Literature DB >> 21587873

3,5-Diamino-1-phenyl-1,2,4-triazolium bromide.

V M Chernyshev, A V Astakhov, V V Ivanov, Z A Starikova.   

Abstract

The title salt, C(8)H(10)N(5) (+)·Br(-), crystallizes with two independent structural units in the asymmetric unit. The two independent cations have different conformations, the triazole and phenyl rings forming dihedral angles of 32.57 (6) and 52.27 (7)°. In both cations, the amino groups are planar (the sum of the angles at the N atom of each amino group is 360°) and conjugated with the triazole ring. Inter-molecular N-H⋯N and N-H⋯Br hydrogen bonds consolidate the crystal packing.

Entities:  

Year:  2010        PMID: 21587873      PMCID: PMC3006877          DOI: 10.1107/S1600536810021318

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of protonated C-amino-1,2,4-triazoles, see: Reck et al. (1982 ▶); Lynch et al. (1998 ▶, 1999 ▶); Baouab et al. (2000 ▶); Bichay et al. (2006 ▶); Guerfel et al. (2007 ▶); Matulková et al. (2007 ▶). For the crystal structure of 3,5-diamino-1,2,4-triazole, see: Starova et al. (1980 ▶). For the theoretical investigation of the protonation of C-amino-1,2,4-triazoles, see: Anders et al. (1997 ▶). For the reactions of 1-substituted 3,5-diamino-1,2,4-triazoles with electrophilic reagents, see: Steck et al. (1958 ▶); Chernyshev et al. (2005 ▶, 2008 ▶). For the use of 1-substituted 3,5-diamino-1,2,4-triazoles as building blocks in the synthesis of various derivatives of 1,2,4-triazole and fused heterocyclic systems, see: Dunstan et al. (1998 ▶); Chernyshev et al. (2006 ▶, 2009 ▶, 2010 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C8H10N5Br M = 256.12 Monoclinic, a = 13.752 (2) Å b = 7.1172 (13) Å c = 20.394 (4) Å β = 95.519 (3)° V = 1986.7 (6) Å3 Z = 8 Mo Kα radiation μ = 4.11 mm−1 T = 100 K 0.55 × 0.40 × 0.30 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.211, T max = 0.372 19484 measured reflections 4314 independent reflections 3808 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.071 S = 1.00 4314 reflections 253 parameters H-atom parameters constrained Δρmax = 0.63 e Å−3 Δρmin = −0.52 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2005 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶), publCIF (Westrip, 2010 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810021318/cv2726sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810021318/cv2726Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H10N5+·BrF(000) = 1024
Mr = 256.12Dx = 1.713 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 568 reflections
a = 13.752 (2) Åθ = 3–26°
b = 7.1172 (13) ŵ = 4.11 mm1
c = 20.394 (4) ÅT = 100 K
β = 95.519 (3)°Plate, colourless
V = 1986.7 (6) Å30.55 × 0.40 × 0.30 mm
Z = 8
Bruker APEXII CCD area-detector diffractometer4314 independent reflections
Radiation source: fine-focus sealed tube3808 reflections with I > 2σ(I)
graphiteRint = 0.033
ω scansθmax = 27.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −17→17
Tmin = 0.211, Tmax = 0.372k = −9→9
19484 measured reflectionsl = −26→26
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: difference Fourier map
wR(F2) = 0.071H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0375P)2 + 2.843P] where P = (Fo2 + 2Fc2)/3
4314 reflections(Δ/σ)max = 0.001
253 parametersΔρmax = 0.63 e Å3
0 restraintsΔρmin = −0.52 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.469797 (17)0.08357 (3)0.629576 (11)0.01647 (7)
Br20.183938 (18)0.24667 (3)0.647848 (11)0.01826 (8)
N1'0.28802 (13)0.3108 (3)0.40098 (9)0.0106 (4)
N10.33201 (14)0.2566 (3)0.88547 (9)0.0105 (4)
C50.28387 (16)0.2595 (3)0.82544 (11)0.0109 (4)
C3'0.17571 (16)0.3375 (3)0.46553 (11)0.0109 (4)
N20.43255 (13)0.2227 (3)0.88259 (9)0.0110 (4)
N2'0.18826 (13)0.3526 (3)0.40275 (9)0.0110 (4)
C30.44019 (16)0.2009 (3)0.81952 (11)0.0112 (4)
C5'0.33040 (16)0.2696 (3)0.46079 (11)0.0108 (4)
N30.52349 (14)0.1671 (3)0.79256 (10)0.0155 (4)
H3A0.57760.15810.81720.019*
H3B0.52280.15440.75060.019*
C60.29678 (17)0.2856 (3)0.94788 (11)0.0112 (4)
C6'0.33268 (16)0.3120 (3)0.34068 (11)0.0108 (4)
N3'0.09158 (14)0.3663 (3)0.49263 (10)0.0139 (4)
H3'A0.03970.39780.46820.017*
H3'B0.08970.35330.53440.017*
C7'0.41759 (17)0.4159 (3)0.33736 (12)0.0141 (4)
H7'0.44250.48950.37270.017*
N4'0.26139 (14)0.2888 (3)0.50273 (9)0.0106 (4)
H4'0.26910.27370.54470.013*
N40.35127 (14)0.2222 (3)0.78272 (9)0.0110 (4)
H40.34060.21340.74060.013*
C70.20341 (17)0.2241 (3)0.95945 (12)0.0144 (5)
H70.16300.16630.92620.017*
C8'0.46478 (17)0.4074 (3)0.27991 (12)0.0168 (5)
H8'0.52250.47380.27710.020*
N50.18967 (14)0.2885 (3)0.80841 (10)0.0139 (4)
H5A0.15080.30910.83820.017*
H5B0.16740.28690.76750.017*
N5'0.42386 (14)0.2226 (3)0.47651 (10)0.0140 (4)
H5'A0.46340.21660.44640.017*
H5'B0.44450.19830.51680.017*
C80.17218 (18)0.2512 (4)1.02182 (12)0.0189 (5)
H80.10980.21341.03000.023*
C9'0.42605 (18)0.3005 (4)0.22696 (12)0.0184 (5)
H9'0.45850.29320.18910.022*
C90.2331 (2)0.3340 (4)1.07174 (12)0.0203 (5)
H90.21160.35141.11320.024*
C10'0.33847 (19)0.2038 (3)0.23038 (12)0.0177 (5)
H10'0.31160.13620.19400.021*
C100.32641 (19)0.3909 (3)1.05977 (12)0.0184 (5)
H100.36770.44451.09350.022*
C110.35831 (17)0.3681 (3)0.99777 (11)0.0142 (5)
H110.42050.40780.98970.017*
C11'0.29117 (17)0.2074 (3)0.28729 (11)0.0135 (4)
H11'0.23320.14180.28990.016*
U11U22U33U12U13U23
Br10.01631 (12)0.02134 (13)0.01186 (12)−0.00248 (9)0.00199 (8)0.00081 (9)
Br20.02081 (13)0.02303 (14)0.01122 (12)0.00564 (10)0.00289 (9)−0.00001 (9)
N1'0.0066 (9)0.0153 (9)0.0099 (9)−0.0003 (7)0.0012 (7)0.0007 (7)
N10.0081 (9)0.0145 (9)0.0089 (9)0.0022 (7)0.0008 (7)−0.0006 (7)
C50.0112 (10)0.0094 (10)0.0122 (10)−0.0009 (8)0.0013 (8)−0.0006 (8)
C3'0.0107 (10)0.0097 (10)0.0123 (10)−0.0016 (8)0.0008 (8)−0.0007 (8)
N20.0074 (9)0.0150 (9)0.0108 (9)0.0020 (7)0.0020 (7)−0.0005 (7)
N2'0.0064 (9)0.0146 (9)0.0122 (9)0.0006 (7)0.0016 (7)0.0012 (7)
C30.0129 (11)0.0092 (10)0.0115 (10)0.0011 (8)0.0014 (8)0.0000 (8)
C5'0.0110 (10)0.0106 (10)0.0109 (10)−0.0014 (8)0.0017 (8)−0.0001 (8)
N30.0117 (9)0.0250 (11)0.0100 (9)0.0050 (8)0.0028 (7)−0.0012 (8)
C60.0143 (11)0.0106 (10)0.0090 (10)0.0053 (8)0.0027 (8)0.0015 (8)
C6'0.0117 (10)0.0117 (10)0.0092 (10)0.0030 (8)0.0023 (8)0.0026 (8)
N3'0.0105 (9)0.0209 (10)0.0106 (9)0.0019 (8)0.0027 (7)−0.0005 (8)
C7'0.0134 (11)0.0144 (11)0.0146 (11)0.0005 (9)0.0014 (8)0.0017 (9)
N4'0.0111 (9)0.0139 (9)0.0069 (9)−0.0009 (7)0.0012 (7)−0.0004 (7)
N40.0114 (9)0.0141 (9)0.0076 (9)0.0014 (7)0.0008 (7)−0.0005 (7)
C70.0120 (11)0.0169 (11)0.0141 (11)0.0040 (9)0.0008 (9)0.0038 (9)
C8'0.0119 (11)0.0193 (12)0.0197 (12)0.0013 (9)0.0045 (9)0.0094 (10)
N50.0102 (9)0.0214 (10)0.0097 (9)0.0024 (8)−0.0009 (7)−0.0026 (8)
N5'0.0099 (9)0.0212 (10)0.0108 (9)0.0015 (8)−0.0002 (7)0.0021 (8)
C80.0160 (12)0.0233 (13)0.0187 (12)0.0094 (10)0.0079 (9)0.0094 (10)
C9'0.0202 (12)0.0225 (12)0.0137 (11)0.0086 (10)0.0084 (9)0.0073 (10)
C90.0297 (14)0.0207 (12)0.0112 (11)0.0139 (11)0.0065 (10)0.0030 (9)
C10'0.0222 (12)0.0182 (12)0.0126 (11)0.0070 (10)0.0004 (9)−0.0006 (9)
C100.0268 (13)0.0161 (12)0.0118 (11)0.0074 (10)−0.0010 (9)−0.0016 (9)
C110.0158 (11)0.0121 (10)0.0143 (11)0.0039 (9)−0.0003 (9)0.0000 (9)
C11'0.0138 (11)0.0137 (11)0.0130 (11)0.0009 (9)0.0002 (9)0.0011 (9)
N1'—C5'1.333 (3)C7'—C8'1.394 (3)
N1'—N2'1.408 (2)C7'—H7'0.9300
N1'—C6'1.426 (3)N4'—H4'0.8600
N1—C51.335 (3)N4—H40.8600
N1—N21.410 (3)C7—C81.395 (3)
N1—C61.420 (3)C7—H70.9300
C5—N51.325 (3)C8'—C9'1.385 (4)
C5—N41.358 (3)C8'—H8'0.9300
C3'—N2'1.313 (3)N5—H5A0.8600
C3'—N3'1.345 (3)N5—H5B0.8600
C3'—N4'1.383 (3)N5'—H5'A0.8600
N2—C31.310 (3)N5'—H5'B0.8600
C3—N31.339 (3)C8—C91.386 (4)
C3—N41.380 (3)C8—H80.9300
C5'—N5'1.337 (3)C9'—C10'1.395 (4)
C5'—N4'1.344 (3)C9'—H9'0.9300
N3—H3A0.8600C9—C101.389 (4)
N3—H3B0.8600C9—H90.9300
C6—C111.389 (3)C10'—C11'1.384 (3)
C6—C71.398 (3)C10'—H10'0.9300
C6'—C7'1.389 (3)C10—C111.387 (3)
C6'—C11'1.395 (3)C10—H100.9300
N3'—H3'A0.8600C11—H110.9300
N3'—H3'B0.8600C11'—H11'0.9300
C5'—N1'—N2'111.37 (18)C3'—N4'—H4'126.5
C5'—N1'—C6'127.14 (19)C5—N4—C3107.23 (18)
N2'—N1'—C6'121.48 (17)C5—N4—H4126.4
C5—N1—N2111.48 (18)C3—N4—H4126.4
C5—N1—C6129.6 (2)C8—C7—C6118.6 (2)
N2—N1—C6118.86 (18)C8—C7—H7120.7
N5—C5—N1129.0 (2)C6—C7—H7120.7
N5—C5—N4125.0 (2)C9'—C8'—C7'120.2 (2)
N1—C5—N4106.04 (19)C9'—C8'—H8'119.9
N2'—C3'—N3'126.0 (2)C7'—C8'—H8'119.9
N2'—C3'—N4'111.76 (19)C5—N5—H5A120.0
N3'—C3'—N4'122.3 (2)C5—N5—H5B120.0
C3—N2—N1103.46 (17)H5A—N5—H5B120.0
C3'—N2'—N1'103.15 (17)C5'—N5'—H5'A120.0
N2—C3—N3125.2 (2)C5'—N5'—H5'B120.0
N2—C3—N4111.75 (19)H5'A—N5'—H5'B120.0
N3—C3—N4123.0 (2)C9—C8—C7120.8 (2)
N1'—C5'—N5'126.9 (2)C9—C8—H8119.6
N1'—C5'—N4'106.66 (19)C7—C8—H8119.6
N5'—C5'—N4'126.5 (2)C8'—C9'—C10'120.1 (2)
C3—N3—H3A120.0C8'—C9'—H9'120.0
C3—N3—H3B120.0C10'—C9'—H9'120.0
H3A—N3—H3B120.0C8—C9—C10119.9 (2)
C11—C6—C7120.9 (2)C8—C9—H9120.1
C11—C6—N1118.8 (2)C10—C9—H9120.1
C7—C6—N1120.3 (2)C11'—C10'—C9'120.7 (2)
C7'—C6'—C11'121.9 (2)C11'—C10'—H10'119.7
C7'—C6'—N1'118.6 (2)C9'—C10'—H10'119.7
C11'—C6'—N1'119.5 (2)C11—C10—C9120.3 (2)
C3'—N3'—H3'A120.0C11—C10—H10119.8
C3'—N3'—H3'B120.0C9—C10—H10119.8
H3'A—N3'—H3'B120.0C10—C11—C6119.6 (2)
C6'—C7'—C8'118.7 (2)C10—C11—H11120.2
C6'—C7'—H7'120.7C6—C11—H11120.2
C8'—C7'—H7'120.7C10'—C11'—C6'118.3 (2)
C5'—N4'—C3'107.03 (18)C10'—C11'—H11'120.8
C5'—N4'—H4'126.5C6'—C11'—H11'120.8
N2—N1—C5—N5−179.4 (2)C11'—C6'—C7'—C8'−3.1 (3)
C6—N1—C5—N5−0.8 (4)N1'—C6'—C7'—C8'175.9 (2)
N2—N1—C5—N41.8 (2)N1'—C5'—N4'—C3'1.7 (2)
C6—N1—C5—N4−179.6 (2)N5'—C5'—N4'—C3'−179.7 (2)
C5—N1—N2—C3−1.7 (2)N2'—C3'—N4'—C5'−1.1 (3)
C6—N1—N2—C3179.49 (19)N3'—C3'—N4'—C5'179.6 (2)
N3'—C3'—N2'—N1'179.3 (2)N5—C5—N4—C3−180.0 (2)
N4'—C3'—N2'—N1'0.0 (2)N1—C5—N4—C3−1.1 (2)
C5'—N1'—N2'—C3'1.2 (2)N2—C3—N4—C50.0 (3)
C6'—N1'—N2'—C3'−179.8 (2)N3—C3—N4—C5−178.4 (2)
N1—N2—C3—N3179.3 (2)C11—C6—C7—C81.5 (3)
N1—N2—C3—N41.0 (2)N1—C6—C7—C8178.6 (2)
N2'—N1'—C5'—N5'179.6 (2)C6'—C7'—C8'—C9'1.4 (3)
C6'—N1'—C5'—N5'0.7 (4)C6—C7—C8—C9−1.3 (3)
N2'—N1'—C5'—N4'−1.8 (2)C7'—C8'—C9'—C10'1.3 (4)
C6'—N1'—C5'—N4'179.2 (2)C7—C8—C9—C100.0 (4)
C5—N1—C6—C11−147.8 (2)C8'—C9'—C10'—C11'−2.4 (4)
N2—N1—C6—C1130.7 (3)C8—C9—C10—C111.1 (4)
C5—N1—C6—C735.1 (3)C9—C10—C11—C6−0.9 (3)
N2—N1—C6—C7−146.4 (2)C7—C6—C11—C10−0.4 (3)
C5'—N1'—C6'—C7'−52.8 (3)N1—C6—C11—C10−177.5 (2)
N2'—N1'—C6'—C7'128.4 (2)C9'—C10'—C11'—C6'0.8 (3)
C5'—N1'—C6'—C11'126.2 (2)C7'—C6'—C11'—C10'2.0 (3)
N2'—N1'—C6'—C11'−52.6 (3)N1'—C6'—C11'—C10'−177.0 (2)
D—H···AD—HH···AD···AD—H···A
N3—H3A···N2'i0.862.203.037 (3)164
N3—H3B···Br10.862.563.387 (2)163
N3'—H3'A···N2ii0.862.343.046 (3)140
N3'—H3'B···Br20.862.653.404 (3)147
N4—H4···Br20.862.743.417 (3)137
N4'—H4'···Br20.862.513.254 (3)145
N5—H5A···Br1iii0.862.693.369 (3)137
N5—H5B···Br20.862.493.281 (3)153
N5'—H5'A···Br1iv0.862.843.489 (3)133
N5'—H5'B···Br10.862.433.278 (3)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯N2′i0.862.203.037 (3)164
N3—H3B⋯Br10.862.563.387 (2)163
N3′—H3′A⋯N2ii0.862.343.046 (3)140
N3′—H3′B⋯Br20.862.653.404 (3)147
N4—H4⋯Br20.862.743.417 (3)137
N4′—H4′⋯Br20.862.513.254 (3)145
N5—H5A⋯Br1iii0.862.693.369 (3)137
N5—H5B⋯Br20.862.493.281 (3)153
N5′—H5′A⋯Br1iv0.862.843.489 (3)133
N5′—H5′B⋯Br10.862.433.278 (3)167

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
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1.  4-Benzyl-3-[(1-oxidoethylidene)amino]-1-phenyl-4,5-dihydro-1H-1,2,4-triazol-5-iminium.

Authors:  Victor M Chernyshev; Anna G Mazharova; Victor B Rybakov
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-12

2.  2-Amino-5-methyl-3-(2-oxo-2-phenyl-eth-yl)-7-phenyl-4,5,6,7-tetra-hydro-3H-[1,2,4]triazolo[1,5-a]pyrimidin-8-ium bromide ethanol monosolvate.

Authors:  Victor M Chernyshev; Dmitriy A Pyatakov; Kyrill Yu Suponitsky
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