Literature DB >> 21588132

Diaqua-(1,4,8,11-tetra-aza-cyclo-tetra-decane-κN,N,N,N)copper(II) dihepta-noate dihydrate.

Nur Syamimi Ahmad Tajidi1, Norbani Abdullah, Zainudin Arifin, Kong Wai Tan, Seik Weng Ng.   

Abstract

The Cu(II) atom in the title salt, [Cu(C(10)H(24)N(4))(H(2)O)(2)][CH(3)(CH(2))(5)CO(2)](2)·2H(2)O, is chelated by the four N atoms of the 1,4,8,11-tetra-aza-cyclo-tetra-decane (cyclam) ligand and is coordinated by two water mol-ecules in a tetra-gonally Jahn-Teller-distorted octa-hedral geometry. The Cu(II) atom lies on a center of inversion. The cations, anions and uncoordinated water mol-ecules are linked by N-H⋯O and O-H⋯O hydrogen bonds, forming a layer structure parallel to (100). The alkyl chain of the anion is disordered over two positions in a 0.82 (1):0.18 (1) ratio.

Entities:  

Year:  2010        PMID: 21588132      PMCID: PMC3007509          DOI: 10.1107/S1600536810025687

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related diaqua­(1,4,8,11-tetra­aza­cyclo­tetra­deca­ne)copper carboxyl­ates, see: Lindoy et al. (2003 ▶); Hunter et al. (2005 ▶).

Experimental

Crystal data

[Cu(C10H24N4)(H2O)2](C7H13O2)2·2H2O M = 594.28 Monoclinic, a = 11.7257 (6) Å b = 9.9426 (5) Å c = 13.4573 (7) Å β = 103.1363 (7)° V = 1527.85 (14) Å3 Z = 2 Mo Kα radiation μ = 0.76 mm−1 T = 100 K 0.35 × 0.25 × 0.15 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.776, T max = 0.894 14358 measured reflections 3506 independent reflections 3140 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.079 S = 1.06 3506 reflections 212 parameters 12 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.81 e Å−3 Δρmin = −0.31 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810025687/bt5285sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810025687/bt5285Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C10H24N4)(H2O)2](C7H13O2)2·2H2OF(000) = 646
Mr = 594.28Dx = 1.292 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8003 reflections
a = 11.7257 (6) Åθ = 2.6–28.3°
b = 9.9426 (5) ŵ = 0.76 mm1
c = 13.4573 (7) ÅT = 100 K
β = 103.1363 (7)°Block, purple
V = 1527.85 (14) Å30.35 × 0.25 × 0.15 mm
Z = 2
Bruker SMART APEX diffractometer3506 independent reflections
Radiation source: fine-focus sealed tube3140 reflections with I > 2σ(I)
graphiteRint = 0.022
ω scansθmax = 27.5°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −15→15
Tmin = 0.776, Tmax = 0.894k = −12→12
14358 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.079H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0406P)2 + 0.7328P] where P = (Fo2 + 2Fc2)/3
3506 reflections(Δ/σ)max = 0.001
212 parametersΔρmax = 0.81 e Å3
12 restraintsΔρmin = −0.31 e Å3
xyzUiso*/UeqOcc. (<1)
Cu10.50000.50000.50000.01672 (8)
O10.37230 (9)0.57029 (10)0.88828 (7)0.0254 (2)
O20.35970 (10)0.48007 (10)0.73553 (8)0.0260 (2)
O1W0.35364 (10)0.35174 (11)0.55509 (8)0.0262 (2)
H110.3445 (19)0.378 (2)0.6109 (10)0.047 (6)*
H120.3586 (17)0.2684 (10)0.5589 (15)0.035 (5)*
O2W0.38768 (10)0.07550 (11)0.57173 (8)0.0272 (2)
H210.372 (2)0.031 (2)0.5184 (11)0.045 (6)*
H220.4606 (9)0.070 (2)0.5895 (16)0.046 (6)*
N10.62254 (10)0.35391 (11)0.53855 (9)0.0196 (2)
H10.5925 (14)0.2927 (14)0.5699 (12)0.025 (4)*
N20.54008 (11)0.58808 (11)0.63930 (8)0.0196 (2)
H20.5052 (14)0.5435 (16)0.6783 (11)0.022 (4)*
C10.73634 (13)0.39280 (15)0.60465 (11)0.0246 (3)
H1A0.77600.45710.56760.030*
H1B0.78660.31200.62050.030*
C20.72217 (14)0.45693 (16)0.70380 (11)0.0267 (3)
H2A0.80030.46450.75070.032*
H2B0.67400.39670.73630.032*
C30.66565 (13)0.59536 (15)0.69082 (10)0.0242 (3)
H3A0.67380.63760.75870.029*
H3B0.70700.65280.65020.029*
C40.48410 (14)0.72262 (14)0.62714 (11)0.0244 (3)
H4A0.53140.78600.59640.029*
H4B0.47810.75840.69440.029*
C50.36356 (13)0.70700 (14)0.55851 (10)0.0231 (3)
H5A0.31460.64840.59140.028*
H5B0.32490.79580.54530.028*
C60.31775 (13)0.50923 (13)0.80991 (11)0.0203 (3)
C70.18993 (17)0.4746 (2)0.81018 (17)0.0289 (5)0.822 (3)
H7A0.18560.37880.82880.035*0.822 (3)
H7B0.16550.52910.86340.035*0.822 (3)
C80.10391 (17)0.49936 (19)0.70811 (18)0.0318 (5)0.822 (3)
H8A0.13080.44890.65420.038*0.822 (3)
H8B0.02630.46330.71190.038*0.822 (3)
C90.09044 (18)0.6455 (2)0.67784 (15)0.0299 (5)0.822 (3)
H9A0.16910.68400.68120.036*0.822 (3)
H9B0.05560.69420.72790.036*0.822 (3)
C100.01464 (18)0.6690 (2)0.57143 (18)0.0357 (5)0.822 (3)
H10A0.04330.61060.52270.043*0.822 (3)
H10B−0.06650.64110.57090.043*0.822 (3)
C110.01253 (18)0.8120 (3)0.53458 (18)0.0402 (6)0.822 (3)
H11A0.09280.83840.53060.048*0.822 (3)
H11B−0.01180.87140.58510.048*0.822 (3)
C12−0.0696 (3)0.8339 (5)0.4308 (2)0.0541 (9)0.822 (3)
H12A−0.06710.92860.41120.081*0.822 (3)
H12B−0.14970.81010.43440.081*0.822 (3)
H12C−0.04500.77710.37990.081*0.822 (3)
C7'0.2043 (7)0.4295 (9)0.7967 (10)0.0289 (5)0.18
H7'10.19810.38680.86170.035*0.178 (3)
H7'20.19950.35890.74410.035*0.178 (3)
C8'0.1079 (7)0.5358 (9)0.7631 (8)0.0318 (5)0.18
H8'10.03020.49280.75480.038*0.178 (3)
H8'20.11520.60570.81650.038*0.178 (3)
C9'0.1167 (9)0.6010 (11)0.6632 (7)0.0299 (5)0.18
H9'10.12380.52970.61370.036*0.178 (3)
H9'20.18890.65610.67500.036*0.178 (3)
C10'0.0116 (8)0.6905 (12)0.6166 (8)0.0357 (5)0.18
H10C−0.06190.63840.60880.043*0.178 (3)
H10D0.00800.76760.66240.043*0.178 (3)
C11'0.0239 (9)0.7419 (15)0.5123 (8)0.0402 (6)0.18
H11C0.03630.66460.46960.048*0.178 (3)
H11D0.09340.80100.52150.048*0.178 (3)
C12'−0.0852 (14)0.820 (3)0.4572 (14)0.0541 (9)0.18
H12D−0.07330.85390.39180.081*0.178 (3)
H12E−0.09830.89640.49960.081*0.178 (3)
H12F−0.15360.76080.44500.081*0.178 (3)
U11U22U33U12U13U23
Cu10.02403 (13)0.01387 (12)0.01321 (12)−0.00126 (8)0.00619 (9)−0.00200 (7)
O10.0350 (6)0.0224 (5)0.0193 (5)0.0001 (4)0.0071 (4)−0.0030 (4)
O20.0375 (6)0.0262 (5)0.0170 (5)−0.0036 (4)0.0114 (4)−0.0006 (4)
O1W0.0414 (6)0.0197 (5)0.0214 (5)−0.0041 (4)0.0155 (5)−0.0017 (4)
O2W0.0334 (6)0.0254 (5)0.0243 (5)0.0020 (4)0.0098 (5)−0.0037 (4)
N10.0278 (6)0.0160 (5)0.0168 (5)−0.0017 (4)0.0087 (5)0.0008 (4)
N20.0286 (6)0.0164 (5)0.0154 (5)−0.0036 (4)0.0086 (5)−0.0012 (4)
C10.0262 (7)0.0244 (7)0.0236 (7)0.0000 (6)0.0062 (6)0.0026 (5)
C20.0281 (7)0.0309 (7)0.0195 (7)−0.0030 (6)0.0023 (6)0.0020 (6)
C30.0296 (7)0.0261 (7)0.0167 (6)−0.0071 (6)0.0048 (5)−0.0043 (5)
C40.0397 (8)0.0157 (6)0.0200 (7)−0.0013 (6)0.0114 (6)−0.0040 (5)
C50.0348 (8)0.0175 (6)0.0201 (7)0.0028 (5)0.0129 (6)0.0003 (5)
C60.0256 (7)0.0181 (6)0.0180 (6)−0.0008 (5)0.0067 (5)0.0044 (5)
C70.0285 (9)0.0325 (12)0.0286 (11)−0.0059 (9)0.0126 (7)0.0039 (9)
C80.0227 (9)0.0334 (11)0.0399 (13)−0.0077 (7)0.0084 (9)−0.0050 (8)
C90.0235 (10)0.0395 (13)0.0263 (10)−0.0052 (8)0.0048 (7)−0.0021 (8)
C100.0227 (8)0.0492 (12)0.0325 (12)−0.0052 (8)0.0008 (9)−0.0009 (10)
C110.0225 (9)0.0668 (17)0.0313 (11)0.0054 (11)0.0064 (8)0.0068 (11)
C120.0371 (14)0.0795 (19)0.039 (2)0.0062 (13)−0.0047 (11)0.0093 (15)
C7'0.0285 (9)0.0325 (12)0.0286 (11)−0.0059 (9)0.0126 (7)0.0039 (9)
C8'0.0227 (9)0.0334 (11)0.0399 (13)−0.0077 (7)0.0084 (9)−0.0050 (8)
C9'0.0235 (10)0.0395 (13)0.0263 (10)−0.0052 (8)0.0048 (7)−0.0021 (8)
C10'0.0227 (8)0.0492 (12)0.0325 (12)−0.0052 (8)0.0008 (9)−0.0009 (10)
C11'0.0225 (9)0.0668 (17)0.0313 (11)0.0054 (11)0.0064 (8)0.0068 (11)
C12'0.0371 (14)0.0795 (19)0.039 (2)0.0062 (13)−0.0047 (11)0.0093 (15)
Cu1—N12.026 (1)C7—H7B0.9900
Cu1—N22.025 (1)C8—C91.507 (3)
Cu1—N2i2.025 (1)C8—H8A0.9900
Cu1—N1i2.026 (1)C8—H8B0.9900
Cu1—O1w2.499 (1)C9—C101.522 (3)
O1—C61.2584 (18)C9—H9A0.9900
O2—C61.2456 (18)C9—H9B0.9900
O1W—H110.826 (10)C10—C111.504 (3)
O1W—H120.831 (9)C10—H10A0.9900
O2W—H210.829 (10)C10—H10B0.9900
O2W—H220.836 (10)C11—C121.521 (3)
N1—C11.4771 (19)C11—H11A0.9900
N1—C5i1.4818 (17)C11—H11B0.9900
N1—H10.860 (9)C12—H12A0.9800
N2—C31.4798 (18)C12—H12B0.9800
N2—C41.4827 (18)C12—H12C0.9800
N2—H20.858 (9)C7'—C8'1.539 (9)
C1—C21.521 (2)C7'—H7'10.9900
C1—H1A0.9900C7'—H7'20.9900
C1—H1B0.9900C8'—C9'1.516 (8)
C2—C31.520 (2)C8'—H8'10.9900
C2—H2A0.9900C8'—H8'20.9900
C2—H2B0.9900C9'—C10'1.535 (9)
C3—H3A0.9900C9'—H9'10.9900
C3—H3B0.9900C9'—H9'20.9900
C4—C51.511 (2)C10'—C11'1.531 (9)
C4—H4A0.9900C10'—H10C0.9900
C4—H4B0.9900C10'—H10D0.9900
C5—N1i1.4818 (17)C11'—C12'1.538 (9)
C5—H5A0.9900C11'—H11C0.9900
C5—H5B0.9900C11'—H11D0.9900
C6—C7'1.524 (8)C12'—H12D0.9800
C6—C71.539 (2)C12'—H12E0.9800
C7—C81.528 (3)C12'—H12F0.9800
C7—H7A0.9900
N2—Cu1—N2i180.0H7A—C7—H7B107.7
N2—Cu1—N1i85.92 (5)C9—C8—C7113.91 (17)
N2i—Cu1—N1i94.08 (5)C9—C8—H8A108.8
N2—Cu1—N194.08 (5)C7—C8—H8A108.8
N2i—Cu1—N185.92 (5)C9—C8—H8B108.8
N1i—Cu1—N1180.0C7—C8—H8B108.8
N2—Cu1—O1W90.63 (4)H8A—C8—H8B107.7
N2i—Cu1—O1W89.37 (4)C8—C9—C10113.94 (18)
N1i—Cu1—O1W90.23 (4)C8—C9—H9A108.8
N1—Cu1—O1W89.77 (4)C10—C9—H9A108.8
Cu1—O1W—H11108.7 (16)C8—C9—H9B108.8
Cu1—O1W—H12124.3 (14)C10—C9—H9B108.8
H11—O1W—H12106 (2)H9A—C9—H9B107.7
H21—O2W—H22103 (2)C11—C10—C9114.72 (19)
C1—N1—C5i111.88 (11)C11—C10—H10A108.6
C1—N1—Cu1117.23 (9)C9—C10—H10A108.6
C5i—N1—Cu1106.32 (8)C11—C10—H10B108.6
C1—N1—H1107.7 (12)C9—C10—H10B108.6
C5i—N1—H1106.4 (12)H10A—C10—H10B107.6
Cu1—N1—H1106.7 (12)C10—C11—C12113.4 (3)
C3—N2—C4112.08 (11)C10—C11—H11A108.9
C3—N2—Cu1116.85 (9)C12—C11—H11A108.9
C4—N2—Cu1106.51 (8)C10—C11—H11B108.9
C3—N2—H2107.5 (12)C12—C11—H11B108.9
C4—N2—H2105.9 (12)H11A—C11—H11B107.7
Cu1—N2—H2107.4 (12)C11—C12—H12A109.5
N1—C1—C2111.97 (12)C11—C12—H12B109.5
N1—C1—H1A109.2H12A—C12—H12B109.5
C2—C1—H1A109.2C11—C12—H12C109.5
N1—C1—H1B109.2H12A—C12—H12C109.5
C2—C1—H1B109.2H12B—C12—H12C109.5
H1A—C1—H1B107.9C6—C7'—C8'103.9 (6)
C1—C2—C3114.22 (12)C6—C7'—H7'1111.0
C1—C2—H2A108.7C8'—C7'—H7'1111.0
C3—C2—H2A108.7C6—C7'—H7'2111.0
C1—C2—H2B108.7C8'—C7'—H7'2111.0
C3—C2—H2B108.7H7'1—C7'—H7'2109.0
H2A—C2—H2B107.6C9'—C8'—C7'111.2 (8)
N2—C3—C2111.77 (11)C9'—C8'—H8'1109.4
N2—C3—H3A109.3C7'—C8'—H8'1109.4
C2—C3—H3A109.3C9'—C8'—H8'2109.4
N2—C3—H3B109.3C7'—C8'—H8'2109.4
C2—C3—H3B109.3H8'1—C8'—H8'2108.0
H3A—C3—H3B107.9C8'—C9'—C10'113.6 (8)
N2—C4—C5107.69 (11)C8'—C9'—H9'1108.9
N2—C4—H4A110.2C10'—C9'—H9'1108.9
C5—C4—H4A110.2C8'—C9'—H9'2108.9
N2—C4—H4B110.2C10'—C9'—H9'2108.9
C5—C4—H4B110.2H9'1—C9'—H9'2107.7
H4A—C4—H4B108.5C11'—C10'—C9'109.5 (8)
N1i—C5—C4107.82 (11)C11'—C10'—H10C109.8
N1i—C5—H5A110.1C9'—C10'—H10C109.8
C4—C5—H5A110.1C11'—C10'—H10D109.8
N1i—C5—H5B110.1C9'—C10'—H10D109.8
C4—C5—H5B110.1H10C—C10'—H10D108.2
H5A—C5—H5B108.5C10'—C11'—C12'111.7 (10)
O2—C6—O1124.58 (14)C10'—C11'—H11C109.3
O2—C6—C7'106.2 (5)C12'—C11'—H11C109.3
O1—C6—C7'127.8 (5)C10'—C11'—H11D109.3
O2—C6—C7120.84 (14)C12'—C11'—H11D109.3
O1—C6—C7114.56 (14)H11C—C11'—H11D107.9
C7'—C6—C719.8 (4)C11'—C12'—H12D109.5
C8—C7—C6113.97 (16)C11'—C12'—H12E109.5
C8—C7—H7A108.8H12D—C12'—H12E109.5
C6—C7—H7A108.8C11'—C12'—H12F109.5
C8—C7—H7B108.8H12D—C12'—H12F109.5
C6—C7—H7B108.8H12E—C12'—H12F109.5
N2—Cu1—N1—C1−38.82 (10)C3—N2—C4—C5170.38 (11)
N2i—Cu1—N1—C1141.18 (10)Cu1—N2—C4—C541.42 (12)
O1W—Cu1—N1—C1−129.43 (9)N2—C4—C5—N1i−56.62 (14)
N2—Cu1—N1—C5i−164.78 (9)O2—C6—C7—C8−40.9 (2)
N2i—Cu1—N1—C5i15.22 (9)O1—C6—C7—C8137.52 (16)
O1W—Cu1—N1—C5i104.60 (9)C7'—C6—C7—C8−86.5 (15)
N1i—Cu1—N2—C3−140.76 (10)C6—C7—C8—C9−66.1 (2)
N1—Cu1—N2—C339.24 (10)C7—C8—C9—C10174.03 (18)
O1W—Cu1—N2—C3129.05 (9)C8—C9—C10—C11−172.59 (19)
N1i—Cu1—N2—C4−14.63 (9)C9—C10—C11—C12−176.5 (2)
N1—Cu1—N2—C4165.37 (9)O2—C6—C7'—C8'−105.8 (7)
O1W—Cu1—N2—C4−104.81 (9)O1—C6—C7'—C8'87.6 (8)
C5i—N1—C1—C2179.31 (11)C7—C6—C7'—C8'34.5 (10)
Cu1—N1—C1—C256.13 (14)C6—C7'—C8'—C9'60.9 (11)
N1—C1—C2—C3−69.50 (16)C7'—C8'—C9'—C10'170.4 (9)
C4—N2—C3—C2179.52 (11)C8'—C9'—C10'—C11'−175.3 (10)
Cu1—N2—C3—C2−57.16 (13)C9'—C10'—C11'—C12'174.2 (15)
C1—C2—C3—N270.11 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1ii0.86 (1)2.30 (1)2.983 (2)137 (2)
N2—H2···O20.86 (1)2.12 (1)2.924 (2)156 (2)
O1w—H11···O20.83 (1)1.93 (1)2.730 (2)162 (2)
O1w—H12···O2w0.83 (1)1.95 (1)2.777 (2)174 (2)
O2w—H21···O1iii0.83 (1)2.02 (1)2.833 (2)166 (2)
O2w—H22···O1ii0.84 (1)1.91 (1)2.743 (2)171 (2)
Table 1

Selected bond lengths (Å)

Cu1—N12.026 (1)
Cu1—N22.025 (1)
Cu1—O1w2.499 (1)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.86 (1)2.30 (1)2.983 (2)137 (2)
N2—H2⋯O20.86 (1)2.12 (1)2.924 (2)156 (2)
O1w—H11⋯O20.83 (1)1.93 (1)2.730 (2)162 (2)
O1w—H12⋯O2w0.83 (1)1.95 (1)2.777 (2)174 (2)
O2w—H21⋯O1ii0.83 (1)2.02 (1)2.833 (2)166 (2)
O2w—H22⋯O1i0.84 (1)1.91 (1)2.743 (2)171 (2)

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Protein recognition of macrocycles: binding of anti-HIV metallocyclams to lysozyme.

Authors:  Tina M Hunter; Iain W McNae; Xiangyang Liang; Juraj Bella; Simon Parsons; Malcolm D Walkinshaw; Peter J Sadler
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-08       Impact factor: 11.205

  2 in total
  1 in total

1.  Diaqua-(1,4,8,11-tetra-aza-cyclo-tetra-decane-κN,N,N,N)copper(II) didodeca-noate dihydrate.

Authors:  Nur Syamimi Ahmad Tajidi; Norbani Abdullah; Zainudin Arifin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-13
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.