Literature DB >> 21578333

N-(1H-1,2,4-Triazol-5-yl)pyridine-2-carboxamide.

Jing Miao1, Maomao Jia, Xianlin Liu, Wei Xiong, Zilu Chen.   

Abstract

In the structure of the title compound, C(8)H(7)N(5)O, the pyridine ring and the imidazole ring are nearly coplanar, making a dihedral angle of 2.97 (15)°. An intra-molecular N-H⋯O hydrogen bond occurs. In the crystal mol-ecules are connected by inter-molecular hydrogen bonds and π-π stacking inter-actions between neighboring imidazole rings [centroid-centroid distance = 3.5842 (5) Å and off-set angle = 21.77°], leading to the formation of a two-dimensional supra-molecular sheet.

Entities:  

Year:  2009        PMID: 21578333      PMCID: PMC2970976          DOI: 10.1107/S1600536809041269

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For an alternative preparative method for the title compound, see: Browne & Polya (1968 ▶). For the potential bioinorganic applications of 1,2,4-triazole derivatives, see: Bohm & Karow (1981 ▶); Bahel et al. (1984 ▶).

Experimental

Crystal data

C8H7N5O M = 189.19 Monoclinic, a = 8.6906 (17) Å b = 5.2854 (10) Å c = 17.880 (4) Å β = 90.700 (3)° V = 821.2 (3) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 273 K 0.26 × 0.24 × 0.18 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.972, T max = 0.980 3938 measured reflections 1443 independent reflections 961 reflections with I > 2σ(I) R int = 0.095

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.106 S = 1.00 1443 reflections 128 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809041269/ez2185sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809041269/ez2185Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H7N5OF(000) = 392
Mr = 189.19Dx = 1.530 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1623 reflections
a = 8.6906 (17) Åθ = 3.0–28.0°
b = 5.2854 (10) ŵ = 0.11 mm1
c = 17.880 (4) ÅT = 273 K
β = 90.700 (3)°Block, colorless
V = 821.2 (3) Å30.26 × 0.24 × 0.18 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer1443 independent reflections
Radiation source: fine-focus sealed tube961 reflections with I > 2σ(I)
graphiteRint = 0.095
φ and ω scansθmax = 25.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 1998)h = −8→10
Tmin = 0.972, Tmax = 0.980k = −6→5
3938 measured reflectionsl = −21→21
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.046H-atom parameters constrained
wR(F2) = 0.106w = 1/[σ2(Fo2) + (0.0259P)2] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
1443 reflectionsΔρmax = 0.17 e Å3
128 parametersΔρmin = −0.16 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.024 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.6956 (2)0.7443 (3)0.35815 (9)0.0470 (5)
N20.77449 (17)0.4023 (3)0.46730 (8)0.0410 (5)
H210.84060.51810.45390.061*
C50.5911 (2)0.5707 (4)0.37611 (10)0.0389 (5)
C60.6318 (2)0.3877 (4)0.43697 (10)0.0391 (5)
N40.74724 (18)0.0445 (3)0.54961 (8)0.0438 (5)
H410.6579−0.01300.53700.066*
N50.83128 (19)−0.0771 (3)0.60411 (9)0.0481 (5)
N30.96153 (18)0.2595 (3)0.55752 (9)0.0454 (5)
C30.4141 (3)0.7178 (5)0.28387 (12)0.0529 (7)
H30.31980.70830.25890.063*
C40.4492 (2)0.5512 (4)0.34098 (11)0.0478 (6)
H40.37890.42860.35550.057*
C10.6574 (3)0.9042 (4)0.30331 (12)0.0547 (6)
H10.72811.02840.29050.066*
C70.8255 (2)0.2395 (4)0.52329 (11)0.0380 (5)
C20.5196 (3)0.8965 (5)0.26449 (12)0.0534 (7)
H20.49901.01040.22600.064*
C80.9568 (2)0.0599 (4)0.60561 (11)0.0490 (6)
H81.03850.02290.63790.059*
O10.53795 (16)0.2298 (3)0.45747 (8)0.0520 (5)
U11U22U33U12U13U23
N10.0448 (11)0.0521 (13)0.0439 (10)−0.0024 (9)−0.0056 (8)0.0052 (10)
N20.0348 (10)0.0466 (12)0.0414 (10)−0.0067 (8)−0.0051 (8)0.0074 (9)
C50.0382 (12)0.0424 (13)0.0360 (11)0.0004 (10)−0.0015 (9)−0.0021 (10)
C60.0346 (11)0.0436 (14)0.0390 (12)−0.0060 (10)−0.0031 (9)−0.0033 (10)
N40.0371 (10)0.0510 (13)0.0431 (10)−0.0086 (9)−0.0042 (8)0.0068 (9)
N50.0419 (10)0.0541 (13)0.0481 (10)−0.0055 (10)−0.0077 (8)0.0132 (9)
N30.0391 (10)0.0500 (12)0.0469 (10)−0.0077 (9)−0.0092 (8)0.0089 (9)
C30.0490 (14)0.0611 (18)0.0482 (13)0.0082 (12)−0.0150 (11)−0.0033 (12)
C40.0438 (13)0.0529 (15)0.0465 (13)−0.0028 (11)−0.0065 (10)−0.0015 (11)
C10.0580 (15)0.0517 (16)0.0542 (14)−0.0055 (12)−0.0027 (11)0.0127 (12)
C70.0320 (11)0.0441 (14)0.0379 (11)−0.0058 (10)−0.0014 (9)−0.0008 (10)
C20.0620 (16)0.0542 (17)0.0439 (12)0.0088 (13)−0.0074 (11)0.0059 (12)
C80.0438 (13)0.0582 (16)0.0447 (13)−0.0034 (12)−0.0128 (10)0.0109 (12)
O10.0390 (9)0.0594 (11)0.0574 (10)−0.0141 (8)−0.0100 (7)0.0117 (8)
N1—C51.333 (2)N5—C81.309 (3)
N1—C11.333 (3)N3—C71.329 (2)
N2—C61.349 (2)N3—C81.362 (2)
N2—C71.388 (2)C3—C21.364 (3)
N2—H210.8751C3—C41.379 (3)
C5—C41.381 (3)C3—H30.9300
C5—C61.495 (3)C4—H40.9300
C6—O11.226 (2)C1—C21.377 (3)
N4—C71.324 (2)C1—H10.9300
N4—N51.371 (2)C2—H20.9300
N4—H410.8612C8—H80.9300
C5—N1—C1116.71 (19)C4—C3—H3120.4
C6—N2—C7122.55 (17)C3—C4—C5118.5 (2)
C6—N2—H21122.2C3—C4—H4120.7
C7—N2—H21115.2C5—C4—H4120.7
N1—C5—C4123.29 (19)N1—C1—C2124.0 (2)
N1—C5—C6117.68 (18)N1—C1—H1118.0
C4—C5—C6119.02 (19)C2—C1—H1118.0
O1—C6—N2122.01 (19)N4—C7—N3110.85 (18)
O1—C6—C5120.34 (18)N4—C7—N2125.30 (17)
N2—C6—C5117.65 (18)N3—C7—N2123.85 (18)
C7—N4—N5110.26 (16)C3—C2—C1118.4 (2)
C7—N4—H41130.3C3—C2—H2120.8
N5—N4—H41119.4C1—C2—H2120.8
C8—N5—N4101.06 (17)N5—C8—N3116.56 (18)
C7—N3—C8101.28 (17)N5—C8—H8121.7
C2—C3—C4119.1 (2)N3—C8—H8121.7
C2—C3—H3120.4
C1—N1—C5—C40.0 (3)C5—N1—C1—C2−1.0 (3)
C1—N1—C5—C6179.44 (19)N5—N4—C7—N3−0.1 (2)
C7—N2—C6—O10.4 (3)N5—N4—C7—N2179.57 (17)
C7—N2—C6—C5−178.98 (17)C8—N3—C7—N40.3 (2)
N1—C5—C6—O1177.46 (18)C8—N3—C7—N2−179.40 (19)
C4—C5—C6—O1−3.1 (3)C6—N2—C7—N44.8 (3)
N1—C5—C6—N2−3.1 (3)C6—N2—C7—N3−175.51 (19)
C4—C5—C6—N2176.30 (17)C4—C3—C2—C1−0.4 (3)
C7—N4—N5—C8−0.1 (2)N1—C1—C2—C31.2 (4)
C2—C3—C4—C5−0.5 (3)N4—N5—C8—N30.3 (2)
N1—C5—C4—C30.7 (3)C7—N3—C8—N5−0.4 (2)
C6—C5—C4—C3−178.68 (19)
D—H···AD—HH···AD···AD—H···A
N2—H21···N3i0.882.092.946 (2)164
N4—H41···O1ii0.862.062.873 (2)158
N4—H41···O10.862.172.629 (2)113
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H21⋯N3i0.882.092.946 (2)164
N4—H41⋯O1ii0.862.062.873 (2)158
N4—H41⋯O10.862.172.629 (2)113

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  [Biologically active triazoles].

Authors:  R Böhm; C Karow
Journal:  Pharmazie       Date:  1981-04       Impact factor: 1.267

  2 in total
  1 in total

1.  4-Benzyl-3-[(1-oxidoethylidene)amino]-1-phenyl-4,5-dihydro-1H-1,2,4-triazol-5-iminium.

Authors:  Victor M Chernyshev; Anna G Mazharova; Victor B Rybakov
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-12
  1 in total

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