = 100 K
β = 105.294 (1)°Block, colourless
V = 1438.65 (4) Å30.46 × 0.31 × 0.27 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer8265 independent reflections
Radiation source: fine-focus sealed tube6842 reflections with I > 2σ(I)
graphiteRint = 0.033
φ and ω scansθmax = 39.1°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −13→11
Tmin = 0.951, Tmax = 0.971k = −52→52
44501 measured reflectionsl = −10→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.126H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0561P)2 + 0.4048P] where P = (Fo2 + 2Fc2)/3
8265 reflections(Δ/σ)max = 0.001
212 parametersΔρmax = 0.50 e Å3
0 restraintsΔρmin = −0.37 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.98692 (10)0.07763 (2)1.21672 (11)0.01961 (12)
O20.97185 (10)0.22835 (2)1.29761 (11)0.02036 (12)
O30.64272 (8)0.074342 (18)0.93351 (9)0.01245 (10)
O40.80974 (8)0.037356 (19)0.72911 (9)0.01405 (10)
O50.50850 (8)0.06418 (2)0.59672 (9)0.01442 (10)
N10.99366 (9)0.15373 (2)1.23860 (10)0.01288 (11)
N20.98329 (9)0.10159 (2)0.78175 (11)0.01329 (11)
C10.91387 (11)0.11323 (3)1.15734 (11)0.01266 (12)
C20.89437 (11)0.19420 (3)1.22005 (11)0.01288 (12)
C30.68983 (10)0.19200 (2)1.11676 (11)0.01123 (11)
C40.57505 (11)0.22751 (2)1.14283 (12)0.01418 (12)
H4A0.62790.25261.21710.017*
C50.38157 (12)0.22526 (3)1.05764 (13)0.01604 (13)
H5A0.30480.24891.07430.019*
C60.30314 (11)0.18742 (3)0.94723 (12)0.01532 (13)
H6A0.17390.18600.88930.018*
C70.41660 (11)0.15171 (3)0.92290 (11)0.01323 (12)
H7A0.36300.12640.85060.016*
C80.61080 (10)0.15391 (2)1.00719 (10)0.01055 (11)
C90.73909 (10)0.11699 (2)0.97884 (11)0.01041 (11)
C100.67607 (10)0.07134 (2)0.73762 (11)0.01101 (11)
C110.98054 (11)0.05895 (3)0.76219 (12)0.01374 (12)
C120.79021 (10)0.11558 (2)0.76495 (11)0.01075 (11)
C130.72971 (12)0.15463 (3)0.62183 (12)0.01482 (13)
H13A0.74950.14750.49090.022*
H13B0.80250.18060.67710.022*
H13C0.59860.16070.60630.022*
C141.18102 (12)0.15176 (3)1.38319 (13)0.01961 (15)
H14A1.25850.13111.33380.029*
H14B1.16950.14201.51430.029*
H14C1.23760.18091.39610.029*
C150.51787 (13)0.05535 (3)0.39061 (13)0.02037 (15)
H15A0.39270.05300.30240.031*
H15B0.58400.02780.38740.031*
H15C0.58310.07940.34470.031*
C161.14282 (12)0.02931 (3)0.76728 (17)0.02177 (17)
H16A1.25750.04620.81010.033*
H16B1.13140.01730.63330.033*
H16C1.14480.00530.86180.033*
U11U22U33U12U13U23
O10.0194 (3)0.0141 (2)0.0220 (3)0.0030 (2)−0.0004 (2)0.0036 (2)
O20.0186 (3)0.0147 (3)0.0249 (3)−0.0053 (2)0.0006 (2)−0.0044 (2)
O30.0150 (2)0.0102 (2)0.0132 (2)−0.00369 (17)0.00555 (17)−0.00184 (17)
O40.0112 (2)0.0101 (2)0.0215 (3)−0.00064 (17)0.00536 (18)−0.00282 (18)
O50.0113 (2)0.0169 (2)0.0144 (2)−0.00187 (18)0.00209 (17)−0.00453 (19)
N10.0106 (2)0.0138 (3)0.0126 (2)−0.00073 (19)0.00022 (18)−0.0006 (2)
N20.0113 (2)0.0118 (2)0.0179 (3)−0.00080 (19)0.0059 (2)−0.0016 (2)
C10.0126 (3)0.0126 (3)0.0121 (3)0.0000 (2)0.0022 (2)0.0005 (2)
C20.0132 (3)0.0125 (3)0.0123 (3)−0.0019 (2)0.0022 (2)−0.0002 (2)
C30.0124 (3)0.0104 (3)0.0106 (2)−0.0008 (2)0.0026 (2)0.0001 (2)
C40.0174 (3)0.0106 (3)0.0146 (3)0.0006 (2)0.0044 (2)−0.0004 (2)
C50.0169 (3)0.0143 (3)0.0176 (3)0.0039 (2)0.0058 (2)0.0005 (2)
C60.0117 (3)0.0175 (3)0.0164 (3)0.0022 (2)0.0031 (2)0.0001 (2)
C70.0113 (3)0.0146 (3)0.0133 (3)0.0000 (2)0.0022 (2)−0.0016 (2)
C80.0114 (3)0.0107 (3)0.0095 (2)−0.0003 (2)0.00277 (19)−0.0006 (2)
C90.0110 (3)0.0094 (2)0.0107 (2)−0.0013 (2)0.00248 (19)−0.0008 (2)
C100.0104 (3)0.0102 (3)0.0127 (3)−0.0006 (2)0.0035 (2)−0.0015 (2)
C110.0116 (3)0.0123 (3)0.0183 (3)−0.0008 (2)0.0056 (2)−0.0020 (2)
C120.0112 (3)0.0098 (3)0.0117 (3)−0.0006 (2)0.0040 (2)−0.0009 (2)
C130.0187 (3)0.0124 (3)0.0145 (3)0.0010 (2)0.0064 (2)0.0021 (2)
C140.0131 (3)0.0241 (4)0.0178 (3)−0.0014 (3)−0.0026 (2)0.0012 (3)
C150.0215 (4)0.0237 (4)0.0149 (3)−0.0007 (3)0.0030 (3)−0.0056 (3)
C160.0140 (3)0.0152 (3)0.0374 (5)0.0019 (3)0.0092 (3)−0.0041 (3)
O1—C11.2116 (10)C6—C71.3914 (11)
O2—C21.2183 (9)C6—H6A0.9300
O3—C101.4158 (9)C7—C81.3946 (10)
O3—C91.4512 (9)C7—H7A0.9300
O4—C111.3784 (9)C8—C91.4972 (10)
O4—C101.4257 (9)C9—C121.5921 (10)
O5—C101.3636 (9)C10—C121.5508 (10)
O5—C151.4416 (10)C11—C161.4804 (11)
N1—C11.3933 (10)C12—C131.5075 (10)
N1—C21.4012 (10)C13—H13A0.9600
N1—C141.4679 (10)C13—H13B0.9600
N2—C111.2799 (10)C13—H13C0.9600
N2—C121.4574 (10)C14—H14A0.9600
C1—C91.5206 (10)C14—H14B0.9600
C2—C31.4857 (10)C14—H14C0.9600
C3—C41.3961 (10)C15—H15A0.9600
C3—C81.3990 (10)C15—H15B0.9600
C4—C51.3907 (12)C15—H15C0.9600
C4—H4A0.9300C16—H16A0.9600
C5—C61.3941 (12)C16—H16B0.9600
C5—H5A0.9300C16—H16C0.9600
C10—O3—C993.33 (5)O5—C10—O4111.53 (6)
C11—O4—C10105.68 (6)O3—C10—O4112.06 (6)
C10—O5—C15116.23 (6)O5—C10—C12125.39 (6)
C1—N1—C2123.91 (6)O3—C10—C1293.25 (5)
C1—N1—C14116.97 (7)O4—C10—C12104.67 (6)
C2—N1—C14118.08 (7)N2—C11—O4118.12 (7)
C11—N2—C12106.79 (6)N2—C11—C16127.02 (7)
O1—C1—N1121.77 (7)O4—C11—C16114.85 (7)
O1—C1—C9122.53 (7)N2—C12—C13112.88 (6)
N1—C1—C9115.52 (6)N2—C12—C10104.58 (6)
O2—C2—N1120.65 (7)C13—C12—C10121.57 (6)
O2—C2—C3122.79 (7)N2—C12—C9113.37 (6)
N1—C2—C3116.38 (6)C13—C12—C9117.72 (6)
C4—C3—C8120.27 (7)C10—C12—C983.13 (5)
C4—C3—C2118.63 (7)C12—C13—H13A109.5
C8—C3—C2120.95 (6)C12—C13—H13B109.5
C5—C4—C3119.93 (7)H13A—C13—H13B109.5
C5—C4—H4A120.0C12—C13—H13C109.5
C3—C4—H4A120.0H13A—C13—H13C109.5
C4—C5—C6119.74 (7)H13B—C13—H13C109.5
C4—C5—H5A120.1N1—C14—H14A109.5
C6—C5—H5A120.1N1—C14—H14B109.5
C7—C6—C5120.57 (7)H14A—C14—H14B109.5
C7—C6—H6A119.7N1—C14—H14C109.5
C5—C6—H6A119.7H14A—C14—H14C109.5
C6—C7—C8119.88 (7)H14B—C14—H14C109.5
C6—C7—H7A120.1O5—C15—H15A109.5
C8—C7—H7A120.1O5—C15—H15B109.5
C7—C8—C3119.60 (7)H15A—C15—H15B109.5
C7—C8—C9121.75 (6)O5—C15—H15C109.5
C3—C8—C9118.62 (6)H15A—C15—H15C109.5
O3—C9—C8112.58 (6)H15B—C15—H15C109.5
O3—C9—C1111.58 (6)C11—C16—H16A109.5
C8—C9—C1112.49 (6)C11—C16—H16B109.5
O3—C9—C1290.22 (5)H16A—C16—H16B109.5
C8—C9—C12116.44 (6)C11—C16—H16C109.5
C1—C9—C12111.66 (6)H16A—C16—H16C109.5
O5—C10—O3108.56 (6)H16B—C16—H16C109.5
C2—N1—C1—O1−161.40 (8)O1—C1—C9—C12−81.94 (9)
C14—N1—C1—O16.68 (11)N1—C1—C9—C1293.26 (7)
C2—N1—C1—C923.35 (10)C15—O5—C10—O3−173.45 (6)
C14—N1—C1—C9−168.56 (7)C15—O5—C10—O4−49.51 (9)
C1—N1—C2—O2178.82 (8)C15—O5—C10—C1278.38 (9)
C14—N1—C2—O210.86 (11)C9—O3—C10—O5−126.97 (6)
C1—N1—C2—C33.52 (10)C9—O3—C10—O4109.41 (6)
C14—N1—C2—C3−164.44 (7)C9—O3—C10—C122.15 (6)
O2—C2—C3—C4−12.66 (11)C11—O4—C10—O5142.09 (6)
N1—C2—C3—C4162.54 (7)C11—O4—C10—O3−95.97 (7)
O2—C2—C3—C8171.75 (7)C11—O4—C10—C123.77 (7)
N1—C2—C3—C8−13.05 (10)C12—N2—C11—O40.91 (9)
C8—C3—C4—C5−0.74 (11)C12—N2—C11—C16179.69 (8)
C2—C3—C4—C5−176.36 (7)C10—O4—C11—N2−3.21 (9)
C3—C4—C5—C60.27 (12)C10—O4—C11—C16177.86 (7)
C4—C5—C6—C70.53 (12)C11—N2—C12—C13−132.59 (7)
C5—C6—C7—C8−0.85 (12)C11—N2—C12—C101.60 (8)
C6—C7—C8—C30.38 (11)C11—N2—C12—C990.33 (7)
C6—C7—C8—C9−177.87 (7)O5—C10—C12—N2−133.99 (7)
C4—C3—C8—C70.41 (10)O3—C10—C12—N2110.46 (6)
C2—C3—C8—C7175.93 (7)O4—C10—C12—N2−3.35 (7)
C4—C3—C8—C9178.71 (7)O5—C10—C12—C13−4.83 (10)
C2—C3—C8—C9−5.77 (10)O3—C10—C12—C13−120.39 (7)
C10—O3—C9—C8116.84 (6)O4—C10—C12—C13125.81 (7)
C10—O3—C9—C1−115.57 (6)O5—C10—C12—C9113.59 (7)
C10—O3—C9—C12−2.09 (5)O3—C10—C12—C9−1.97 (5)
C7—C8—C9—O3−23.21 (9)O4—C10—C12—C9−115.78 (6)
C3—C8—C9—O3158.52 (6)O3—C9—C12—N2−101.04 (6)
C7—C8—C9—C1−150.32 (7)C8—C9—C12—N2143.45 (6)
C3—C8—C9—C131.42 (9)C1—C9—C12—N212.37 (8)
C7—C8—C9—C1278.99 (8)O3—C9—C12—C13124.09 (7)
C3—C8—C9—C12−99.28 (7)C8—C9—C12—C138.58 (9)
O1—C1—C9—O317.35 (10)C1—C9—C12—C13−122.51 (7)
N1—C1—C9—O3−167.44 (6)O3—C9—C12—C101.92 (5)
O1—C1—C9—C8144.99 (8)C8—C9—C12—C10−113.59 (6)
N1—C1—C9—C8−39.81 (9)C1—C9—C12—C10115.32 (6)
  12 in total

1.  Design, synthesis, and biological evaluation of isoquinoline-1,3,4-trione derivatives as potent caspase-3 inhibitors.

Authors:  Yi-Hua Chen; Ya-Hui Zhang; Hua-Jie Zhang; Da-Zhi Liu; Min Gu; Jing-Ya Li; Fang Wu; Xing-Zu Zhu; Jia Li; Fa-Jun Nan
Journal:  J Med Chem       Date:  2006-03-09       Impact factor: 7.446

2.  Photoinduced [4 + 4] cycloadditions of o-quinones with oxazoles.

Authors:  Yan Zhang; Lei Wang; Min Zhang; Hoong-Kun Fun; Jian-Hua Xu
Journal:  Org Lett       Date:  2004-12-23       Impact factor: 6.005

3.  Facile synthesis of spiroisoquinolines based on photocycloaddition of isoquinoline-1,3,4-trione with oxazoles.

Authors:  Chengmei Huang; Haitao Yu; Zhengrui Miao; Jie Zhou; Shuai Wang; Hoong-Kun Fun; Jianhua Xu; Yan Zhang
Journal:  Org Biomol Chem       Date:  2011-04-06       Impact factor: 3.876

4.  Discovery and evaluation of 2-anilino-5-aryloxazoles as a novel class of VEGFR2 kinase inhibitors.

Authors:  Philip A Harris; Mui Cheung; Robert N Hunter; Matthew L Brown; James M Veal; Robert T Nolte; Liping Wang; Wendy Liu; Renae M Crosby; Jennifer H Johnson; Andrea H Epperly; Rakesh Kumar; Deirdre K Luttrell; Jeffrey A Stafford
Journal:  J Med Chem       Date:  2005-03-10       Impact factor: 7.446

5.  Isoquinoline-1,3,4-trione derivatives inactivate caspase-3 by generation of reactive oxygen species.

Authors:  Jun-Qing Du; Jian Wu; Hua-Jie Zhang; Ya-Hui Zhang; Bei-Ying Qiu; Fang Wu; Yi-Hua Chen; Jing-Ya Li; Fa-Jun Nan; Jian-Ping Ding; Jia Li
Journal:  J Biol Chem       Date:  2008-09-02       Impact factor: 5.157

6.  Photoinduced [4 + 4], [4 + 2], and [2 + 2] cycloadditions of o-quinones with oxazoles: chemo-, regio-, and diastereoselectivity.

Authors:  Lei Wang; Yu-Cheng Huang; Yang Liu; Hoong-Kun Fun; Yan Zhang; Jian-Hua Xu
Journal:  J Org Chem       Date:  2010-10-28       Impact factor: 4.354

7.  (1S*,4'S*,5R*)-1-Isobutyl-5-meth-oxy-2',3-dimethyl-4,6-dioxa-2-aza-spiro-[bicyclo-[3.2.0]hept-2-ene-7,4'-isoquinoline]-1',3'(2'H,4'H)-dione.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; Chengmei Huang; Haitao Yu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-29

8.  (1S*,4'S*,5R*)-1-Isopropyl-5-meth-oxy-2',3-dimethyl-4,6-dioxa-2-aza-spiro-[bicyclo-[3.2.0]hept-2-ene-7,4'-isoquinoline]-1',3'(2'H,4'H)-dione.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; Chengmei Huang; Haitao Yu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-29

9.  1-Benzyl-5-meth-oxy-2',3-dimethyl-4,6-dioxa-2-aza-spiro-[bicyclo-[3.2.0]hept-2-ene-7,4'-isoquinoline]-1',3'(2'H,4'H)-dione.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; Chengmei Huang; Haitao Yu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-07

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
View more
  4 in total

1.  Methyl 2-acetamido-2-(4-hy-droxy-2-methyl-1,3-dioxo-1,2,3,4-tetra-hydro-isoquinolin-4-yl)-4-methyl-penta-noate.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; Kai Xu; Yan Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-18

2.  Methyl 4'-isobutyl-2,2'-dimethyl-1,3-dioxo-2,3-dihydro-1H,4'H-spiro-[iso-quinoline-4,5'-oxazole]-4'-carboxyl-ate.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; Kai Xu; Yan Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-25

3.  Methyl 4'-benzyl-2,2'-dimethyl-1,3-dioxo-2,3-dihydro-1H,4'H-spiro-[iso-quinoline-4,5'-oxazole]-4'-carboxyl-ate.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; Chengmei Huang; Haitao Yu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-25

4.  Methyl 2,2'-dimethyl-4'-[2-(methyl-sulfan-yl)eth-yl]-1,3-dioxo-2,3-dihydro-1H,4'H-spiro-[isoquinoline-4,5'-oxazole]-4'-carboxyl-ate.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; Chengmei Huang; Haitao Yu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-02
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.