Literature DB >> 21754368

1-(2-Chloro-phenyl)-6-fluoro-2-methyl-1H-indole-3-carbonitrile.

Kun Yang, Pei-Fan Li, Yan Liu, Zhi-Zhong Fang.   

Abstract

In the title compound, C(16)H(10)ClFN(2), the dihedral angle between the indole ring system and the benzyl ring is 80.91 (5)°. The crystal packing features C-H⋯Cl, C-H⋯F and C-H⋯π inter-actions.

Entities:  

Year:  2011        PMID: 21754368      PMCID: PMC3089219          DOI: 10.1107/S1600536811011214

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound, see: Du et al. (2006 ▶). For its precursor, see: Jin et al. (2009 ▶). For related structures, see: Li & Huang (2009 ▶); Li et al. (2009 ▶, 2010a ▶,b ▶).

Experimental

Crystal data

C16H10ClFN2 M = 284.71 Orthorhombic, a = 7.4581 (9) Å b = 16.8480 (15) Å c = 21.356 (2) Å V = 2683.5 (5) Å3 Z = 8 Mo Kα radiation μ = 0.29 mm−1 T = 113 K 0.26 × 0.22 × 0.20 mm

Data collection

Rigaku Saturn724 CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2009 ▶) T min = 0.929, T max = 0.945 28426 measured reflections 3893 independent reflections 3219 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.113 S = 1.11 3893 reflections 182 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CrystalClear (Rigaku, 2009 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: CrystalStructure (Rigaku, 2009 ▶); software used to prepare material for publication: CrystalStructure. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811011214/hb5823sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811011214/hb5823Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H10ClFN2F(000) = 1168
Mr = 284.71Dx = 1.409 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71075 Å
Hall symbol: -P 2ac 2abCell parameters from 10281 reflections
a = 7.4581 (9) Åθ = 1.5–31.4°
b = 16.8480 (15) ŵ = 0.29 mm1
c = 21.356 (2) ÅT = 113 K
V = 2683.5 (5) Å3Prism, colorless
Z = 80.26 × 0.22 × 0.20 mm
Rigaku Saturn724 CCD diffractometer3893 independent reflections
Radiation source: rotating anode3219 reflections with I > 2σ(I)
multilayerRint = 0.034
Detector resolution: 14.222 pixels mm-1θmax = 30.0°, θmin = 1.9°
ω scansh = −10→9
Absorption correction: multi-scan (CrystalClear; Rigaku, 2009)k = −23→23
Tmin = 0.929, Tmax = 0.945l = −30→30
28426 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113H-atom parameters constrained
S = 1.11w = 1/[σ2(Fo2) + (0.0644P)2 + 0.1004P] where P = (Fo2 + 2Fc2)/3
3893 reflections(Δ/σ)max = 0.001
182 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.50520 (4)0.220294 (19)0.641958 (16)0.03226 (11)
F10.61121 (11)0.54670 (5)0.76153 (4)0.0480 (2)
N10.39260 (12)0.37712 (5)0.59488 (4)0.0236 (2)
N20.79477 (16)0.43384 (7)0.42798 (6)0.0420 (3)
C10.45553 (17)0.36559 (7)0.53489 (5)0.0258 (2)
C20.60108 (16)0.41469 (7)0.52619 (6)0.0271 (3)
C30.63160 (15)0.45816 (7)0.58328 (6)0.0265 (3)
C40.49938 (14)0.43272 (7)0.62558 (6)0.0237 (2)
C50.48747 (16)0.46061 (7)0.68659 (6)0.0280 (3)
H50.39860.44270.71510.034*
C60.61408 (17)0.51607 (7)0.70243 (6)0.0337 (3)
C70.74735 (17)0.54359 (8)0.66235 (7)0.0361 (3)
H70.83150.58190.67650.043*
C80.75667 (16)0.51503 (7)0.60210 (7)0.0318 (3)
H80.84600.53360.57400.038*
C90.36953 (19)0.30813 (8)0.49124 (6)0.0333 (3)
H9A0.38120.25430.50810.040*
H9B0.42860.31090.45030.040*
H9C0.24230.32130.48660.040*
C100.70533 (17)0.42350 (7)0.47083 (6)0.0317 (3)
C110.25337 (16)0.33290 (7)0.62467 (5)0.0223 (2)
C120.28935 (15)0.25756 (7)0.64802 (5)0.0230 (2)
C130.15588 (16)0.21330 (7)0.67690 (5)0.0271 (3)
H130.18000.16120.69180.032*
C14−0.01309 (16)0.24642 (8)0.68363 (6)0.0277 (3)
H14−0.10520.21690.70370.033*
C15−0.04958 (18)0.32238 (7)0.66141 (6)0.0295 (3)
H15−0.16580.34460.66640.035*
C160.08411 (16)0.36557 (7)0.63194 (6)0.0276 (3)
H160.05980.41750.61670.033*
U11U22U33U12U13U23
Cl10.02051 (19)0.02941 (18)0.0468 (2)0.00492 (11)0.00001 (12)0.00824 (12)
F10.0450 (5)0.0454 (5)0.0535 (5)−0.0100 (4)−0.0018 (4)−0.0201 (4)
N10.0198 (5)0.0213 (4)0.0298 (5)−0.0031 (4)0.0030 (4)0.0022 (4)
N20.0363 (7)0.0436 (7)0.0461 (6)0.0006 (5)0.0128 (5)0.0089 (5)
C10.0240 (6)0.0243 (5)0.0290 (5)0.0016 (5)0.0019 (5)0.0054 (4)
C20.0218 (6)0.0250 (5)0.0344 (6)0.0014 (4)0.0040 (5)0.0079 (5)
C30.0199 (6)0.0210 (5)0.0385 (6)0.0020 (4)0.0007 (5)0.0081 (4)
C40.0178 (6)0.0181 (5)0.0353 (6)0.0001 (4)−0.0013 (4)0.0036 (4)
C50.0234 (6)0.0230 (6)0.0376 (6)−0.0001 (4)0.0013 (5)0.0006 (5)
C60.0311 (7)0.0253 (6)0.0446 (7)0.0007 (5)−0.0046 (6)−0.0057 (5)
C70.0267 (7)0.0220 (6)0.0597 (8)−0.0050 (5)−0.0061 (6)0.0016 (6)
C80.0199 (6)0.0225 (6)0.0528 (7)−0.0007 (4)0.0011 (6)0.0100 (5)
C90.0349 (7)0.0345 (7)0.0304 (6)−0.0037 (6)0.0011 (5)0.0007 (5)
C100.0259 (7)0.0291 (6)0.0402 (6)0.0026 (5)0.0047 (5)0.0088 (5)
C110.0194 (6)0.0216 (5)0.0259 (5)−0.0029 (4)0.0004 (4)0.0022 (4)
C120.0188 (6)0.0235 (5)0.0267 (5)0.0008 (4)−0.0021 (4)0.0014 (4)
C130.0263 (6)0.0255 (5)0.0295 (5)−0.0022 (5)−0.0015 (5)0.0070 (4)
C140.0230 (6)0.0324 (6)0.0275 (5)−0.0069 (5)0.0020 (5)0.0031 (5)
C150.0199 (6)0.0318 (6)0.0369 (6)0.0006 (5)0.0032 (5)−0.0002 (5)
C160.0229 (6)0.0241 (6)0.0358 (6)0.0015 (5)0.0009 (5)0.0041 (5)
Cl1—C121.7328 (12)C7—C81.375 (2)
F1—C61.3636 (15)C7—H70.9500
N1—C11.3780 (15)C8—H80.9500
N1—C41.3934 (14)C9—H9A0.9800
N1—C111.4276 (14)C9—H9B0.9800
N2—C101.1457 (16)C9—H9C0.9800
C1—C21.3775 (16)C11—C161.3857 (16)
C1—C91.4892 (17)C11—C121.3900 (15)
C2—C101.4227 (17)C12—C131.3883 (16)
C2—C31.4404 (18)C13—C141.3857 (17)
C3—C81.3963 (17)C13—H130.9500
C3—C41.4045 (16)C14—C151.3918 (18)
C4—C51.3879 (18)C14—H140.9500
C5—C61.3708 (17)C15—C161.3855 (17)
C5—H50.9500C15—H150.9500
C6—C71.3914 (19)C16—H160.9500
C1—N1—C4109.73 (9)C3—C8—H8120.8
C1—N1—C11126.05 (10)C1—C9—H9A109.5
C4—N1—C11123.83 (9)C1—C9—H9B109.5
C2—C1—N1108.01 (10)H9A—C9—H9B109.5
C2—C1—C9130.19 (11)C1—C9—H9C109.5
N1—C1—C9121.80 (11)H9A—C9—H9C109.5
C1—C2—C10127.27 (12)H9B—C9—H9C109.5
C1—C2—C3108.40 (10)N2—C10—C2176.12 (15)
C10—C2—C3124.33 (11)C16—C11—C12119.89 (10)
C8—C3—C4119.56 (12)C16—C11—N1120.35 (10)
C8—C3—C2134.28 (11)C12—C11—N1119.73 (10)
C4—C3—C2106.16 (10)C13—C12—C11120.76 (11)
C5—C4—N1129.26 (11)C13—C12—Cl1120.31 (9)
C5—C4—C3123.06 (11)C11—C12—Cl1118.91 (9)
N1—C4—C3107.68 (11)C14—C13—C12118.81 (11)
C6—C5—C4114.73 (11)C14—C13—H13120.6
C6—C5—H5122.6C12—C13—H13120.6
C4—C5—H5122.6C13—C14—C15120.85 (11)
F1—C6—C5118.39 (12)C13—C14—H14119.6
F1—C6—C7117.04 (11)C15—C14—H14119.6
C5—C6—C7124.57 (13)C16—C15—C14119.80 (12)
C8—C7—C6119.68 (12)C16—C15—H15120.1
C8—C7—H7120.2C14—C15—H15120.1
C6—C7—H7120.2C15—C16—C11119.86 (11)
C7—C8—C3118.39 (12)C15—C16—H16120.1
C7—C8—H8120.8C11—C16—H16120.1
C4—N1—C1—C2−1.08 (13)C4—C5—C6—C7−0.48 (18)
C11—N1—C1—C2−174.11 (10)F1—C6—C7—C8−179.81 (11)
C4—N1—C1—C9178.91 (11)C5—C6—C7—C80.4 (2)
C11—N1—C1—C95.89 (17)C6—C7—C8—C3−0.63 (18)
N1—C1—C2—C10−178.61 (11)C4—C3—C8—C70.91 (17)
C9—C1—C2—C101.4 (2)C2—C3—C8—C7−178.87 (13)
N1—C1—C2—C30.59 (13)C1—C2—C10—N2177 (100)
C9—C1—C2—C3−179.40 (12)C3—C2—C10—N2−2(2)
C1—C2—C3—C8179.90 (13)C1—N1—C11—C16−104.36 (13)
C10—C2—C3—C8−0.9 (2)C4—N1—C11—C1683.56 (14)
C1—C2—C3—C40.10 (13)C1—N1—C11—C1277.42 (15)
C10—C2—C3—C4179.33 (11)C4—N1—C11—C12−94.66 (13)
C1—N1—C4—C5−178.37 (12)C16—C11—C12—C132.09 (17)
C11—N1—C4—C5−5.16 (18)N1—C11—C12—C13−179.69 (10)
C1—N1—C4—C31.15 (13)C16—C11—C12—Cl1−176.62 (9)
C11—N1—C4—C3174.36 (10)N1—C11—C12—Cl11.61 (15)
C8—C3—C4—C5−1.03 (17)C11—C12—C13—C14−1.76 (17)
C2—C3—C4—C5178.81 (11)Cl1—C12—C13—C14176.93 (9)
C8—C3—C4—N1179.41 (10)C12—C13—C14—C150.59 (18)
C2—C3—C4—N1−0.75 (12)C13—C14—C15—C160.24 (19)
N1—C4—C5—C6−179.77 (11)C14—C15—C16—C110.07 (19)
C3—C4—C5—C60.78 (17)C12—C11—C16—C15−1.22 (17)
C4—C5—C6—F1179.77 (11)N1—C11—C16—C15−179.44 (11)
Cg1 is the centroid of the C3–C8 benzene ring.
D—H···AD—HH···AD···AD—H···A
C7—H7···F1i0.952.543.1638 (16)123
C7—H7···Cl1ii0.952.733.5296 (14)142
C15—H15···Cg1iii0.952.923.7246 (14)143
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C3–C8 benzene ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7⋯F1i0.952.543.1638 (16)123
C7—H7⋯Cl1ii0.952.733.5296 (14)142
C15—H15⋯Cg1iii0.952.923.7246 (14)143

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis of N-substituted indole derivatives via PIFA-mediated intramolecular cyclization.

Authors:  Yunfei Du; Renhe Liu; Gregory Linn; Kang Zhao
Journal:  Org Lett       Date:  2006-12-21       Impact factor: 6.005

3.  1,3-Dimethyl-1H-indole-2-carbonitrile.

Authors:  Jiang-Sheng Li; Peng-Mian Huang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-04

4.  1-Meth-oxy-2-methyl-1H-benzo[f]indole-3-carbonitrile.

Authors:  Jiang-Sheng Li; Qi-Xi He; Peng-Yu Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-09

5.  (Z)-Ethyl 2,4-diphenyl-3-(propyl-amino)-but-2-enoate.

Authors:  Huimin Jin; Peifan Li; Bin Liu; Xiaoqing Cheng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-08

6.  Ethyl 2-benzyl-1-propyl-1H-indole-3-carboxyl-ate.

Authors:  Peifan Li; Wenjie Wang; Caiyun Li; Xiaoxia Bian
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-14
  6 in total
  5 in total

1.  1-(4-Meth-oxy-phen-yl)-2-methyl-1H-indole-3-carbonitrile.

Authors:  Qiao Yan; Xiuxiang Qi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-11

2.  2-Methyl-1-phenyl-1H-indole-3-carbo-nitrile.

Authors:  Kun Yang; Pei-Fan Li; Yan Liu; Zhi-Zhong Fang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-08

3.  2-Benzyl-6-chloro-1-(4-methyl-phen-yl)-1H-indole-3-carbonitrile.

Authors:  Qiao Yan; Xiuxiang Qi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-23

4.  6-Meth-oxy-2-methyl-1-phenyl-1H-indole-3-carbonitrile.

Authors:  Qiao Yan; Xiuxiang Qi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-30

5.  1-(4-Bromo-phen-yl)-2-methyl-1H-indole-3-carbonitrile.

Authors:  Qiao Yan; Xiuxiang Qi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27
  5 in total

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