Literature DB >> 21754149

4-Benzyl-3-[(1-oxidoethylidene)amino]-1-phenyl-4,5-dihydro-1H-1,2,4-triazol-5-iminium.

Victor M Chernyshev, Anna G Mazharova, Victor B Rybakov.   

Abstract

The title compound, C(17)H(17)N(5)O, exists in the zwitterionic form with the <span class="Chemical">amide group deprotonated. The mean planes of the <class="Chemical">span class="Chemical">1,2,4-triazole and N-phenyl rings form a dihedral angle of 39.14 (8)°. The N atom of the amino group adopts a trigonal configuration. Inter-moleculat C-H⋯O and C-H⋯N hydrogen bonds occur. In the crystal, mol-ecules are linked into a two-dimensional network parallel to (10[Formula: see text]) by N-H⋯O and N-H⋯N hydrogen bonds. C-H⋯N contacts are also observed.

Entities:  

Year:  2011        PMID: 21754149      PMCID: PMC3100060          DOI: 10.1107/S1600536811006751

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the starting compound, <span class="Chemical">N-(5-amino-1-phenyl-1H-1,2,4-triazol-3-yl)acetamide, see: Chernyshev et al. (2005 ▶). For alkyl­ation and other reactions of related compounds with electrophiles, see: Chernyshev et al. (2008a ▶,b ▶). For crystal structures of 3(5)-acyl­amino-<class="Chemical">span class="Chemical">1,2,4-triazoles, see: Selby & Lepone (1984 ▶); Gyorgydeak et al. (1995 ▶); Chernyshev et al. (2006 ▶); Masiukiewicz et al. (2007 ▶); Miao et al. (2009 ▶). For crystal structures of 5-amino-1,2,4-triazolium salts, see: Darwich et al. (2008a ▶,b ▶); Klapotke & Sabate (2008 ▶); Tao et al. (2009 ▶); Chernyshev et al. (2010 ▶). For standard bond lengths, see: Allen et al. (1987 ▶). For the correlation of bond lengths with bond orders in sp 2-hybridized C and N atoms, see: Burke-Laing & Laing (1976 ▶).

Experimental

Crystal data

<span class="Chemical">C17H17N5O M = 307.36 Monoclinic, a = 10.262 (2) Å b = 15.240 (3) Å c = 10.967 (2) Å β = 113.86 (2)° V = 1568.6 (6) Å3 Z = 4 Ag Kα radiation λ = 0.56085 Å μ = 0.06 mm−1 T = 295 K 0.20 × 0.20 × 0.20 mm

Data collection

Enraf–Nonius CAD-4 diffractometer 3582 measured reflections 3412 independent reflections 2294 reflections with I > 2σ(I) R int = 0.068 1 standard reflections every 6 min intensity decay: 0%

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.160 S = 1.03 3412 reflections 218 parameters <span class="Disease">H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811006751/aa2002sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811006751/aa2002Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H17N5OF(000) = 648
Mr = 307.36Dx = 1.301 Mg m3
Monoclinic, P21/nMelting point = 472–473 K
Hall symbol: -P 2ynAg Kα radiation, λ = 0.56085 Å
a = 10.262 (2) ÅCell parameters from 25 reflections
b = 15.240 (3) Åθ = 13.2–14.4°
c = 10.967 (2) ŵ = 0.06 mm1
β = 113.86 (2)°T = 295 K
V = 1568.6 (6) Å3Prism, colourless
Z = 40.20 × 0.20 × 0.20 mm
Enraf–Nonius CAD-4 diffractometerRint = 0.068
Radiation source: fine-focus sealed tubeθmax = 21.0°, θmin = 1.8°
graphiteh = −13→11
Non–profiled ω scansk = 0→19
3582 measured reflectionsl = 0→13
3412 independent reflections1 standard reflections every 6 min
2294 reflections with I > 2σ(I) intensity decay: −1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.059H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.160w = 1/[σ2(Fo2) + (0.0799P)2 + 0.4611P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3412 reflectionsΔρmax = 0.30 e Å3
218 parametersΔρmin = −0.22 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.066 (6)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.86753 (18)0.33588 (11)0.43051 (16)0.0345 (4)
N20.96176 (18)0.26764 (11)0.49396 (16)0.0355 (4)
C30.9547 (2)0.21474 (13)0.39830 (19)0.0314 (5)
N40.85963 (17)0.24731 (11)0.27474 (15)0.0314 (4)
C50.8081 (2)0.32385 (13)0.29796 (19)0.0315 (5)
C60.8381 (2)0.21434 (14)0.14185 (19)0.0340 (5)
H6A0.74170.22800.07970.041*
H6B0.84810.15100.14590.041*
C70.9406 (2)0.25232 (14)0.0901 (2)0.0383 (5)
C81.0832 (3)0.2325 (2)0.1442 (3)0.0597 (7)
H81.11900.19480.21690.072*
C91.1747 (3)0.2673 (2)0.0931 (3)0.0688 (8)
H91.27110.25330.13220.083*
C101.1255 (4)0.3211 (2)−0.0126 (4)0.0812 (10)
H101.18680.3434−0.04840.097*
C110.9848 (5)0.3428 (3)−0.0668 (5)0.128 (2)
H110.94990.3807−0.13950.153*
C120.8939 (3)0.3090 (3)−0.0146 (4)0.0911 (12)
H120.79830.3252−0.05180.109*
N131.04305 (18)0.14482 (11)0.41734 (17)0.0371 (4)
C140.9911 (2)0.06725 (14)0.3633 (2)0.0393 (5)
O140.86200 (18)0.04827 (10)0.30395 (16)0.0492 (5)
C151.1022 (3)−0.00100 (17)0.3782 (3)0.0563 (7)
H15A1.0685−0.05750.39140.084*
H15B1.18850.01310.45360.084*
H15C1.1207−0.00220.29910.084*
C160.8529 (2)0.40728 (14)0.5074 (2)0.0381 (5)
C170.7220 (3)0.44477 (17)0.4786 (2)0.0520 (6)
H170.64110.42310.40950.062*
C180.7124 (4)0.5152 (2)0.5538 (3)0.0678 (8)
H180.62490.54240.53330.081*
C190.8311 (5)0.5452 (2)0.6586 (3)0.0751 (10)
H190.82380.59240.70920.090*
C200.9602 (4)0.50577 (19)0.6889 (3)0.0637 (8)
H201.03970.52560.76140.076*
C210.9741 (3)0.43706 (16)0.6133 (2)0.0474 (6)
H211.06240.41120.63270.057*
N510.7197 (2)0.37631 (13)0.2071 (2)0.0438 (5)
H51A0.695 (3)0.433 (2)0.223 (2)0.053 (7)*
H51B0.689 (3)0.361 (2)0.127 (3)0.070 (9)*
U11U22U33U12U13U23
N10.0351 (9)0.0355 (9)0.0252 (9)0.0034 (7)0.0041 (7)−0.0009 (7)
N20.0372 (10)0.0353 (10)0.0254 (8)0.0043 (7)0.0036 (7)0.0026 (7)
C30.0282 (10)0.0337 (10)0.0258 (10)−0.0020 (8)0.0040 (8)0.0037 (8)
N40.0315 (9)0.0324 (9)0.0220 (8)−0.0001 (7)0.0022 (7)0.0010 (7)
C50.0309 (10)0.0290 (10)0.0269 (10)−0.0015 (8)0.0036 (8)−0.0007 (8)
C60.0371 (11)0.0330 (11)0.0229 (9)−0.0005 (9)0.0029 (8)−0.0017 (8)
C70.0432 (12)0.0380 (11)0.0307 (11)−0.0021 (10)0.0119 (9)−0.0026 (9)
C80.0503 (16)0.0741 (19)0.0557 (16)0.0122 (13)0.0223 (13)0.0085 (14)
C90.0537 (17)0.083 (2)0.079 (2)−0.0007 (15)0.0357 (16)−0.0137 (18)
C100.082 (2)0.092 (2)0.088 (2)−0.021 (2)0.053 (2)0.001 (2)
C110.085 (3)0.190 (5)0.111 (3)0.003 (3)0.043 (2)0.089 (4)
C120.0585 (19)0.130 (3)0.080 (2)0.0083 (19)0.0224 (17)0.063 (2)
N130.0355 (9)0.0360 (10)0.0298 (9)0.0032 (8)0.0029 (7)0.0018 (8)
C140.0459 (13)0.0349 (11)0.0293 (11)0.0040 (10)0.0071 (9)0.0053 (9)
O140.0477 (10)0.0357 (8)0.0474 (10)−0.0052 (7)0.0019 (7)0.0030 (7)
C150.0608 (16)0.0463 (14)0.0544 (16)0.0123 (12)0.0158 (13)−0.0009 (12)
C160.0493 (13)0.0356 (11)0.0290 (11)−0.0031 (10)0.0154 (9)0.0011 (9)
C170.0600 (16)0.0531 (15)0.0425 (13)0.0068 (12)0.0202 (12)−0.0015 (11)
C180.096 (2)0.0560 (17)0.0662 (19)0.0191 (16)0.0479 (18)0.0045 (15)
C190.135 (3)0.0474 (16)0.0628 (19)−0.0084 (19)0.061 (2)−0.0137 (14)
C200.099 (2)0.0552 (16)0.0436 (15)−0.0323 (17)0.0357 (15)−0.0163 (12)
C210.0587 (15)0.0486 (13)0.0332 (12)−0.0147 (11)0.0167 (11)−0.0057 (10)
N510.0510 (12)0.0332 (10)0.0284 (10)0.0102 (9)−0.0033 (8)−0.0023 (8)
N4—C51.347 (3)C11—H110.9300
N4—C31.402 (2)C12—H120.9300
N4—C61.471 (3)N13—C141.333 (3)
C5—N511.313 (3)C14—O141.251 (3)
C5—N11.342 (2)C14—C151.503 (3)
N1—N21.399 (2)C15—H15A0.9600
N1—C161.422 (3)C15—H15B0.9600
N2—C31.302 (3)C15—H15C0.9600
C3—N131.359 (3)C16—C171.374 (3)
C6—C71.499 (3)C16—C211.390 (3)
C6—H6A0.9700C17—C181.382 (4)
C6—H6B0.9700C17—H170.9300
C7—C121.360 (4)C18—C191.371 (5)
C7—C81.371 (3)C18—H180.9300
C8—C91.379 (4)C19—C201.368 (5)
C8—H80.9300C19—H190.9300
C9—C101.341 (5)C20—C211.378 (4)
C9—H90.9300C20—H200.9300
C10—C111.361 (5)C21—H210.9300
C10—H100.9300N51—H51A0.94 (3)
C11—C121.378 (5)N51—H51B0.84 (3)
C5—N4—C3107.27 (16)C7—C12—C11121.5 (3)
C5—N4—C6124.75 (16)C7—C12—H12119.3
C3—N4—C6127.11 (17)C11—C12—H12119.3
N51—C5—N1127.6 (2)C14—N13—C3120.35 (18)
N51—C5—N4125.98 (19)O14—C14—N13125.8 (2)
N1—C5—N4106.38 (16)O14—C14—C15119.6 (2)
C5—N1—N2110.92 (16)N13—C14—C15114.6 (2)
C5—N1—C16129.54 (17)C14—C15—H15A109.5
N2—N1—C16119.44 (16)C14—C15—H15B109.5
C3—N2—N1104.94 (15)H15A—C15—H15B109.5
N2—C3—N13123.07 (17)C14—C15—H15C109.5
N2—C3—N4110.47 (17)H15A—C15—H15C109.5
N13—C3—N4125.89 (18)H15B—C15—H15C109.5
N4—C6—C7113.32 (17)C17—C16—C21121.2 (2)
N4—C6—H6A108.9C17—C16—N1120.7 (2)
C7—C6—H6A108.9C21—C16—N1118.2 (2)
N4—C6—H6B108.9C16—C17—C18119.0 (3)
C7—C6—H6B108.9C16—C17—H17120.5
H6A—C6—H6B107.7C18—C17—H17120.5
C12—C7—C8117.1 (2)C19—C18—C17120.3 (3)
C12—C7—C6120.2 (2)C19—C18—H18119.8
C8—C7—C6122.7 (2)C17—C18—H18119.8
C7—C8—C9121.5 (3)C20—C19—C18120.2 (3)
C7—C8—H8119.2C20—C19—H19119.9
C9—C8—H8119.2C18—C19—H19119.9
C10—C9—C8120.4 (3)C19—C20—C21120.9 (3)
C10—C9—H9119.8C19—C20—H20119.6
C8—C9—H9119.8C21—C20—H20119.6
C9—C10—C11119.3 (3)C20—C21—C16118.4 (3)
C9—C10—H10120.4C20—C21—H21120.8
C11—C10—H10120.4C16—C21—H21120.8
C10—C11—C12120.3 (3)C5—N51—H51A125.1 (15)
C10—C11—H11119.9C5—N51—H51B118 (2)
C12—C11—H11119.9H51A—N51—H51B116 (3)
C3—N4—C5—N51177.4 (2)C7—C8—C9—C10−0.7 (5)
C6—N4—C5—N517.4 (3)C8—C9—C10—C111.6 (6)
C3—N4—C5—N1−1.2 (2)C9—C10—C11—C12−0.8 (7)
C6—N4—C5—N1−171.22 (18)C8—C7—C12—C112.0 (6)
N51—C5—N1—N2−177.0 (2)C6—C7—C12—C11−178.0 (4)
N4—C5—N1—N21.6 (2)C10—C11—C12—C7−1.1 (8)
N51—C5—N1—C16−0.7 (4)N2—C3—N13—C14135.3 (2)
N4—C5—N1—C16177.9 (2)N4—C3—N13—C14−54.2 (3)
C5—N1—N2—C3−1.4 (2)C3—N13—C14—O14−7.3 (3)
C16—N1—N2—C3−178.07 (18)C3—N13—C14—C15172.8 (2)
N1—N2—C3—N13172.37 (18)C5—N1—C16—C1742.3 (3)
N1—N2—C3—N40.5 (2)N2—N1—C16—C17−141.7 (2)
C5—N4—C3—N20.4 (2)C5—N1—C16—C21−138.6 (2)
C6—N4—C3—N2170.09 (18)N2—N1—C16—C2137.4 (3)
C5—N4—C3—N13−171.11 (19)C21—C16—C17—C182.2 (4)
C6—N4—C3—N13−1.4 (3)N1—C16—C17—C18−178.7 (2)
C5—N4—C6—C782.4 (2)C16—C17—C18—C19−2.2 (4)
C3—N4—C6—C7−85.5 (2)C17—C18—C19—C200.4 (5)
N4—C6—C7—C12−110.7 (3)C18—C19—C20—C211.5 (4)
N4—C6—C7—C869.3 (3)C19—C20—C21—C16−1.5 (4)
C12—C7—C8—C9−1.1 (4)C17—C16—C21—C20−0.4 (3)
C6—C7—C8—C9178.9 (2)N1—C16—C21—C20−179.5 (2)
D—H···AD—HH···AD···AD—H···A
N51—H51A···O14i0.94 (3)1.83 (3)2.739 (3)161 (2)
N51—H51B···N13ii0.84 (3)2.18 (3)2.971 (3)157 (3)
C6—H6B···O140.972.303.045 (3)133
C8—H8···N130.932.723.454 (4)136
C17—H17···N510.932.753.146 (4)107
C12—H12···N13ii0.932.543.441 (4)162
BondUncorrectedLower boundUpper boundRiding motionNon–correlated motion
C6–C71.499 (3)1.4991.5831.5041.541
C7–C81.371 (3)1.3751.5171.3941.446
C7–C121.360 (4)1.3751.5751.4181.475
C8–C91.379 (4)1.3801.5731.3881.476
C9–C101.341 (5)1.3421.5391.3561.440
C10–C111.361 (5)1.3701.6791.4131.524
C11–C121.378 (5)1.3821.7731.4171.577
N13–C141.333 (3)1.3331.4491.3351.391
C14–O141.251 (3)1.2521.3931.2641.323
C14–C151.503 (3)1.5051.6361.5191.570
C16–C171.374 (3)1.3751.4931.3881.434
C16–C211.390 (3)1.3911.5191.4011.455
C17–C181.382 (4)1.3831.5731.3971.478
C18–C191.371 (5)1.3721.5381.3781.455
C19–C201.368 (5)1.3691.5001.3791.434
C20–C211.378 (4)1.3801.5491.3941.464
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N51—H51A⋯O14i0.94 (3)1.83 (3)2.739 (3)161 (2)
N51—H51B⋯N13ii0.84 (3)2.18 (3)2.971 (3)157 (3)
C6—H6B⋯O140.972.303.045 (3)133
C8—H8⋯N130.932.723.454 (4)136
C12—H12⋯N13ii0.932.543.441 (4)162

Symmetry codes: (i) ; (ii) .

  5 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  1,2,4-triazolium-cation-based energetic salts.

Authors:  Chaza Darwich; Thomas M Klapötke; Carles Miró Sabaté
Journal:  Chemistry       Date:  2008       Impact factor: 5.236

4.  N-(1H-1,2,4-Triazol-5-yl)pyridine-2-carboxamide.

Authors:  Jing Miao; Maomao Jia; Xianlin Liu; Wei Xiong; Zilu Chen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-17

5.  3,5-Diamino-1-phenyl-1,2,4-triazolium bromide.

Authors:  V M Chernyshev; A V Astakhov; V V Ivanov; Z A Starikova
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-16
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.