Literature DB >> 21837104

Methyl 2-acetamido-2-(4-hy-droxy-2-methyl-1,3-dioxo-1,2,3,4-tetra-hydro-isoquinolin-4-yl)-4-methyl-penta-noate.

Hoong-Kun Fun, Ching Kheng Quah, Kai Xu, Yan Zhang.   

Abstract

In the isoquinoline ring system of the title mol-ecule, C(19)H(24)N(2)O(6), the N-heterocyclic ring is in a half-boat conformation. The mol-ecular structure is stabilized by an intra-molecular O-H⋯O hydrogen bond, which generates an S(7) ring motif. In the crystal, mol-ecules are linked via inter-molecular bifurcated N-H⋯(O,O) and weak C-H⋯O hydrogen bonds into a three-dimensional network.

Entities:  

Year:  2011        PMID: 21837104      PMCID: PMC3151770          DOI: 10.1107/S1600536811022999

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and the potential biological activity of title compound, see: Yu et al. (2010 ▶); Huang et al. (2011 ▶); Rao et al. (1995 ▶); Nagamitsu et al. (1996 ▶); Evans & Weber (1986 ▶); Heimgartner (1991 ▶); Rando (1975 ▶); Griesbeck et al. (2003 ▶); Zhang et al. (2004 ▶); Wang et al. (2010 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶). For standard bond-length data, see: Allen et al. (1987 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For related structures, see: Fun et al. (2011a ▶,b ▶,c ▶,d ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C19H24N2O6 M = 376.40 Monoclinic, a = 17.8256 (15) Å b = 8.7584 (6) Å c = 11.9182 (8) Å β = 100.404 (5)° V = 1830.1 (2) Å3 Z = 4 Cu Kα radiation μ = 0.85 mm−1 T = 100 K 0.50 × 0.15 × 0.15 mm

Data collection

Bruker APEX DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.678, T max = 0.883 18268 measured reflections 2713 independent reflections 2673 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.024 wR(F 2) = 0.059 S = 1.05 2713 reflections 257 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.11 e Å−3 Δρmin = −0.14 e Å−3 Absolute structure: Flack (1983 ▶), 1204 Friedel pairs Flack parameter: 0.05 (13) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811022999/lh5262sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811022999/lh5262Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811022999/lh5262Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H24N2O6F(000) = 800
Mr = 376.40Dx = 1.366 Mg m3
Monoclinic, CcCu Kα radiation, λ = 1.54178 Å
Hall symbol: C -2ycCell parameters from 9888 reflections
a = 17.8256 (15) Åθ = 5.1–64.2°
b = 8.7584 (6) ŵ = 0.85 mm1
c = 11.9182 (8) ÅT = 100 K
β = 100.404 (5)°Needle, colourless
V = 1830.1 (2) Å30.50 × 0.15 × 0.15 mm
Z = 4
Bruker APEX DUO CCD area-detector diffractometer2713 independent reflections
Radiation source: fine-focus sealed tube2673 reflections with I > 2σ(I)
graphiteRint = 0.033
φ and ω scansθmax = 64.7°, θmin = 5.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −20→20
Tmin = 0.678, Tmax = 0.883k = −9→10
18268 measured reflectionsl = −12→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.024H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.059w = 1/[σ2(Fo2) + (0.0319P)2 + 0.7184P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
2713 reflectionsΔρmax = 0.11 e Å3
257 parametersΔρmin = −0.14 e Å3
2 restraintsAbsolute structure: Flack (1983), 1204 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.05 (13)
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.81985 (6)0.74615 (13)1.04040 (10)0.0229 (3)
O21.05834 (6)0.65801 (14)0.97375 (10)0.0302 (3)
O30.76692 (6)0.48621 (12)0.94001 (10)0.0204 (2)
O40.91523 (6)0.77211 (12)0.76247 (9)0.0193 (2)
O50.89019 (6)0.56633 (12)0.65074 (9)0.0204 (2)
O60.64674 (6)0.52211 (12)0.77471 (10)0.0223 (3)
N10.93918 (7)0.70763 (15)1.00450 (11)0.0206 (3)
N20.75643 (7)0.51865 (14)0.70247 (12)0.0171 (3)
C10.86194 (9)0.67556 (17)0.99008 (14)0.0188 (3)
C20.99257 (9)0.61559 (19)0.96548 (14)0.0222 (4)
C30.96586 (9)0.46387 (18)0.91865 (14)0.0200 (3)
C41.02036 (9)0.3555 (2)0.90385 (14)0.0253 (4)
H4A1.07190.38030.91940.030*
C50.99735 (10)0.2104 (2)0.86574 (15)0.0285 (4)
H5A1.03340.13760.85500.034*
C60.92023 (10)0.17437 (19)0.84364 (15)0.0259 (4)
H6A0.90490.07650.81920.031*
C70.86576 (9)0.28210 (18)0.85750 (14)0.0217 (3)
H7A0.81430.25650.84240.026*
C80.88811 (8)0.42821 (18)0.89389 (13)0.0181 (3)
C90.82982 (8)0.55120 (17)0.90207 (14)0.0174 (3)
C100.80278 (8)0.62935 (17)0.77805 (14)0.0167 (3)
C110.76008 (9)0.78137 (17)0.78789 (13)0.0180 (3)
H11A0.72600.76640.84190.022*
H11B0.79740.85740.82010.022*
C120.71318 (9)0.84730 (17)0.67768 (15)0.0217 (3)
H12A0.67340.77320.64770.026*
C130.75969 (10)0.8792 (2)0.58470 (15)0.0285 (4)
H13A0.78030.78520.56200.043*
H13B0.80060.94790.61350.043*
H13C0.72740.92460.52010.043*
C140.67409 (10)0.9933 (2)0.70714 (17)0.0306 (4)
H14A0.64141.03150.64010.046*
H14B0.71201.06860.73520.046*
H14C0.64430.97160.76470.046*
C150.87344 (8)0.65099 (17)0.72155 (14)0.0165 (3)
C160.98383 (9)0.79217 (19)0.71419 (15)0.0230 (4)
H16A1.01100.88070.74720.035*
H16B0.97010.80530.63310.035*
H16C1.01580.70370.73040.035*
C170.68252 (8)0.48575 (17)0.69911 (14)0.0179 (3)
C180.64504 (9)0.40140 (19)0.59393 (15)0.0248 (4)
H18A0.60560.33650.61240.037*
H18B0.68240.34040.56570.037*
H18C0.62320.47340.53650.037*
C190.96743 (10)0.84909 (19)1.06333 (17)0.0300 (4)
H19A0.92730.89581.09520.045*
H19B0.98390.91791.01000.045*
H19C1.00960.82611.12330.045*
H1N20.7798 (11)0.479 (2)0.6459 (18)0.025 (5)*
H1O30.7237 (13)0.510 (2)0.8986 (18)0.037 (6)*
U11U22U33U12U13U23
O10.0255 (6)0.0248 (6)0.0184 (7)0.0040 (4)0.0040 (5)−0.0020 (5)
O20.0178 (6)0.0408 (7)0.0299 (8)−0.0067 (5)−0.0013 (5)0.0021 (6)
O30.0173 (5)0.0267 (6)0.0173 (7)−0.0020 (4)0.0036 (5)0.0027 (5)
O40.0171 (5)0.0208 (5)0.0201 (7)−0.0039 (4)0.0033 (4)−0.0013 (5)
O50.0191 (5)0.0237 (5)0.0188 (7)−0.0013 (4)0.0046 (4)−0.0021 (5)
O60.0177 (5)0.0279 (6)0.0215 (7)−0.0011 (4)0.0045 (5)−0.0014 (5)
N10.0220 (7)0.0223 (7)0.0162 (8)−0.0040 (5)−0.0003 (5)0.0005 (6)
N20.0163 (7)0.0188 (7)0.0161 (8)−0.0006 (5)0.0026 (6)−0.0022 (5)
C10.0221 (8)0.0190 (7)0.0143 (9)0.0005 (6)0.0004 (6)0.0044 (6)
C20.0195 (8)0.0310 (9)0.0143 (9)−0.0008 (6)−0.0019 (6)0.0057 (7)
C30.0206 (8)0.0281 (8)0.0112 (9)0.0010 (6)0.0024 (6)0.0038 (7)
C40.0210 (8)0.0383 (10)0.0163 (10)0.0049 (7)0.0027 (7)0.0045 (7)
C50.0322 (10)0.0339 (10)0.0193 (11)0.0139 (7)0.0042 (7)0.0002 (7)
C60.0352 (10)0.0242 (9)0.0168 (10)0.0055 (7)0.0009 (7)0.0007 (7)
C70.0248 (8)0.0246 (8)0.0151 (9)0.0009 (7)0.0021 (6)−0.0002 (7)
C80.0210 (8)0.0239 (8)0.0095 (9)0.0021 (6)0.0030 (6)0.0028 (6)
C90.0167 (7)0.0204 (8)0.0149 (9)−0.0010 (6)0.0025 (6)0.0017 (6)
C100.0161 (7)0.0196 (7)0.0130 (9)−0.0030 (6)−0.0007 (6)−0.0009 (6)
C110.0159 (7)0.0216 (8)0.0163 (9)0.0001 (6)0.0025 (6)0.0005 (6)
C120.0204 (7)0.0219 (8)0.0207 (10)−0.0012 (6)−0.0015 (6)0.0013 (7)
C130.0318 (9)0.0316 (9)0.0212 (10)0.0051 (7)0.0022 (7)0.0070 (8)
C140.0318 (9)0.0302 (9)0.0280 (12)0.0085 (7)0.0002 (8)0.0036 (8)
C150.0156 (7)0.0191 (8)0.0134 (9)−0.0003 (6)−0.0010 (6)0.0030 (6)
C160.0190 (8)0.0264 (8)0.0238 (10)−0.0048 (6)0.0043 (7)0.0010 (7)
C170.0165 (7)0.0178 (7)0.0191 (10)−0.0003 (6)0.0018 (6)0.0013 (6)
C180.0178 (8)0.0319 (9)0.0241 (10)−0.0055 (7)0.0024 (7)−0.0034 (8)
C190.0364 (10)0.0282 (9)0.0235 (10)−0.0103 (7)0.0004 (8)−0.0038 (8)
O1—C11.211 (2)C8—C91.512 (2)
O2—C21.217 (2)C9—C101.621 (2)
O3—C91.4032 (19)C10—C151.543 (2)
O3—H1O30.86 (2)C10—C111.549 (2)
O4—C151.3368 (18)C11—C121.537 (2)
O4—C161.4531 (18)C11—H11A0.9700
O5—C151.201 (2)C11—H11B0.9700
O6—C171.236 (2)C12—C131.525 (3)
N1—C11.3851 (19)C12—C141.527 (2)
N1—C21.390 (2)C12—H12A0.9800
N1—C191.467 (2)C13—H13A0.9600
N2—C171.3420 (19)C13—H13B0.9600
N2—C101.4715 (19)C13—H13C0.9600
N2—H1N20.92 (2)C14—H14A0.9600
C1—C91.548 (2)C14—H14B0.9600
C2—C31.486 (2)C14—H14C0.9600
C3—C41.392 (2)C16—H16A0.9600
C3—C81.399 (2)C16—H16B0.9600
C4—C51.386 (3)C16—H16C0.9600
C4—H4A0.9300C17—C181.504 (2)
C5—C61.389 (3)C18—H18A0.9600
C5—H5A0.9300C18—H18B0.9600
C6—C71.385 (2)C18—H18C0.9600
C6—H6A0.9300C19—H19A0.9600
C7—C81.386 (2)C19—H19B0.9600
C7—H7A0.9300C19—H19C0.9600
C9—O3—H1O3113.6 (14)C10—C11—H11A108.0
C15—O4—C16113.89 (13)C12—C11—H11B108.0
C1—N1—C2124.49 (13)C10—C11—H11B108.0
C1—N1—C19118.57 (13)H11A—C11—H11B107.2
C2—N1—C19116.93 (13)C13—C12—C14110.13 (14)
C17—N2—C10126.82 (13)C13—C12—C11114.00 (13)
C17—N2—H1N2117.8 (12)C14—C12—C11108.57 (14)
C10—N2—H1N2114.8 (12)C13—C12—H12A108.0
O1—C1—N1121.72 (14)C14—C12—H12A108.0
O1—C1—C9120.54 (14)C11—C12—H12A108.0
N1—C1—C9117.67 (13)C12—C13—H13A109.5
O2—C2—N1120.25 (15)C12—C13—H13B109.5
O2—C2—C3122.84 (15)H13A—C13—H13B109.5
N1—C2—C3116.87 (13)C12—C13—H13C109.5
C4—C3—C8120.56 (15)H13A—C13—H13C109.5
C4—C3—C2118.28 (14)H13B—C13—H13C109.5
C8—C3—C2121.12 (14)C12—C14—H14A109.5
C5—C4—C3119.65 (16)C12—C14—H14B109.5
C5—C4—H4A120.2H14A—C14—H14B109.5
C3—C4—H4A120.2C12—C14—H14C109.5
C4—C5—C6119.64 (16)H14A—C14—H14C109.5
C4—C5—H5A120.2H14B—C14—H14C109.5
C6—C5—H5A120.2O5—C15—O4123.60 (14)
C7—C6—C5120.92 (16)O5—C15—C10123.84 (13)
C7—C6—H6A119.5O4—C15—C10112.54 (13)
C5—C6—H6A119.5O4—C16—H16A109.5
C6—C7—C8119.87 (15)O4—C16—H16B109.5
C6—C7—H7A120.1H16A—C16—H16B109.5
C8—C7—H7A120.1O4—C16—H16C109.5
C7—C8—C3119.33 (14)H16A—C16—H16C109.5
C7—C8—C9121.04 (13)H16B—C16—H16C109.5
C3—C8—C9119.57 (14)O6—C17—N2123.78 (14)
O3—C9—C8109.28 (12)O6—C17—C18121.61 (13)
O3—C9—C1106.64 (13)N2—C17—C18114.60 (14)
C8—C9—C1111.74 (12)C17—C18—H18A109.5
O3—C9—C10109.99 (12)C17—C18—H18B109.5
C8—C9—C10109.67 (13)H18A—C18—H18B109.5
C1—C9—C10109.47 (12)C17—C18—H18C109.5
N2—C10—C15103.07 (12)H18A—C18—H18C109.5
N2—C10—C11112.55 (12)H18B—C18—H18C109.5
C15—C10—C11112.23 (12)N1—C19—H19A109.5
N2—C10—C9108.76 (12)N1—C19—H19B109.5
C15—C10—C9108.54 (11)H19A—C19—H19B109.5
C11—C10—C9111.30 (13)N1—C19—H19C109.5
C12—C11—C10117.22 (13)H19A—C19—H19C109.5
C12—C11—H11A108.0H19B—C19—H19C109.5
C2—N1—C1—O1168.38 (15)O1—C1—C9—C8−151.28 (14)
C19—N1—C1—O1−12.6 (2)N1—C1—C9—C831.84 (19)
C2—N1—C1—C9−14.8 (2)O1—C1—C9—C1087.02 (17)
C19—N1—C1—C9164.27 (14)N1—C1—C9—C10−89.86 (15)
C1—N1—C2—O2174.17 (15)C17—N2—C10—C15−164.63 (14)
C19—N1—C2—O2−4.9 (2)C17—N2—C10—C11−43.5 (2)
C1—N1—C2—C3−8.2 (2)C17—N2—C10—C980.31 (18)
C19—N1—C2—C3172.78 (14)O3—C9—C10—N2−49.92 (16)
O2—C2—C3—C412.4 (2)C8—C9—C10—N270.29 (15)
N1—C2—C3—C4−165.20 (15)C1—C9—C10—N2−166.77 (12)
O2—C2—C3—C8−169.92 (15)O3—C9—C10—C15−161.37 (12)
N1—C2—C3—C812.5 (2)C8—C9—C10—C15−41.16 (16)
C8—C3—C4—C5−0.9 (2)C1—C9—C10—C1581.77 (14)
C2—C3—C4—C5176.79 (16)O3—C9—C10—C1174.64 (15)
C3—C4—C5—C6−0.5 (3)C8—C9—C10—C11−165.15 (12)
C4—C5—C6—C71.0 (3)C1—C9—C10—C11−42.22 (16)
C5—C6—C7—C80.0 (3)N2—C10—C11—C12−42.05 (18)
C6—C7—C8—C3−1.4 (2)C15—C10—C11—C1273.68 (17)
C6—C7—C8—C9175.79 (15)C9—C10—C11—C12−164.44 (12)
C4—C3—C8—C71.9 (2)C10—C11—C12—C13−58.65 (18)
C2—C3—C8—C7−175.74 (15)C10—C11—C12—C14178.18 (13)
C4—C3—C8—C9−175.38 (15)C16—O4—C15—O5−0.5 (2)
C2—C3—C8—C97.0 (2)C16—O4—C15—C10177.71 (12)
C7—C8—C9—O337.1 (2)N2—C10—C15—O5−15.55 (19)
C3—C8—C9—O3−145.72 (14)C11—C10—C15—O5−136.90 (15)
C7—C8—C9—C1154.86 (15)C9—C10—C15—O599.66 (17)
C3—C8—C9—C1−27.9 (2)N2—C10—C15—O4166.23 (12)
C7—C8—C9—C10−83.55 (17)C11—C10—C15—O444.89 (17)
C3—C8—C9—C1093.64 (17)C9—C10—C15—O4−78.55 (14)
O1—C1—C9—O3−31.9 (2)C10—N2—C17—O6−15.0 (2)
N1—C1—C9—O3151.20 (13)C10—N2—C17—C18164.21 (14)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O1i0.92 (2)2.511 (19)3.3431 (17)150.3 (15)
N2—H1N2···O3i0.92 (2)2.44 (2)3.1675 (18)135.6 (16)
O3—H1O3···O60.86 (2)1.83 (2)2.6543 (16)160 (2)
C5—H5A···O6ii0.932.593.469 (2)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N2⋯O1i0.92 (2)2.511 (19)3.3431 (17)150.3 (15)
N2—H1N2⋯O3i0.92 (2)2.44 (2)3.1675 (18)135.6 (16)
O3—H1O3⋯O60.86 (2)1.83 (2)2.6543 (16)160 (2)
C5—H5A⋯O6ii0.932.593.469 (2)157

Symmetry codes: (i) ; (ii) .

  11 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Yan Zhang; Lei Wang; Min Zhang; Hoong-Kun Fun; Jian-Hua Xu
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3.  Facile synthesis of spiroisoquinolines based on photocycloaddition of isoquinoline-1,3,4-trione with oxazoles.

Authors:  Chengmei Huang; Haitao Yu; Zhengrui Miao; Jie Zhou; Shuai Wang; Hoong-Kun Fun; Jianhua Xu; Yan Zhang
Journal:  Org Biomol Chem       Date:  2011-04-06       Impact factor: 3.876

4.  Synthesis of erythro-alpha-amino beta-hydroxy carboxylic acid esters by diastereoselective photocycloaddition of 5-methoxyoxazoles with aldehydes.

Authors:  Axel G Griesbeck; Samir Bondock; Johann Lex
Journal:  J Org Chem       Date:  2003-12-26       Impact factor: 4.354

5.  Photoinduced [4 + 4], [4 + 2], and [2 + 2] cycloadditions of o-quinones with oxazoles: chemo-, regio-, and diastereoselectivity.

Authors:  Lei Wang; Yu-Cheng Huang; Yang Liu; Hoong-Kun Fun; Yan Zhang; Jian-Hua Xu
Journal:  J Org Chem       Date:  2010-10-28       Impact factor: 4.354

6.  (1S*,4'S*,5R*)-1-Isobutyl-5-meth-oxy-2',3-dimethyl-4,6-dioxa-2-aza-spiro-[bicyclo-[3.2.0]hept-2-ene-7,4'-isoquinoline]-1',3'(2'H,4'H)-dione.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; Chengmei Huang; Haitao Yu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-29

7.  (1S*,4'S*,5R*)-1-Isopropyl-5-meth-oxy-2',3-dimethyl-4,6-dioxa-2-aza-spiro-[bicyclo-[3.2.0]hept-2-ene-7,4'-isoquinoline]-1',3'(2'H,4'H)-dione.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; Chengmei Huang; Haitao Yu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-29

8.  5-Meth-oxy-1,2',3-trimethyl-4,6-dioxa-2-aza-spiro-[bicyclo-[3.2.0]hept-2-ene-7,4'-isoquinoline]-1',3'(2'H,4'H)-dione.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; Chengmei Huang; Haitao Yu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-07

9.  1-Benzyl-5-meth-oxy-2',3-dimethyl-4,6-dioxa-2-aza-spiro-[bicyclo-[3.2.0]hept-2-ene-7,4'-isoquinoline]-1',3'(2'H,4'H)-dione.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; Chengmei Huang; Haitao Yu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-07

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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