Literature DB >> 21754311

Diaqua-(1,4,8,11-tetra-aza-cyclo-tetra-decane-κN,N,N,N)copper(II) didodeca-noate dihydrate.

Nur Syamimi Ahmad Tajidi1, Norbani Abdullah, Zainudin Arifin.   

Abstract

The title compound, [Cu(C(10)H(24)N(4))(H(2)O)(2)][CH(3)(CH(2))(10)CO(2)](2)·2H(2)O, consists of one cationic copper(II) complex, two dodeca-noate anions and two water solvent mol-ecules. The Cu(II) atom is located on an inversion center and is chelated by the four aza N atoms of the neutral 1,4,8,11-tetra-aza-cyclo-tetra-decane (cyclam) ligand and by two water mol-ecules in axial positions, giving an octa-hedral coordination geometry, distorted as a consequence of the Jahn-Teller effect. The uncoordinated water mol-ecules link the complex cations and the dodeca-noate counter-ions through O-H⋯O hydrogen bonding, forming a layer structure parallel to (001). Inter-molecular N-H⋯O inter-actions also occur.

Entities:  

Year:  2011        PMID: 21754311      PMCID: PMC3089101          DOI: 10.1107/S1600536811012773

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the complexation of cyclam with transition metals, see: Ahmad Tajidi et al. (2010a ▶,b ▶,c ▶,d ▶); Lindoy et al. (2003 ▶); Holanda et al. (2007 ▶); Sreedaran et al. (2008 ▶); Zgolli et al. (2010 ▶).

Experimental

Crystal data

[Cu(C10H24N4)(H2O)2](C12H23O2)2·2H2O M = 734.54 Triclinic, a = 6.9972 (4) Å b = 8.8164 (5) Å c = 17.1495 (10) Å α = 96.218 (3)° β = 99.137 (3)° γ = 98.329 (3)° V = 1024.13 (10) Å3 Z = 1 Mo Kα radiation μ = 0.58 mm−1 T = 150 K 0.41 × 0.41 × 0.08 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1997 ▶) T min = 0.796, T max = 0.955 7085 measured reflections 4623 independent reflections 4138 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.129 S = 1.07 4623 reflections 215 parameters H-atom parameters constrained Δρmax = 0.54 e Å−3 Δρmin = −0.52 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811012773/dn2672sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811012773/dn2672Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C10H24N4)(H2O)2](C12H23O2)2·2H2OZ = 1
Mr = 734.54F(000) = 403
Triclinic, P1Dx = 1.191 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.9972 (4) ÅCell parameters from 2586 reflections
b = 8.8164 (5) Åθ = 2.8–27.6°
c = 17.1495 (10) ŵ = 0.58 mm1
α = 96.218 (3)°T = 150 K
β = 99.137 (3)°Plate, violet
γ = 98.329 (3)°0.41 × 0.41 × 0.08 mm
V = 1024.13 (10) Å3
Bruker SMART CCD area-detector diffractometer4623 independent reflections
Radiation source: fine-focus sealed tube4138 reflections with I > 2σ(I)
graphiteRint = 0.045
φ and ω scansθmax = 27.6°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008)h = −9→8
Tmin = 0.796, Tmax = 0.955k = −11→11
7085 measured reflectionsl = 0→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0591P)2 + 0.109P] where P = (Fo2 + 2Fc2)/3
4623 reflections(Δ/σ)max = 0.001
215 parametersΔρmax = 0.54 e Å3
0 restraintsΔρmin = −0.52 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu11.00000.00001.00000.01254 (12)
O2W0.6641 (2)0.00995 (16)0.93529 (9)0.0230 (3)
H2WA0.5631−0.06370.91100.034*
H2WB0.60860.09540.93190.034*
N11.1080 (2)0.18383 (18)0.95170 (10)0.0151 (3)
H11.24390.19130.96170.018*
N20.9722 (2)0.15474 (18)1.09264 (9)0.0159 (3)
H20.84160.16861.08530.019*
C11.1016 (3)0.0404 (3)0.81813 (12)0.0234 (5)
H1A1.08550.05410.76100.028*
H1B1.24160.03520.83670.028*
C21.0491 (3)0.1814 (2)0.86470 (12)0.0210 (4)
H2A1.11570.27670.84840.025*
H2B0.90570.17990.85180.025*
C31.0621 (3)0.3232 (2)0.99684 (13)0.0203 (4)
H3A0.92480.33560.97780.024*
H3B1.15010.41660.98880.024*
C41.0903 (3)0.3035 (2)1.08367 (13)0.0207 (4)
H4A1.23080.30371.10430.025*
H4B1.04780.39021.11450.025*
C51.0207 (3)0.1110 (3)1.17381 (12)0.0221 (4)
H5A0.99750.19341.21350.027*
H5B1.16150.10191.18510.027*
O10.3901 (2)0.76965 (15)0.84556 (8)0.0201 (3)
O20.3977 (3)0.54859 (17)0.89662 (9)0.0277 (4)
C61.5268 (4)0.8928 (3)0.31756 (16)0.0379 (6)
H6A1.60200.97530.35850.057*
H6B1.53570.92240.26460.057*
H6C1.58040.79700.32290.057*
C71.3129 (3)0.8673 (3)0.32783 (13)0.0302 (5)
H7A1.25900.96360.32040.036*
H7B1.23800.78520.28560.036*
C81.2814 (3)0.8219 (3)0.40846 (12)0.0216 (4)
H8A1.36010.90200.45090.026*
H8B1.33010.72330.41510.026*
C91.0669 (3)0.8029 (3)0.41888 (12)0.0217 (4)
H9A1.01940.90240.41360.026*
H9B0.98790.72500.37550.026*
C101.0328 (3)0.7534 (3)0.49849 (12)0.0227 (4)
H10A1.11540.82930.54200.027*
H10B1.07550.65200.50300.027*
C110.8192 (3)0.7402 (3)0.50970 (12)0.0223 (4)
H11A0.73620.66710.46520.027*
H11B0.77790.84260.50690.027*
C120.7825 (3)0.6855 (3)0.58845 (13)0.0241 (5)
H12A0.82020.58190.59070.029*
H12B0.86760.75720.63300.029*
C130.5699 (3)0.6768 (3)0.59969 (12)0.0225 (4)
H13A0.48460.60990.55340.027*
H13B0.53480.78170.60020.027*
C140.5274 (3)0.6143 (2)0.67581 (12)0.0214 (4)
H14A0.61370.68020.72220.026*
H14B0.55980.50860.67500.026*
C150.3140 (3)0.6090 (2)0.68655 (12)0.0202 (4)
H15A0.22700.55190.63790.024*
H15B0.28530.71600.69280.024*
C160.2673 (3)0.5319 (2)0.75860 (11)0.0192 (4)
H16A0.31170.43020.75550.023*
H16B0.12310.51280.75540.023*
C170.3612 (3)0.6252 (2)0.83941 (11)0.0154 (4)
O1W0.5329 (2)0.29510 (16)0.95510 (9)0.0208 (3)
H1WA0.55540.33371.00700.031*
H1WB0.49650.36790.92550.031*
U11U22U33U12U13U23
Cu10.01428 (19)0.01012 (17)0.01465 (18)0.00220 (12)0.00653 (13)0.00193 (12)
O2W0.0123 (7)0.0189 (7)0.0358 (9)0.0048 (6)0.0002 (6)−0.0017 (6)
N10.0121 (8)0.0136 (8)0.0210 (8)0.0032 (6)0.0051 (6)0.0044 (6)
N20.0122 (8)0.0170 (8)0.0185 (8)0.0028 (6)0.0044 (6)−0.0010 (6)
C10.0183 (11)0.0389 (12)0.0173 (10)0.0080 (9)0.0088 (8)0.0097 (9)
C20.0174 (10)0.0254 (10)0.0231 (10)0.0038 (8)0.0059 (8)0.0122 (8)
C30.0161 (10)0.0101 (8)0.0367 (12)0.0022 (7)0.0100 (9)0.0036 (8)
C40.0175 (10)0.0136 (9)0.0298 (11)−0.0002 (8)0.0080 (8)−0.0042 (8)
C50.0207 (11)0.0306 (11)0.0149 (9)0.0069 (9)0.0037 (8)−0.0024 (8)
O10.0231 (8)0.0157 (7)0.0213 (7)0.0048 (6)0.0033 (6)0.0001 (5)
O20.0426 (10)0.0209 (8)0.0188 (7)0.0039 (7)0.0029 (7)0.0052 (6)
C60.0286 (14)0.0546 (17)0.0364 (14)0.0053 (12)0.0196 (11)0.0141 (12)
C70.0229 (12)0.0478 (14)0.0213 (11)0.0013 (10)0.0098 (9)0.0090 (10)
C80.0182 (11)0.0290 (11)0.0185 (10)0.0018 (8)0.0077 (8)0.0037 (8)
C90.0189 (11)0.0281 (11)0.0170 (10)−0.0017 (8)0.0059 (8)0.0020 (8)
C100.0204 (11)0.0292 (11)0.0196 (10)0.0018 (9)0.0086 (8)0.0030 (8)
C110.0203 (11)0.0272 (11)0.0191 (10)−0.0008 (8)0.0089 (8)0.0000 (8)
C120.0216 (11)0.0313 (12)0.0215 (11)0.0041 (9)0.0100 (9)0.0044 (9)
C130.0225 (11)0.0275 (11)0.0190 (10)0.0017 (9)0.0104 (8)0.0025 (8)
C140.0201 (11)0.0271 (11)0.0182 (10)0.0040 (8)0.0072 (8)0.0028 (8)
C150.0214 (11)0.0253 (10)0.0137 (9)0.0019 (8)0.0065 (8)−0.0002 (8)
C160.0220 (11)0.0189 (10)0.0160 (9)−0.0008 (8)0.0063 (8)0.0006 (7)
C170.0127 (9)0.0180 (9)0.0178 (9)0.0046 (7)0.0076 (7)0.0019 (7)
O1W0.0201 (8)0.0195 (7)0.0234 (7)0.0054 (6)0.0033 (6)0.0025 (6)
Cu1—N1i2.0048 (16)C7—C81.521 (3)
Cu1—N12.0048 (16)C7—H7A0.9900
Cu1—N2i2.0319 (15)C7—H7B0.9900
Cu1—N22.0319 (15)C8—C91.527 (3)
O2W—H2WA0.8998C8—H8A0.9900
O2W—H2WB0.8994C8—H8B0.9900
N1—C21.481 (2)C9—C101.521 (3)
N1—C31.483 (2)C9—H9A0.9900
N1—H10.9300C9—H9B0.9900
N2—C41.482 (3)C10—C111.527 (3)
N2—C51.485 (2)C10—H10A0.9900
N2—H20.9300C10—H10B0.9900
C1—C5i1.510 (3)C11—C121.529 (3)
C1—C21.526 (3)C11—H11A0.9900
C1—H1A0.9900C11—H11B0.9900
C1—H1B0.9900C12—C131.523 (3)
C2—H2A0.9900C12—H12A0.9900
C2—H2B0.9900C12—H12B0.9900
C3—C41.503 (3)C13—C141.526 (3)
C3—H3A0.9900C13—H13A0.9900
C3—H3B0.9900C13—H13B0.9900
C4—H4A0.9900C14—C151.528 (3)
C4—H4B0.9900C14—H14A0.9900
C5—C1i1.510 (3)C14—H14B0.9900
C5—H5A0.9900C15—C161.530 (3)
C5—H5B0.9900C15—H15A0.9900
O1—C171.250 (2)C15—H15B0.9900
O2—C171.264 (2)C16—C171.529 (3)
C6—C71.522 (3)C16—H16A0.9900
C6—H6A0.9800C16—H16B0.9900
C6—H6B0.9800O1W—H1WA0.8986
C6—H6C0.9800O1W—H1WB0.9006
N1i—Cu1—N1180.0H7A—C7—H7B107.6
N1i—Cu1—N2i86.18 (7)C7—C8—C9113.37 (18)
N1—Cu1—N2i93.82 (7)C7—C8—H8A108.9
N1i—Cu1—N293.82 (7)C9—C8—H8A108.9
N1—Cu1—N286.18 (7)C7—C8—H8B108.9
N2i—Cu1—N2180.000 (1)C9—C8—H8B108.9
H2WA—O2W—H2WB100.8H8A—C8—H8B107.7
C2—N1—C3111.39 (15)C10—C9—C8113.87 (17)
C2—N1—Cu1117.57 (13)C10—C9—H9A108.8
C3—N1—Cu1107.35 (12)C8—C9—H9A108.8
C2—N1—H1106.6C10—C9—H9B108.8
C3—N1—H1106.6C8—C9—H9B108.8
Cu1—N1—H1106.6H9A—C9—H9B107.7
C4—N2—C5112.33 (16)C9—C10—C11113.57 (17)
C4—N2—Cu1106.22 (12)C9—C10—H10A108.9
C5—N2—Cu1116.78 (12)C11—C10—H10A108.9
C4—N2—H2107.0C9—C10—H10B108.9
C5—N2—H2107.0C11—C10—H10B108.9
Cu1—N2—H2107.0H10A—C10—H10B107.7
C5i—C1—C2114.02 (17)C10—C11—C12113.90 (18)
C5i—C1—H1A108.7C10—C11—H11A108.8
C2—C1—H1A108.7C12—C11—H11A108.8
C5i—C1—H1B108.7C10—C11—H11B108.8
C2—C1—H1B108.7C12—C11—H11B108.8
H1A—C1—H1B107.6H11A—C11—H11B107.7
N1—C2—C1111.41 (15)C13—C12—C11113.29 (18)
N1—C2—H2A109.3C13—C12—H12A108.9
C1—C2—H2A109.3C11—C12—H12A108.9
N1—C2—H2B109.3C13—C12—H12B108.9
C1—C2—H2B109.3C11—C12—H12B108.9
H2A—C2—H2B108.0H12A—C12—H12B107.7
N1—C3—C4108.34 (15)C12—C13—C14114.26 (18)
N1—C3—H3A110.0C12—C13—H13A108.7
C4—C3—H3A110.0C14—C13—H13A108.7
N1—C3—H3B110.0C12—C13—H13B108.7
C4—C3—H3B110.0C14—C13—H13B108.7
H3A—C3—H3B108.4H13A—C13—H13B107.6
N2—C4—C3108.71 (16)C13—C14—C15113.37 (17)
N2—C4—H4A109.9C13—C14—H14A108.9
C3—C4—H4A109.9C15—C14—H14A108.9
N2—C4—H4B109.9C13—C14—H14B108.9
C3—C4—H4B109.9C15—C14—H14B108.9
H4A—C4—H4B108.3H14A—C14—H14B107.7
N2—C5—C1i111.54 (17)C14—C15—C16113.17 (17)
N2—C5—H5A109.3C14—C15—H15A108.9
C1i—C5—H5A109.3C16—C15—H15A108.9
N2—C5—H5B109.3C14—C15—H15B108.9
C1i—C5—H5B109.3C16—C15—H15B108.9
H5A—C5—H5B108.0H15A—C15—H15B107.8
C7—C6—H6A109.5C15—C16—C17114.68 (17)
C7—C6—H6B109.5C15—C16—H16A108.6
H6A—C6—H6B109.5C17—C16—H16A108.6
C7—C6—H6C109.5C15—C16—H16B108.6
H6A—C6—H6C109.5C17—C16—H16B108.6
H6B—C6—H6C109.5H16A—C16—H16B107.6
C8—C7—C6114.1 (2)O1—C17—O2124.53 (19)
C8—C7—H7A108.7O1—C17—C16118.96 (17)
C6—C7—H7A108.7O2—C17—C16116.46 (17)
C8—C7—H7B108.7H1WA—O1W—H1WB109.5
C6—C7—H7B108.7
C3—N1—C2—C1178.39 (16)C7—C8—C9—C10178.49 (19)
Cu1—N1—C2—C1−57.1 (2)C8—C9—C10—C11177.93 (18)
C5i—C1—C2—N170.0 (2)C9—C10—C11—C12178.14 (18)
C2—N1—C3—C4169.59 (16)C10—C11—C12—C13178.57 (17)
Cu1—N1—C3—C439.57 (18)C11—C12—C13—C14176.93 (18)
C5—N2—C4—C3168.83 (15)C12—C13—C14—C15179.07 (18)
Cu1—N2—C4—C340.02 (17)C13—C14—C15—C16174.42 (17)
N1—C3—C4—N2−53.9 (2)C14—C15—C16—C1770.0 (2)
C4—N2—C5—C1i179.78 (15)C15—C16—C17—O130.9 (3)
Cu1—N2—C5—C1i−57.2 (2)C15—C16—C17—O2−151.66 (19)
C6—C7—C8—C9177.8 (2)
D—H···AD—HH···AD···AD—H···A
O1W—H1WB···O20.901.912.774 (2)160.
O1W—H1WA···O2ii0.901.812.694 (2)168.
O2W—H2WB···O1W0.901.932.8037 (19)164.
O2W—H2WA···O1iii0.901.892.777 (2)168.
N2—H2···O1ii0.932.253.030 (2)141.
N1—H1···O1Wiv0.932.122.982 (2)153.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1WB⋯O20.901.912.774 (2)160
O1W—H1WA⋯O2i0.901.812.694 (2)168
O2W—H2WB⋯O1W0.901.932.8037 (19)164
O2W—H2WA⋯O1ii0.901.892.777 (2)168
N2—H2⋯O1i0.932.253.030 (2)141
N1—H1⋯O1Wiii0.932.122.982 (2)153

Symmetry codes: (i) ; (ii) ; (iii) .

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