| Literature DB >> 21837104 |
Hoong-Kun Fun, Ching Kheng Quah, Kai Xu, Yan Zhang.
Abstract
In the isoquinoline ring system of the title mol-ecule, C(19)H(24)N(2)O(6), the N-heterocyclic ring is in a half-boat conformation. The mol-ecular structure is stabilized by an intra-molecular O-H⋯O hydrogen bond, which generates an S(7) ring motif. In the crystal, mol-ecules are linked via inter-molecular bifurcated N-H⋯(O,O) and weak C-H⋯O hydrogen bonds into a three-dimensional network.Entities:
Year: 2011 PMID: 21837104 PMCID: PMC3151770 DOI: 10.1107/S1600536811022999
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C19H24N2O6 | |
| Monoclinic, | Cu |
| Hall symbol: C -2yc | Cell parameters from 9888 reflections |
| θ = 5.1–64.2° | |
| µ = 0.85 mm−1 | |
| β = 100.404 (5)° | Needle, colourless |
| 0.50 × 0.15 × 0.15 mm | |
| Bruker APEX DUO CCD area-detector diffractometer | 2713 independent reflections |
| Radiation source: fine-focus sealed tube | 2673 reflections with |
| graphite | |
| φ and ω scans | θmax = 64.7°, θmin = 5.1° |
| Absorption correction: multi-scan ( | |
| 18268 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2713 reflections | Δρmax = 0.11 e Å−3 |
| 257 parameters | Δρmin = −0.14 e Å−3 |
| 2 restraints | Absolute structure: Flack (1983), 1204 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.05 (13) |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.81985 (6) | 0.74615 (13) | 1.04040 (10) | 0.0229 (3) | |
| O2 | 1.05834 (6) | 0.65801 (14) | 0.97375 (10) | 0.0302 (3) | |
| O3 | 0.76692 (6) | 0.48621 (12) | 0.94001 (10) | 0.0204 (2) | |
| O4 | 0.91523 (6) | 0.77211 (12) | 0.76247 (9) | 0.0193 (2) | |
| O5 | 0.89019 (6) | 0.56633 (12) | 0.65074 (9) | 0.0204 (2) | |
| O6 | 0.64674 (6) | 0.52211 (12) | 0.77471 (10) | 0.0223 (3) | |
| N1 | 0.93918 (7) | 0.70763 (15) | 1.00450 (11) | 0.0206 (3) | |
| N2 | 0.75643 (7) | 0.51865 (14) | 0.70247 (12) | 0.0171 (3) | |
| C1 | 0.86194 (9) | 0.67556 (17) | 0.99008 (14) | 0.0188 (3) | |
| C2 | 0.99257 (9) | 0.61559 (19) | 0.96548 (14) | 0.0222 (4) | |
| C3 | 0.96586 (9) | 0.46387 (18) | 0.91865 (14) | 0.0200 (3) | |
| C4 | 1.02036 (9) | 0.3555 (2) | 0.90385 (14) | 0.0253 (4) | |
| H4A | 1.0719 | 0.3803 | 0.9194 | 0.030* | |
| C5 | 0.99735 (10) | 0.2104 (2) | 0.86574 (15) | 0.0285 (4) | |
| H5A | 1.0334 | 0.1376 | 0.8550 | 0.034* | |
| C6 | 0.92023 (10) | 0.17437 (19) | 0.84364 (15) | 0.0259 (4) | |
| H6A | 0.9049 | 0.0765 | 0.8192 | 0.031* | |
| C7 | 0.86576 (9) | 0.28210 (18) | 0.85750 (14) | 0.0217 (3) | |
| H7A | 0.8143 | 0.2565 | 0.8424 | 0.026* | |
| C8 | 0.88811 (8) | 0.42821 (18) | 0.89389 (13) | 0.0181 (3) | |
| C9 | 0.82982 (8) | 0.55120 (17) | 0.90207 (14) | 0.0174 (3) | |
| C10 | 0.80278 (8) | 0.62935 (17) | 0.77805 (14) | 0.0167 (3) | |
| C11 | 0.76008 (9) | 0.78137 (17) | 0.78789 (13) | 0.0180 (3) | |
| H11A | 0.7260 | 0.7664 | 0.8419 | 0.022* | |
| H11B | 0.7974 | 0.8574 | 0.8201 | 0.022* | |
| C12 | 0.71318 (9) | 0.84730 (17) | 0.67768 (15) | 0.0217 (3) | |
| H12A | 0.6734 | 0.7732 | 0.6477 | 0.026* | |
| C13 | 0.75969 (10) | 0.8792 (2) | 0.58470 (15) | 0.0285 (4) | |
| H13A | 0.7803 | 0.7852 | 0.5620 | 0.043* | |
| H13B | 0.8006 | 0.9479 | 0.6135 | 0.043* | |
| H13C | 0.7274 | 0.9246 | 0.5201 | 0.043* | |
| C14 | 0.67409 (10) | 0.9933 (2) | 0.70714 (17) | 0.0306 (4) | |
| H14A | 0.6414 | 1.0315 | 0.6401 | 0.046* | |
| H14B | 0.7120 | 1.0686 | 0.7352 | 0.046* | |
| H14C | 0.6443 | 0.9716 | 0.7647 | 0.046* | |
| C15 | 0.87344 (8) | 0.65099 (17) | 0.72155 (14) | 0.0165 (3) | |
| C16 | 0.98383 (9) | 0.79217 (19) | 0.71419 (15) | 0.0230 (4) | |
| H16A | 1.0110 | 0.8807 | 0.7472 | 0.035* | |
| H16B | 0.9701 | 0.8053 | 0.6331 | 0.035* | |
| H16C | 1.0158 | 0.7037 | 0.7304 | 0.035* | |
| C17 | 0.68252 (8) | 0.48575 (17) | 0.69911 (14) | 0.0179 (3) | |
| C18 | 0.64504 (9) | 0.40140 (19) | 0.59393 (15) | 0.0248 (4) | |
| H18A | 0.6056 | 0.3365 | 0.6124 | 0.037* | |
| H18B | 0.6824 | 0.3404 | 0.5657 | 0.037* | |
| H18C | 0.6232 | 0.4734 | 0.5365 | 0.037* | |
| C19 | 0.96743 (10) | 0.84909 (19) | 1.06333 (17) | 0.0300 (4) | |
| H19A | 0.9273 | 0.8958 | 1.0952 | 0.045* | |
| H19B | 0.9839 | 0.9179 | 1.0100 | 0.045* | |
| H19C | 1.0096 | 0.8261 | 1.1233 | 0.045* | |
| H1N2 | 0.7798 (11) | 0.479 (2) | 0.6459 (18) | 0.025 (5)* | |
| H1O3 | 0.7237 (13) | 0.510 (2) | 0.8986 (18) | 0.037 (6)* |
| O1 | 0.0255 (6) | 0.0248 (6) | 0.0184 (7) | 0.0040 (4) | 0.0040 (5) | −0.0020 (5) |
| O2 | 0.0178 (6) | 0.0408 (7) | 0.0299 (8) | −0.0067 (5) | −0.0013 (5) | 0.0021 (6) |
| O3 | 0.0173 (5) | 0.0267 (6) | 0.0173 (7) | −0.0020 (4) | 0.0036 (5) | 0.0027 (5) |
| O4 | 0.0171 (5) | 0.0208 (5) | 0.0201 (7) | −0.0039 (4) | 0.0033 (4) | −0.0013 (5) |
| O5 | 0.0191 (5) | 0.0237 (5) | 0.0188 (7) | −0.0013 (4) | 0.0046 (4) | −0.0021 (5) |
| O6 | 0.0177 (5) | 0.0279 (6) | 0.0215 (7) | −0.0011 (4) | 0.0045 (5) | −0.0014 (5) |
| N1 | 0.0220 (7) | 0.0223 (7) | 0.0162 (8) | −0.0040 (5) | −0.0003 (5) | 0.0005 (6) |
| N2 | 0.0163 (7) | 0.0188 (7) | 0.0161 (8) | −0.0006 (5) | 0.0026 (6) | −0.0022 (5) |
| C1 | 0.0221 (8) | 0.0190 (7) | 0.0143 (9) | 0.0005 (6) | 0.0004 (6) | 0.0044 (6) |
| C2 | 0.0195 (8) | 0.0310 (9) | 0.0143 (9) | −0.0008 (6) | −0.0019 (6) | 0.0057 (7) |
| C3 | 0.0206 (8) | 0.0281 (8) | 0.0112 (9) | 0.0010 (6) | 0.0024 (6) | 0.0038 (7) |
| C4 | 0.0210 (8) | 0.0383 (10) | 0.0163 (10) | 0.0049 (7) | 0.0027 (7) | 0.0045 (7) |
| C5 | 0.0322 (10) | 0.0339 (10) | 0.0193 (11) | 0.0139 (7) | 0.0042 (7) | 0.0002 (7) |
| C6 | 0.0352 (10) | 0.0242 (9) | 0.0168 (10) | 0.0055 (7) | 0.0009 (7) | 0.0007 (7) |
| C7 | 0.0248 (8) | 0.0246 (8) | 0.0151 (9) | 0.0009 (7) | 0.0021 (6) | −0.0002 (7) |
| C8 | 0.0210 (8) | 0.0239 (8) | 0.0095 (9) | 0.0021 (6) | 0.0030 (6) | 0.0028 (6) |
| C9 | 0.0167 (7) | 0.0204 (8) | 0.0149 (9) | −0.0010 (6) | 0.0025 (6) | 0.0017 (6) |
| C10 | 0.0161 (7) | 0.0196 (7) | 0.0130 (9) | −0.0030 (6) | −0.0007 (6) | −0.0009 (6) |
| C11 | 0.0159 (7) | 0.0216 (8) | 0.0163 (9) | 0.0001 (6) | 0.0025 (6) | 0.0005 (6) |
| C12 | 0.0204 (7) | 0.0219 (8) | 0.0207 (10) | −0.0012 (6) | −0.0015 (6) | 0.0013 (7) |
| C13 | 0.0318 (9) | 0.0316 (9) | 0.0212 (10) | 0.0051 (7) | 0.0022 (7) | 0.0070 (8) |
| C14 | 0.0318 (9) | 0.0302 (9) | 0.0280 (12) | 0.0085 (7) | 0.0002 (8) | 0.0036 (8) |
| C15 | 0.0156 (7) | 0.0191 (8) | 0.0134 (9) | −0.0003 (6) | −0.0010 (6) | 0.0030 (6) |
| C16 | 0.0190 (8) | 0.0264 (8) | 0.0238 (10) | −0.0048 (6) | 0.0043 (7) | 0.0010 (7) |
| C17 | 0.0165 (7) | 0.0178 (7) | 0.0191 (10) | −0.0003 (6) | 0.0018 (6) | 0.0013 (6) |
| C18 | 0.0178 (8) | 0.0319 (9) | 0.0241 (10) | −0.0055 (7) | 0.0024 (7) | −0.0034 (8) |
| C19 | 0.0364 (10) | 0.0282 (9) | 0.0235 (10) | −0.0103 (7) | 0.0004 (8) | −0.0038 (8) |
| O1—C1 | 1.211 (2) | C8—C9 | 1.512 (2) |
| O2—C2 | 1.217 (2) | C9—C10 | 1.621 (2) |
| O3—C9 | 1.4032 (19) | C10—C15 | 1.543 (2) |
| O3—H1O3 | 0.86 (2) | C10—C11 | 1.549 (2) |
| O4—C15 | 1.3368 (18) | C11—C12 | 1.537 (2) |
| O4—C16 | 1.4531 (18) | C11—H11A | 0.9700 |
| O5—C15 | 1.201 (2) | C11—H11B | 0.9700 |
| O6—C17 | 1.236 (2) | C12—C13 | 1.525 (3) |
| N1—C1 | 1.3851 (19) | C12—C14 | 1.527 (2) |
| N1—C2 | 1.390 (2) | C12—H12A | 0.9800 |
| N1—C19 | 1.467 (2) | C13—H13A | 0.9600 |
| N2—C17 | 1.3420 (19) | C13—H13B | 0.9600 |
| N2—C10 | 1.4715 (19) | C13—H13C | 0.9600 |
| N2—H1N2 | 0.92 (2) | C14—H14A | 0.9600 |
| C1—C9 | 1.548 (2) | C14—H14B | 0.9600 |
| C2—C3 | 1.486 (2) | C14—H14C | 0.9600 |
| C3—C4 | 1.392 (2) | C16—H16A | 0.9600 |
| C3—C8 | 1.399 (2) | C16—H16B | 0.9600 |
| C4—C5 | 1.386 (3) | C16—H16C | 0.9600 |
| C4—H4A | 0.9300 | C17—C18 | 1.504 (2) |
| C5—C6 | 1.389 (3) | C18—H18A | 0.9600 |
| C5—H5A | 0.9300 | C18—H18B | 0.9600 |
| C6—C7 | 1.385 (2) | C18—H18C | 0.9600 |
| C6—H6A | 0.9300 | C19—H19A | 0.9600 |
| C7—C8 | 1.386 (2) | C19—H19B | 0.9600 |
| C7—H7A | 0.9300 | C19—H19C | 0.9600 |
| C9—O3—H1O3 | 113.6 (14) | C10—C11—H11A | 108.0 |
| C15—O4—C16 | 113.89 (13) | C12—C11—H11B | 108.0 |
| C1—N1—C2 | 124.49 (13) | C10—C11—H11B | 108.0 |
| C1—N1—C19 | 118.57 (13) | H11A—C11—H11B | 107.2 |
| C2—N1—C19 | 116.93 (13) | C13—C12—C14 | 110.13 (14) |
| C17—N2—C10 | 126.82 (13) | C13—C12—C11 | 114.00 (13) |
| C17—N2—H1N2 | 117.8 (12) | C14—C12—C11 | 108.57 (14) |
| C10—N2—H1N2 | 114.8 (12) | C13—C12—H12A | 108.0 |
| O1—C1—N1 | 121.72 (14) | C14—C12—H12A | 108.0 |
| O1—C1—C9 | 120.54 (14) | C11—C12—H12A | 108.0 |
| N1—C1—C9 | 117.67 (13) | C12—C13—H13A | 109.5 |
| O2—C2—N1 | 120.25 (15) | C12—C13—H13B | 109.5 |
| O2—C2—C3 | 122.84 (15) | H13A—C13—H13B | 109.5 |
| N1—C2—C3 | 116.87 (13) | C12—C13—H13C | 109.5 |
| C4—C3—C8 | 120.56 (15) | H13A—C13—H13C | 109.5 |
| C4—C3—C2 | 118.28 (14) | H13B—C13—H13C | 109.5 |
| C8—C3—C2 | 121.12 (14) | C12—C14—H14A | 109.5 |
| C5—C4—C3 | 119.65 (16) | C12—C14—H14B | 109.5 |
| C5—C4—H4A | 120.2 | H14A—C14—H14B | 109.5 |
| C3—C4—H4A | 120.2 | C12—C14—H14C | 109.5 |
| C4—C5—C6 | 119.64 (16) | H14A—C14—H14C | 109.5 |
| C4—C5—H5A | 120.2 | H14B—C14—H14C | 109.5 |
| C6—C5—H5A | 120.2 | O5—C15—O4 | 123.60 (14) |
| C7—C6—C5 | 120.92 (16) | O5—C15—C10 | 123.84 (13) |
| C7—C6—H6A | 119.5 | O4—C15—C10 | 112.54 (13) |
| C5—C6—H6A | 119.5 | O4—C16—H16A | 109.5 |
| C6—C7—C8 | 119.87 (15) | O4—C16—H16B | 109.5 |
| C6—C7—H7A | 120.1 | H16A—C16—H16B | 109.5 |
| C8—C7—H7A | 120.1 | O4—C16—H16C | 109.5 |
| C7—C8—C3 | 119.33 (14) | H16A—C16—H16C | 109.5 |
| C7—C8—C9 | 121.04 (13) | H16B—C16—H16C | 109.5 |
| C3—C8—C9 | 119.57 (14) | O6—C17—N2 | 123.78 (14) |
| O3—C9—C8 | 109.28 (12) | O6—C17—C18 | 121.61 (13) |
| O3—C9—C1 | 106.64 (13) | N2—C17—C18 | 114.60 (14) |
| C8—C9—C1 | 111.74 (12) | C17—C18—H18A | 109.5 |
| O3—C9—C10 | 109.99 (12) | C17—C18—H18B | 109.5 |
| C8—C9—C10 | 109.67 (13) | H18A—C18—H18B | 109.5 |
| C1—C9—C10 | 109.47 (12) | C17—C18—H18C | 109.5 |
| N2—C10—C15 | 103.07 (12) | H18A—C18—H18C | 109.5 |
| N2—C10—C11 | 112.55 (12) | H18B—C18—H18C | 109.5 |
| C15—C10—C11 | 112.23 (12) | N1—C19—H19A | 109.5 |
| N2—C10—C9 | 108.76 (12) | N1—C19—H19B | 109.5 |
| C15—C10—C9 | 108.54 (11) | H19A—C19—H19B | 109.5 |
| C11—C10—C9 | 111.30 (13) | N1—C19—H19C | 109.5 |
| C12—C11—C10 | 117.22 (13) | H19A—C19—H19C | 109.5 |
| C12—C11—H11A | 108.0 | H19B—C19—H19C | 109.5 |
| C2—N1—C1—O1 | 168.38 (15) | O1—C1—C9—C8 | −151.28 (14) |
| C19—N1—C1—O1 | −12.6 (2) | N1—C1—C9—C8 | 31.84 (19) |
| C2—N1—C1—C9 | −14.8 (2) | O1—C1—C9—C10 | 87.02 (17) |
| C19—N1—C1—C9 | 164.27 (14) | N1—C1—C9—C10 | −89.86 (15) |
| C1—N1—C2—O2 | 174.17 (15) | C17—N2—C10—C15 | −164.63 (14) |
| C19—N1—C2—O2 | −4.9 (2) | C17—N2—C10—C11 | −43.5 (2) |
| C1—N1—C2—C3 | −8.2 (2) | C17—N2—C10—C9 | 80.31 (18) |
| C19—N1—C2—C3 | 172.78 (14) | O3—C9—C10—N2 | −49.92 (16) |
| O2—C2—C3—C4 | 12.4 (2) | C8—C9—C10—N2 | 70.29 (15) |
| N1—C2—C3—C4 | −165.20 (15) | C1—C9—C10—N2 | −166.77 (12) |
| O2—C2—C3—C8 | −169.92 (15) | O3—C9—C10—C15 | −161.37 (12) |
| N1—C2—C3—C8 | 12.5 (2) | C8—C9—C10—C15 | −41.16 (16) |
| C8—C3—C4—C5 | −0.9 (2) | C1—C9—C10—C15 | 81.77 (14) |
| C2—C3—C4—C5 | 176.79 (16) | O3—C9—C10—C11 | 74.64 (15) |
| C3—C4—C5—C6 | −0.5 (3) | C8—C9—C10—C11 | −165.15 (12) |
| C4—C5—C6—C7 | 1.0 (3) | C1—C9—C10—C11 | −42.22 (16) |
| C5—C6—C7—C8 | 0.0 (3) | N2—C10—C11—C12 | −42.05 (18) |
| C6—C7—C8—C3 | −1.4 (2) | C15—C10—C11—C12 | 73.68 (17) |
| C6—C7—C8—C9 | 175.79 (15) | C9—C10—C11—C12 | −164.44 (12) |
| C4—C3—C8—C7 | 1.9 (2) | C10—C11—C12—C13 | −58.65 (18) |
| C2—C3—C8—C7 | −175.74 (15) | C10—C11—C12—C14 | 178.18 (13) |
| C4—C3—C8—C9 | −175.38 (15) | C16—O4—C15—O5 | −0.5 (2) |
| C2—C3—C8—C9 | 7.0 (2) | C16—O4—C15—C10 | 177.71 (12) |
| C7—C8—C9—O3 | 37.1 (2) | N2—C10—C15—O5 | −15.55 (19) |
| C3—C8—C9—O3 | −145.72 (14) | C11—C10—C15—O5 | −136.90 (15) |
| C7—C8—C9—C1 | 154.86 (15) | C9—C10—C15—O5 | 99.66 (17) |
| C3—C8—C9—C1 | −27.9 (2) | N2—C10—C15—O4 | 166.23 (12) |
| C7—C8—C9—C10 | −83.55 (17) | C11—C10—C15—O4 | 44.89 (17) |
| C3—C8—C9—C10 | 93.64 (17) | C9—C10—C15—O4 | −78.55 (14) |
| O1—C1—C9—O3 | −31.9 (2) | C10—N2—C17—O6 | −15.0 (2) |
| N1—C1—C9—O3 | 151.20 (13) | C10—N2—C17—C18 | 164.21 (14) |
| H··· | ||||
| N2—H1N2···O1i | 0.92 (2) | 2.511 (19) | 3.3431 (17) | 150.3 (15) |
| N2—H1N2···O3i | 0.92 (2) | 2.44 (2) | 3.1675 (18) | 135.6 (16) |
| O3—H1O3···O6 | 0.86 (2) | 1.83 (2) | 2.6543 (16) | 160 (2) |
| C5—H5A···O6ii | 0.93 | 2.59 | 3.469 (2) | 157 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H1 | 0.92 (2) | 2.511 (19) | 3.3431 (17) | 150.3 (15) |
| N2—H1 | 0.92 (2) | 2.44 (2) | 3.1675 (18) | 135.6 (16) |
| O3—H1 | 0.86 (2) | 1.83 (2) | 2.6543 (16) | 160 (2) |
| C5—H5 | 0.93 | 2.59 | 3.469 (2) | 157 |
Symmetry codes: (i) ; (ii) .