Literature DB >> 21754534

(3-Phenyl-sulfanyl-1-phenyl-sulfonyl-1H-indol-2-yl)methyl acetate.

Alagappa Rammohan, E Govindan, A Subbiahpandi, R Sureshbabu, A K Mohana Krishnan.   

Abstract

In the title compound, C(23)H(19)NO(4)S(2), the indole ring system makes dihedral angles of 89.6 (1) and 84.5 (8)° with the phenyl-sulfonyl and phenyl-sulfanyl rings, respectively. In the crystal, the mol-ecules are linked into C(10) chains running along the c axis by an inter-molecular C-H⋯O hydrogen bond. In addition, the crystal packing is stabilized by C-H⋯π inter-actions.

Entities:  

Year:  2011        PMID: 21754534      PMCID: PMC3089099          DOI: 10.1107/S1600536811014802

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological activities of indole derivatives, see: Singh et al. (2000 ▶); Andreani et al. (2001 ▶); Quetin-Leclercq (1994 ▶); Mukhopadhyay et al. (1981 ▶); Taylor et al. (1999 ▶); Williams et al. (1993 ▶); Sivaraman et al. (1996 ▶). For related structures, see: Ravishankar et al. (2005 ▶); Chakkaravarthi et al. (2008 ▶). For graph-set notation of hydrogen bonds, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C23H19NO4S2 M = 437.51 Monoclinic, a = 14.6530 (6) Å b = 9.4482 (4) Å c = 15.2461 (7) Å β = 97.055 (3)° V = 2094.76 (16) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 293 K 0.25 × 0.22 × 0.19 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.981, T max = 0.985 19397 measured reflections 5235 independent reflections 3638 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.104 S = 1.03 5235 reflections 272 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.29 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811014802/bt5514sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811014802/bt5514Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811014802/bt5514Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H19NO4S2F(000) = 912
Mr = 437.51Dx = 1.387 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5235 reflections
a = 14.6530 (6) Åθ = 1.4–28.4°
b = 9.4482 (4) ŵ = 0.29 mm1
c = 15.2461 (7) ÅT = 293 K
β = 97.055 (3)°Block, white
V = 2094.76 (16) Å30.25 × 0.22 × 0.19 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer5235 independent reflections
Radiation source: fine-focus sealed tube3638 reflections with I > 2σ(I)
graphiteRint = 0.027
ω and φ scansθmax = 28.4°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −19→19
Tmin = 0.981, Tmax = 0.985k = −11→12
19397 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.104H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0433P)2 + 0.4791P] where P = (Fo2 + 2Fc2)/3
5235 reflections(Δ/σ)max < 0.001
272 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.16888 (11)0.62556 (16)0.35882 (10)0.0387 (4)
C20.09311 (12)0.55131 (18)0.38072 (11)0.0463 (4)
H20.03490.56450.35000.056*
C30.10805 (13)0.45722 (19)0.44998 (12)0.0530 (4)
H30.05860.40570.46600.064*
C40.19466 (14)0.43671 (19)0.49671 (12)0.0543 (5)
H40.20190.37280.54340.065*
C50.26938 (13)0.50947 (18)0.47475 (11)0.0482 (4)
H50.32730.49590.50610.058*
C60.25666 (11)0.60461 (16)0.40419 (10)0.0410 (4)
C70.31844 (11)0.69850 (17)0.36612 (11)0.0424 (4)
C80.27026 (11)0.77336 (17)0.30037 (11)0.0422 (4)
C90.30417 (12)0.89164 (18)0.24908 (12)0.0494 (4)
H9A0.37080.88980.25360.059*
H9B0.27950.88420.18720.059*
C100.28751 (13)1.14037 (19)0.24295 (13)0.0534 (4)
C110.2490 (2)1.2651 (2)0.28528 (19)0.0882 (8)
H11A0.26191.34950.25400.132*
H11B0.27651.27220.34560.132*
H11C0.18371.25410.28360.132*
C120.07661 (13)0.49985 (18)0.14300 (12)0.0522 (4)
H120.04900.47750.19300.063*
C130.08604 (15)0.3989 (2)0.08013 (13)0.0622 (5)
H130.06560.30710.08800.075*
C140.12545 (14)0.4326 (2)0.00578 (13)0.0600 (5)
H140.13110.3637−0.03680.072*
C150.15663 (14)0.5672 (2)−0.00607 (12)0.0598 (5)
H150.18310.5894−0.05670.072*
C160.14880 (12)0.66998 (19)0.05698 (11)0.0506 (4)
H160.17030.76120.04950.061*
C170.10864 (10)0.63531 (16)0.13106 (10)0.0391 (3)
C180.43670 (12)0.7939 (2)0.50554 (13)0.0557 (5)
C190.39555 (14)0.9229 (3)0.51322 (15)0.0681 (6)
H190.36560.96750.46340.082*
C200.39877 (17)0.9870 (3)0.59577 (18)0.0861 (8)
H200.36921.07300.60180.103*
C210.4459 (2)0.9222 (4)0.66824 (17)0.0938 (9)
H210.44890.96540.72330.113*
C220.48819 (18)0.7960 (4)0.66036 (17)0.0896 (8)
H220.52030.75370.70990.108*
C230.48383 (15)0.7297 (3)0.57906 (15)0.0736 (6)
H230.51230.64260.57390.088*
N10.17660 (9)0.73225 (14)0.29437 (9)0.0405 (3)
O10.01013 (8)0.74327 (13)0.24414 (9)0.0550 (3)
O20.11545 (9)0.90024 (12)0.17575 (8)0.0561 (3)
O30.27314 (8)1.02147 (12)0.28681 (8)0.0544 (3)
O40.32709 (11)1.14258 (15)0.17888 (9)0.0712 (4)
S10.09482 (3)0.76585 (4)0.21008 (3)0.04212 (12)
S20.43695 (3)0.71174 (6)0.40011 (3)0.05871 (15)
U11U22U33U12U13U23
C10.0493 (9)0.0344 (8)0.0324 (8)−0.0008 (7)0.0050 (7)−0.0040 (7)
C20.0514 (10)0.0450 (9)0.0421 (10)−0.0070 (8)0.0040 (8)−0.0032 (8)
C30.0662 (12)0.0463 (10)0.0473 (11)−0.0130 (9)0.0105 (9)0.0007 (8)
C40.0806 (13)0.0408 (9)0.0405 (10)−0.0069 (9)0.0033 (9)0.0048 (8)
C50.0604 (11)0.0417 (9)0.0404 (9)0.0018 (8)−0.0027 (8)−0.0027 (8)
C60.0519 (9)0.0353 (8)0.0355 (9)0.0005 (7)0.0036 (7)−0.0066 (7)
C70.0454 (9)0.0422 (9)0.0397 (9)−0.0008 (7)0.0057 (7)−0.0065 (7)
C80.0481 (9)0.0408 (9)0.0390 (9)−0.0030 (7)0.0105 (7)−0.0067 (7)
C90.0580 (10)0.0438 (9)0.0487 (10)−0.0043 (8)0.0162 (8)−0.0032 (8)
C100.0585 (11)0.0451 (10)0.0539 (12)−0.0092 (8)−0.0044 (9)0.0015 (9)
C110.113 (2)0.0501 (13)0.102 (2)0.0067 (12)0.0184 (16)−0.0035 (13)
C120.0707 (12)0.0442 (10)0.0436 (10)−0.0074 (8)0.0148 (9)0.0013 (8)
C130.0913 (15)0.0389 (10)0.0581 (12)−0.0086 (10)0.0158 (11)−0.0035 (9)
C140.0825 (14)0.0500 (11)0.0482 (11)0.0101 (10)0.0100 (10)−0.0079 (9)
C150.0806 (13)0.0579 (12)0.0446 (11)0.0002 (10)0.0220 (10)0.0007 (9)
C160.0657 (11)0.0422 (9)0.0455 (10)−0.0056 (8)0.0128 (9)0.0043 (8)
C170.0436 (8)0.0376 (8)0.0354 (9)0.0030 (7)0.0015 (7)0.0017 (7)
C180.0447 (10)0.0705 (13)0.0511 (11)−0.0171 (9)0.0025 (8)−0.0018 (10)
C190.0653 (13)0.0789 (15)0.0596 (13)−0.0093 (11)0.0061 (10)−0.0100 (11)
C200.0887 (17)0.0921 (18)0.0806 (18)−0.0225 (14)0.0230 (14)−0.0285 (15)
C210.101 (2)0.126 (3)0.0559 (15)−0.0570 (19)0.0151 (14)−0.0210 (17)
C220.0854 (18)0.126 (2)0.0537 (15)−0.0416 (17)−0.0083 (12)0.0084 (16)
C230.0645 (13)0.0873 (16)0.0653 (15)−0.0191 (11)−0.0060 (11)0.0076 (13)
N10.0465 (7)0.0395 (7)0.0350 (7)−0.0020 (6)0.0034 (6)0.0009 (6)
O10.0473 (7)0.0625 (8)0.0560 (8)0.0126 (6)0.0097 (6)−0.0015 (6)
O20.0733 (8)0.0355 (6)0.0579 (8)0.0073 (6)0.0010 (6)0.0053 (6)
O30.0705 (8)0.0421 (7)0.0537 (7)−0.0073 (6)0.0205 (6)−0.0047 (6)
O40.0962 (11)0.0635 (9)0.0545 (9)−0.0183 (8)0.0113 (8)0.0085 (7)
S10.0477 (2)0.0375 (2)0.0408 (2)0.00722 (17)0.00382 (18)0.00013 (17)
S20.0446 (3)0.0741 (3)0.0573 (3)−0.0010 (2)0.0058 (2)−0.0084 (3)
C1—C21.388 (2)C12—C171.383 (2)
C1—C61.398 (2)C12—H120.9300
C1—N11.422 (2)C13—C141.371 (3)
C2—C31.377 (2)C13—H130.9300
C2—H20.9300C14—C151.371 (3)
C3—C41.391 (3)C14—H140.9300
C3—H30.9300C15—C161.381 (3)
C4—C51.369 (2)C15—H150.9300
C4—H40.9300C16—C171.376 (2)
C5—C61.397 (2)C16—H160.9300
C5—H50.9300C17—S11.7532 (16)
C6—C71.440 (2)C18—C191.371 (3)
C7—C81.353 (2)C18—C231.382 (3)
C7—S21.7545 (17)C18—S21.785 (2)
C8—N11.418 (2)C19—C201.392 (3)
C8—C91.484 (2)C19—H190.9300
C9—O31.451 (2)C20—C211.373 (4)
C9—H9A0.9700C20—H200.9300
C9—H9B0.9700C21—C221.356 (4)
C10—O41.196 (2)C21—H210.9300
C10—O31.337 (2)C22—C231.383 (4)
C10—C111.488 (3)C22—H220.9300
C11—H11A0.9600C23—H230.9300
C11—H11B0.9600N1—S11.6763 (14)
C11—H11C0.9600O1—S11.4190 (12)
C12—C131.371 (3)O2—S11.4201 (12)
C2—C1—C6121.60 (15)C12—C13—H13119.8
C2—C1—N1131.17 (15)C14—C13—H13119.8
C6—C1—N1107.21 (13)C15—C14—C13120.33 (18)
C3—C2—C1117.01 (17)C15—C14—H14119.8
C3—C2—H2121.5C13—C14—H14119.8
C1—C2—H2121.5C14—C15—C16120.22 (17)
C2—C3—C4122.14 (17)C14—C15—H15119.9
C2—C3—H3118.9C16—C15—H15119.9
C4—C3—H3118.9C17—C16—C15118.97 (16)
C5—C4—C3120.78 (17)C17—C16—H16120.5
C5—C4—H4119.6C15—C16—H16120.5
C3—C4—H4119.6C16—C17—C12120.98 (15)
C4—C5—C6118.46 (17)C16—C17—S1119.59 (13)
C4—C5—H5120.8C12—C17—S1119.40 (12)
C6—C5—H5120.8C19—C18—C23120.1 (2)
C5—C6—C1120.00 (15)C19—C18—S2120.85 (16)
C5—C6—C7132.54 (16)C23—C18—S2118.90 (18)
C1—C6—C7107.41 (14)C18—C19—C20119.8 (2)
C8—C7—C6108.92 (14)C18—C19—H19120.1
C8—C7—S2126.09 (13)C20—C19—H19120.1
C6—C7—S2124.99 (13)C21—C20—C19119.4 (3)
C7—C8—N1108.51 (14)C21—C20—H20120.3
C7—C8—C9127.31 (15)C19—C20—H20120.3
N1—C8—C9123.79 (15)C22—C21—C20120.7 (3)
O3—C9—C8106.62 (12)C22—C21—H21119.6
O3—C9—H9A110.4C20—C21—H21119.6
C8—C9—H9A110.4C21—C22—C23120.4 (3)
O3—C9—H9B110.4C21—C22—H22119.8
C8—C9—H9B110.4C23—C22—H22119.8
H9A—C9—H9B108.6C18—C23—C22119.4 (3)
O4—C10—O3123.03 (18)C18—C23—H23120.3
O4—C10—C11126.05 (19)C22—C23—H23120.3
O3—C10—C11110.92 (18)C8—N1—C1107.94 (13)
C10—C11—H11A109.5C8—N1—S1126.33 (11)
C10—C11—H11B109.5C1—N1—S1123.64 (11)
H11A—C11—H11B109.5C10—O3—C9115.82 (13)
C10—C11—H11C109.5O1—S1—O2120.31 (7)
H11A—C11—H11C109.5O1—S1—N1105.42 (7)
H11B—C11—H11C109.5O2—S1—N1106.70 (7)
C13—C12—C17119.13 (16)O1—S1—C17109.01 (8)
C13—C12—H12120.4O2—S1—C17109.15 (8)
C17—C12—H12120.4N1—S1—C17105.16 (7)
C12—C13—C14120.36 (17)C7—S2—C18100.69 (8)
C6—C1—C2—C30.8 (2)C19—C20—C21—C22−0.9 (4)
N1—C1—C2—C3−177.37 (16)C20—C21—C22—C23−0.5 (4)
C1—C2—C3—C40.2 (3)C19—C18—C23—C220.7 (3)
C2—C3—C4—C5−0.6 (3)S2—C18—C23—C22176.63 (16)
C3—C4—C5—C6−0.1 (3)C21—C22—C23—C180.6 (3)
C4—C5—C6—C11.1 (2)C7—C8—N1—C1−1.09 (17)
C4—C5—C6—C7178.16 (17)C9—C8—N1—C1−174.33 (14)
C2—C1—C6—C5−1.5 (2)C7—C8—N1—S1−165.03 (11)
N1—C1—C6—C5177.06 (14)C9—C8—N1—S121.7 (2)
C2—C1—C6—C7−179.21 (14)C2—C1—N1—C8179.43 (16)
N1—C1—C6—C7−0.66 (16)C6—C1—N1—C81.06 (16)
C5—C6—C7—C8−177.32 (17)C2—C1—N1—S1−16.1 (2)
C1—C6—C7—C8−0.01 (18)C6—C1—N1—S1165.54 (11)
C5—C6—C7—S22.9 (3)O4—C10—O3—C9−3.4 (3)
C1—C6—C7—S2−179.79 (12)C11—C10—O3—C9177.29 (17)
C6—C7—C8—N10.68 (18)C8—C9—O3—C10−172.38 (15)
S2—C7—C8—N1−179.54 (11)C8—N1—S1—O1−163.03 (13)
C6—C7—C8—C9173.61 (15)C1—N1—S1—O135.40 (14)
S2—C7—C8—C9−6.6 (2)C8—N1—S1—O2−34.03 (15)
C7—C8—C9—O3−100.22 (19)C1—N1—S1—O2164.40 (12)
N1—C8—C9—O371.71 (19)C8—N1—S1—C1781.83 (14)
C17—C12—C13—C14−1.0 (3)C1—N1—S1—C17−79.75 (13)
C12—C13—C14—C150.6 (3)C16—C17—S1—O1143.04 (14)
C13—C14—C15—C160.2 (3)C12—C17—S1—O1−35.16 (16)
C14—C15—C16—C17−0.6 (3)C16—C17—S1—O29.83 (16)
C15—C16—C17—C120.2 (3)C12—C17—S1—O2−168.37 (14)
C15—C16—C17—S1−177.98 (14)C16—C17—S1—N1−104.33 (14)
C13—C12—C17—C160.6 (3)C12—C17—S1—N177.48 (15)
C13—C12—C17—S1178.76 (15)C8—C7—S2—C18110.04 (16)
C23—C18—C19—C20−2.1 (3)C6—C7—S2—C18−70.22 (16)
S2—C18—C19—C20−177.95 (16)C19—C18—S2—C7−58.87 (17)
C18—C19—C20—C212.2 (3)C23—C18—S2—C7125.22 (16)
Cg1 and Cg2 are the centroids of the N1/C1/C6–C8 and C1–C6 rings, respectively.
D—H···AD—HH···AD···AD—H···A
C4—H4···O4i0.932.593.274 (2)131.
C15—H15···Cg1ii0.932.773.559 (2)143
C16—H16···Cg2ii0.932.723.5146 (19)143
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the N1/C1/C6–C8 and C1–C6 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4⋯O4i0.932.593.274 (2)131
C15—H15⋯Cg1ii0.932.773.559 (2)143
C16—H16⋯Cg2ii0.932.723.5146 (19)143

Symmetry codes: (i) ; (ii) .

  9 in total

1.  Antifungal activity of venenatine, an indole alkaloid isolated from Alstonia venenata.

Authors:  U P Singh; B K Sarma; P K Mishra; A B Ray
Journal:  Folia Microbiol (Praha)       Date:  2000       Impact factor: 2.099

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  [Potential anticancer and antiparasitic indole alkaloids].

Authors:  J Quetin-Leclercq
Journal:  J Pharm Belg       Date:  1994 May-Jun

4.  Pyrido [1,2a] indole derivatives identified as novel non-nucleoside reverse transcriptase inhibitors of human immunodeficiency virus type 1.

Authors:  D L Taylor; P S Ahmed; P Chambers; A S Tyms; J Bedard; J Duchaine; G Falardeau; J F Lavallée; W Brown; R F Rando; T Bowlin
Journal:  Antivir Chem Chemother       Date:  1999-03

5.  Synthesis and antitumor activity of substituted 3-(5-imidazo[2,1-b]thiazolylmethylene)-2-indolinones.

Authors:  A Andreani; M Granaiola; A Leoni; A Locatelli; R Morigi; M Rambaldi; G Giorgi; L Salvini; V Garaliene
Journal:  Anticancer Drug Des       Date:  2001 Apr-Jun

6.  5-chloro-3-(phenylsulfonyl)indole-2-carboxamide: a novel, non-nucleoside inhibitor of HIV-1 reverse transcriptase.

Authors:  T M Williams; T M Ciccarone; S C MacTough; C S Rooney; S K Balani; J H Condra; E A Emini; M E Goldman; W J Greenlee; L R Kauffman
Journal:  J Med Chem       Date:  1993-04-30       Impact factor: 7.446

7.  (2-Methyl-1-phenyl-sulfonyl-1H-indol-3-yl)methanol.

Authors:  G Chakkaravarthi; V Dhayalan; A K Mohanakrishnan; V Manivannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-30

8.  Anticancer indole alkaloids of Rhazya stricta.

Authors:  S Mukhopadhyay; G A Handy; S Funayama; G A Cordell
Journal:  J Nat Prod       Date:  1981 Nov-Dec       Impact factor: 4.050

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  9 in total

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