Cytoskeletal organization is central to establishing cell polarity in various cellular contexts, including during messenger ribonucleic acid sorting in Drosophila melanogaster oocytes by microtubule (MT)-dependent molecular motors. However, MT organization and dynamics remain controversial in the oocyte. In this paper, we use rapid multichannel live-cell imaging with novel image analysis, tracking, and visualization tools to characterize MT polarity and dynamics while imaging posterior cargo transport. We found that all MTs in the oocyte were highly dynamic and were organized with a biased random polarity that increased toward the posterior. This organization originated through MT nucleation at the oocyte nucleus and cortex, except at the posterior end of the oocyte, where PAR-1 suppressed nucleation. Our findings explain the biased random posterior cargo movements in the oocyte that establish the germline and posterior.
Cytoskeletal organization is central to establishing cell polarity in various cellular contexts, including during messenger ribonucleic acid sorting in Drosophila melanogaster oocytes by microtubule (MT)-dependent molecular motors. However, MT organization and dynamics remain controversial in the oocyte. In this paper, we use rapid multichannel live-cell imaging with novel image analysis, tracking, and visualization tools to characterize MT polarity and dynamics while imaging posterior cargo transport. We found that all MTs in the oocyte were highly dynamic and were organized with a biased random polarity that increased toward the posterior. This organization originated through MT nucleation at the oocyte nucleus and cortex, except at the posterior end of the oocyte, where PAR-1 suppressed nucleation. Our findings explain the biased random posterior cargo movements in the oocyte that establish the germline and posterior.
The organization of the cytoskeleton is central to establishing cell polarity in
oocytes and somatic cells in a variety of animals (Etienne-Manneville and Hall, 2003; Steinhauer and Kalderon, 2006) and has been a subject of considerable
interest (Steinhauer and Kalderon, 2006).
The general consensus has been that generating a strong intracellular polarity
always requires the cytoskeleton to become highly polarized. In the
Drosophila melanogaster oocyte, establishing the germline and
future axes of the embryo depends critically on molecular motor-based transport of
mRNA cargoes along microtubules (MTs; Brendza et
al., 2000; Palacios and St Johnston,
2002; Tekotte and Davis, 2002;
Serbus et al., 2005). For example,
bcd (bicoid) and grk
(gurken) mRNA, which are essential to establish the
anteroposterior and dorsoventral body axes, are transported by the MT minus
end–directed Dynein motor to the anterior cortex and dorsoventral corner,
respectively (St Johnston et al., 1989;
Roth et al., 1995). In a similar way,
the plus end–directed motor Kin1 (Kinesin-1; Brendza et al., 2000) transports mRNA encoding the posterior axis and
germline determinant osk (oskar; Ephrussi et al., 1991) to the posterior. Similar mechanisms of
transporting mRNAs operate in a wide range of polarized cell types, including
neurons and fibroblast cells, in which mRNA localization targets synthesis of
proteins to their site of function (St Johnston,
2005; Czaplinski and Singer,
2006; Rodriguez et al., 2008;
Meignin and Davis, 2010; Weil et al., 2010).The prevailing view of MT organization in the Drosophila oocyte is
of a relatively stable network with a strong bias in MT orientation toward the
posterior. This notion is largely based on static analysis of MT organization in
fixed material (Theurkauf et al., 1992;
Cha et al., 2002; Januschke et al., 2006) or using Tau-GFP to mark all MTs in
living egg chambers (Micklem et al., 1997).
Furthermore, the final distributions of cargoes or modified motor protein reporters
have been used to infer indirectly the overall distribution of plus or minus ends
(Clark et al., 1994, 1997; Micklem et al., 1997; Cha et al.,
2002; Becalska and Gavis, 2010).
These numerous studies have led to the formulation of three main conflicting models
for the organization of the MT network that directs the polarized transport of RNA
cargoes (Clark et al., 1994, 1997; Theurkauf and Hazelrigg, 1998; Cha et
al., 2001, 2002; Januschke et al., 2006; Zimyanin et al., 2008). In the simplest model, MTs are highly
polarized along the anteroposterior axis, such that minus ends are located at the
anterior with plus ends extending toward the posterior (Clark et al., 1994, 1997), and MTs show an overall gradient of decreasing density from
anterior to posterior (Micklem et al.,
1997). In the second model, MTs are nucleated around the cortex of the
oocyte, with the exception of the posterior, leading to plus ends of MTs being
directed toward the center (Cha et al.,
2002; Serbus et al., 2005). A
variation on this model is one in which the MTs are nucleated predominantly from the
oocyte nucleus (Januschke et al., 2006)
rather than all over the anterior. The third model proposes that a nonpolarized MT
network carries out transport along specifically oriented, biochemically and
functionally distinct MT subpopulations. Although posttranslational modifications of
MTs, such as acetylation, detyrosination, and glutamylation, that could account for
this are known from other systems (Reed et al.,
2006; Dunn et al., 2008; Hammond et al., 2008; Bartolini and Gundersen, 2010), there is currently no clear
evidence to identify such subpopulations in the Drosophila oocyte
from early to mid-oogenesis.The limitations of our understanding of MT organization in the oocyte were brought
into sharp focus when osk mRNA was shown to move at the posterior
of the oocyte in a biased random walk (Zimyanin et
al., 2008), which could not be explained well by any of the prevailing
models, leading to the possibility that the MTs themselves could adopt such a biased
random distribution of polarity. However, this hypothesis could not be tested
directly with the available data and methods of analysis of MT organization.
Moreover, to date, the different models for MT organization have not been
definitively tested because of a lack of direct studies of the dynamics and
orientations of the individual MTs that make up the MT network in the oocyte. This
is mostly because of technical difficulties in recording the complexity of MT
architecture and dynamics in such a large cell in vivo but also stems from the
inability to fix MTs instantly without some degree of depolymerization. These
limitations apply to oocytes and somatic cells in other systems, and in general,
there have not been any suitable imaging and image analysis tools for the
description of global MT polarity.Here, we distinguish between the prevailing models for MT organization and test
whether there is an underlying biased random distribution of MT plus ends toward the
posterior that could account for the observed posterior cargo transport. We achieve
this by characterizing the relationship between cargo movements and MT distribution
and by mapping global MT orientation in living oocytes using the MT plus end marker
EB1-GFP (Shimada et al., 2006) together
with state of the art imaging and development of novel image analysis, statistical,
and visualization methods. We find a highly dynamic MT network, upon which we
observe cargo movements that, despite its apparent randomness, shows an underlying
directionality bias that increases from anterior to posterior. Our observations
provide a good explanation for why osk mRNA and Staufen protein
move in a biased random walk to the posterior. We find no evidence of stable MT
subpopulations. Our experiments demonstrate MT nucleation from the anterolateral
cortex in a gradient of diminishing abundance to a complete absence from the
posterior, where we show that MT nucleation is suppressed by PAR-1. We propose that
subtleties in the organization of a highly dynamic MT network are a widespread
feature of cells displaying complex behaviors and changes in polarity.
Results
Dynamic MTs form a network extending from the anterior to the posterior of
stage 9 oocytes
Transport by the MT plus end–directed motor Kin1 has been shown to be
responsible for posterior cargo transport in the Drosophila
oocyte (Brendza et al., 2000, 2002; Cha
et al., 2001). It was subsequently proposed that MTs are absent from
the posterior so that Kin1 only transports cargoes to the center of the oocyte,
and cargo arrives at its final destination by diffusion and posterior capture
(Cha et al., 2002). To test this
hypothesis directly, we investigated the distribution of MTs in living oocytes
using sensitive rapid time-lapse imaging of Tau-GFP, which marks all MTs along
their entire length. We found that, at the anterior, the MT network consisted of
a dense, tight mesh of interleaved filaments throughout the cytoplasm (Fig. 1, A and A′). In contrast, at
the posterior, MTs are much less abundant but extend along the cortex into the
extreme posterior in early to mid-stage 9 oocytes (Fig. 1 A′′). We interpret the previous
failure to detect MTs at the posterior as being caused by posterior MT
depolymerization during fixation and the microscope methods used at the time
being too insensitive to detect the sparse MTs that extend into the
posterior.
Figure 1.
A dynamic network of MTs extends throughout the oocyte
posterior. Also see Video 1. (A–A′′)
Tau-GFP–labeled MT in a living stage 9 oocyte. (A) Overview from
anterior to posterior (projected 10-µm z series at reduced
magnification) showing the gradient in MT density. (A′ and
A′′) Two regions at increased magnification (100×
1.4 NA oil objective) showing the tight dense network of MTs toward the
anterior and the more sparse network of MTs extending into the extreme
posterior (projected 4-µm z series, which were contrasted
individually to display the MT present). (B) Comparison of the
Tau-GFP–labeled MT distribution at three time points merged as an
RGB image to highlight the changes. The individual channels are shown
below. Inserted diagrams in A and B show the orientation of the
Drosophila egg chamber and the portion of the
oocyte imaged. Throughout the images, the convention is posterior to the
right. Bars: (A) 25 µm; (A′ and B) 10 µm.
A dynamic network of MTs extends throughout the oocyte
posterior. Also see Video 1. (A–A′′)
Tau-GFP–labeled MT in a living stage 9 oocyte. (A) Overview from
anterior to posterior (projected 10-µm z series at reduced
magnification) showing the gradient in MT density. (A′ and
A′′) Two regions at increased magnification (100×
1.4 NA oil objective) showing the tight dense network of MTs toward the
anterior and the more sparse network of MTs extending into the extreme
posterior (projected 4-µm z series, which were contrasted
individually to display the MT present). (B) Comparison of the
Tau-GFP–labeled MT distribution at three time points merged as an
RGB image to highlight the changes. The individual channels are shown
below. Inserted diagrams in A and B show the orientation of the
Drosophila egg chamber and the portion of the
oocyte imaged. Throughout the images, the convention is posterior to the
right. Bars: (A) 25 µm; (A′ and B) 10 µm.There has been a general implicit assumption that cargo transport occurs on
stable networks of highly polarized MTs in the oocyte, but this has not been
addressed previously. To determine whether or not the posterior MTs are stable,
we performed time-lapse imaging to follow turnover of Tau-GFP–labeled MTs
(Fig. 1 B and Video
1). We measured the persistence of individual MTs and related
this to criteria for stability used in other cell types (Infante et al., 2000; Sousa et al., 2007). We found that, toward the posterior, nearly all
MTs examined persisted for <6 min (95%; n = 42),
whereas the maximum time of persistence observed for the sampled population was
10 min. In previous studies in tissue-culture cells, the criteria for dynamic
MTs is persistence for <15 min (Infante
et al., 2000). We conclude that MTs within the oocyte are unstable at
the posterior.We then investigated whether MTs are dynamic throughout the whole oocyte. To
overcome the technical difficulty that Tau-GFP labeling is too dense in the
anterior to assess the dynamics of individual MTs, we covisualized Tau-GFP MTs
with EB1-mCherry, which labels extending plus ends of MTs. Surprisingly, EB1
foci were found throughout the oocyte, the anterior MT meshwork being
particularly densely populated with multiple trajectories, running in different
orientations, both parallel and antiparallel along existing MTs (Fig. 2 A and Video
2). The mean rate of MT extension was 0.17 µm/s
(±0.01 SEM; maximum rate observed was 0.6 µm/s; n
= 4 oocytes), which is comparable with the rates of extension in
tissue-culture cells (Perez et al.,
1999). To determine what proportion of MTs were actively dynamic, we
quantified the relationship between Tau and EB1 labeling. Toward the posterior,
where it was possible to clearly identify individual MTs (Fig. 2 B and Video
3), we find that EB1 and Tau both mark the same population of
dynamically extending MTs (80% association; n = 452 MTs;
20% of MTs did not exhibit extension within the plane of focus and were not
associated with an extending EB1 trajectory). We conclude that the vast majority
of MTs are dynamic in the oocyte.
Figure 2.
EB1 tracks the plus ends of dynamic MTs throughout the
oocyte. (A) Dual-channel imaging of Tau-GFP and EB1-mCherry
expressed in the same oocyte reveals the association of EB1 with the
plus ends of Tau-labeled MTs throughout the oocyte (Video 2). Note that the density of EB1 tracks matches
the gradient in MT density from the anterior to posterior of the oocyte
and that individual MTs extend well into the extreme posterior. Insets
show the portion of the oocyte imaged and its orientation. (B) Tau-GFP
and EB1-GFP expressed in the same oocyte allow individual extending MTs
to be followed (Video 3). (right) Detail of two individual MTs extending
(black arrowheads mark the length of the MT, and white arrowheads mark
the extending plus end) taken from the region shown in B (bottom dashed
box and white arrowheads). A series of four time points is shown. (C) A
time course sequence from a time-lapse video showing that at the extreme
posterior, MTs tend to bend round the cortex back on themselves. The
images correspond to the top large region in B outlined with white dots.
White arrowheads highlight a single extending MT, whereas at the final
time point, several MTs are indicated with dashed arrows, which is drawn
from Video 3. A, anterior; P, posterior. Bars: (A and B, left) 15
µm; (B, right; and C) 7.5 µm.
EB1 tracks the plus ends of dynamic MTs throughout the
oocyte. (A) Dual-channel imaging of Tau-GFP and EB1-mCherry
expressed in the same oocyte reveals the association of EB1 with the
plus ends of Tau-labeled MTs throughout the oocyte (Video 2). Note that the density of EB1 tracks matches
the gradient in MT density from the anterior to posterior of the oocyte
and that individual MTs extend well into the extreme posterior. Insets
show the portion of the oocyte imaged and its orientation. (B) Tau-GFP
and EB1-GFP expressed in the same oocyte allow individual extending MTs
to be followed (Video 3). (right) Detail of two individual MTs extending
(black arrowheads mark the length of the MT, and white arrowheads mark
the extending plus end) taken from the region shown in B (bottom dashed
box and white arrowheads). A series of four time points is shown. (C) A
time course sequence from a time-lapse video showing that at the extreme
posterior, MTs tend to bend round the cortex back on themselves. The
images correspond to the top large region in B outlined with white dots.
White arrowheads highlight a single extending MT, whereas at the final
time point, several MTs are indicated with dashed arrows, which is drawn
from Video 3. A, anterior; P, posterior. Bars: (A and B, left) 15
µm; (B, right; and C) 7.5 µm.To further investigate the dynamic nature of the MTs, we tested for the presence
of posttranslational tubulin modifications, which is an accepted indicator of MT
stabilization (Hammond et al., 2008).
We performed immunolabeling for acetylated and glutamylated tubulin. Our results
show that, although MTs in follicle cells, which are known to show increased
resistance to MT depolymerization treatments (Januschke et al., 2006), contain modified tubulin, the oocyte MTs
lack modified tubulin (Fig.
S1). These observations are consistent with our demonstration of
dynamic MTs in the oocyte. Considering our results so far, we conclude that MTs
extend into the extreme posterior of the oocyte and are highly dynamic and
unstable throughout the whole oocyte. This raises the question of whether
Kin1-dependent cargo transport is supported on these dynamic unstable MTs.
Posterior-directed cargoes are actively transported on a network of dynamic
MTs at the posterior of the oocyte
To determine directly whether the dynamic MTs we observe extending into the
posterior are used for posterior cargo transport, we covisualized MTs and
Staufen-RFP at high resolution during early to mid-stage 9, at the peak of
active cargo redistribution from the center of the oocyte to the posterior
(Fig. 3). We found a clear overlap
between posterior MTs and actively transported Staufen-RFP particles (Fig. 3 A). Quantifying the relationship
between MTs and Staufen particles, we found that 84% of Staufen-RFP particles
(n = 25) that showed directed transport could be
directly observed moving on Tau-GFP–labeled MTs (Fig. 3 B and Video
4). We followed individual MTs upon which cargo movement was
observed and found them to be unstable (persisted <10 min). Moreover, we
observed several instances of MTs depolymerizing very shortly after the particle
transit (Fig. 3 B, bottom; and Video
5). We conclude that the individual dynamic MTs present at the
posterior are genuine conduits for posterior cargo transport.
Figure 3.
Staufen protein is transported on MTs at the oocyte
posterior. Also see Fig. S1 and Video 4. (A) Dual-channel imaging of Staufen-RFP (A,
left and bottom) and Tau-GFP (A, right and bottom). Dashed arrows
indicate paths of cargo transit along the cortex. (B) A single Staufen
particle moving on Tau-GFP–labeled MTs taken from the outlined
region in A (bottom). (B, bottom) Time sequence of the particle (right,
white arrowheads) moving in two runs along two different MTs (left,
black arrowheads). The two MTs are indicated with arrowheads in the last
three images to highlight the depolymerization of the lower one. A,
anterior; P, posterior; N, oocyte nucleus. Bars: (A and C) 15 µm;
(B) 7.5 µm.
Staufen protein is transported on MTs at the oocyte
posterior. Also see Fig. S1 and Video 4. (A) Dual-channel imaging of Staufen-RFP (A,
left and bottom) and Tau-GFP (A, right and bottom). Dashed arrows
indicate paths of cargo transit along the cortex. (B) A single Staufen
particle moving on Tau-GFP–labeled MTs taken from the outlined
region in A (bottom). (B, bottom) Time sequence of the particle (right,
white arrowheads) moving in two runs along two different MTs (left,
black arrowheads). The two MTs are indicated with arrowheads in the last
three images to highlight the depolymerization of the lower one. A,
anterior; P, posterior; N, oocyte nucleus. Bars: (A and C) 15 µm;
(B) 7.5 µm.To determine whether transport on the dynamic MTs could make a significant
contribution to the net movement of the posterior-directed cargo, we analyzed
the proportion of particles that display active transport. We found that, at any
given time, 14.1% of Staufen-RFP cargo particles identified show directed
transport. The remainder were either stationary or exhibited very small
nondirectional displacements (n = 1,080 particles;
unpublished data). Our results suggest that at stage 9, active transport rather
than diffusion or bulk cytoplasmic flow is the major contributor to cargo
localization to the posterior. We conclude that transport along dynamic MTs
makes a significant contribution to the movement of posterior cargo, but these
findings are not in themselves sufficient to fully explain the stochastic nature
of biased random cargo movements to the posterior (Zimyanin et al., 2008). Crucially, what is the underlying
MT organization, and how does it account for the directional bias of cargo
movements?
MT plus ends are organized in an anteroposterior gradient of orientation
bias
Previous models for posterior cargo transport propose directed transport of
cargoes away from the cortex (Cha et al.,
2002) or directed transport on a MT cytoskeleton that is strongly
polarized with the MT plus ends directed away from the anterior (Clark et al., 1994, 1997). Neither of these models explains the observed
biased random cargo movements (Fig. 4 D;
Zimyanin et al., 2008). A possible
alternative model is that posterior biased random cargo movements are simply a
reflection of an underlying biased random distribution of MT polarity in the
oocyte. We tested this model directly using EB1-GFP as a reporter of the
distribution and orientation of individual MTs throughout the oocyte as
demonstrated in the first Results section (Fig.
2). Although individual tracks could be discerned by eye in a
time-lapse video (Videos 2 and 3), it was not possible to determine global bias
in the orientation of a field of MTs by manual inspection, necessitating the
development of quantitative, automated methods. To our knowledge, there were no
preexisting tools to analyze, plot, or characterize statistically MT orientation
across a whole cell. Therefore, we developed new approaches to facilitate
automatic tracking and quantify, statistically analyze, and display the ensemble
polarity of EB1-GFP–labeled plus end trajectories. To achieve this, we
first developed methods to effectively “extract” the moving
components of an image sequence, to allow the dynamic EB1 foci to be robustly
distinguished from the background in noisy image sequences (see Materials and
methods; Fig.
S2). Probabilistic “soft segmentation” approaches
were incorporated (Sharma and Aggarwal,
2010) to preserve image information. After these processing steps,
automatic tracking was possible using conventional linkage analysis (Sbalzarini and Koumoutsakos, 2005; Yang et al., 2010) with minor
modifications (see Materials and methods). We validated our automated tracking
methods against manually tracked data, the so-called “ground
truth” (see Materials and methods), and confirmed that we could
accurately determine MT organization (Fig.
S3).
Figure 4.
Analysis of EB1 trajectories reveals a graded bias in MT
orientation. (A) Automatically tracked EB1 trajectories from
a 120-frame video sequence imaged at three frames per second (fps; see
Materials and methods; Fig. S2 and Fig. S3). The dashed white border indicates the track
data plotted in the middle and right plots. Follicle cells are excluded.
The central white dashed line indicates the anterior–posterior
axis. The color of each track (refer to the color key on the bottom
right), cyan, blue, red, or purple, corresponds to 90° ranges for
anterior, posterior, dorsal, or ventral orientations. (bottom left)
Inset shows the region of the oocyte imaged. (A, middle) Map of local
net EB1 track orientation dividing the oocyte into 256 subregions. The
color of each subregion is as described for A (left), although here, the
net orientation of all racks crossing that subregion is indicated. The
white arrow indicates the exact net orientation, whereas the density of
color is proportional to the number of tracks for each subregion.
(right) Summary of all orientation data from left plot. Combined
circular histogram (outer dot plot indicating the orientation of each
individual trajectory) and rose diagram (inner circular histogram plot
of EB1 trajectories split over 24 15° ranges). The anterior
versus posterior bias in orientation is also shown (bottom right) as the
ratio of trajectories oriented within a 180° angle to the
anterior (left of the dashed black vertical line) versus the 180°
angle to the posterior (right). (B) Similar plots to those shown in A
(right) summarizing data for 10 oocytes. (C) Plots comparing MT
orientation for three adjacent 15-µm-wide regions of the oocyte
at increasing distance from the posterior (left inset: anterior, mid,
and posterior). (D) Manually tracked Staufen cargo movements in stage 9
oocytes. Particle trajectory orientations are plotted as rose diagrams
with the proportion of particles trajectories shown in each of the eight
45° segments. The first rose diagram plots all moving cargoes in
the posterior 30 µm (see inset). The second and third plots show
subregions of 15 µm within the same area (see inset). The
anterior versus posterior bias is shown as the ratio of trajectories
oriented within a 180° angle to the anterior (left) versus the
180° angle to the posterior (right), confirming the bias in
transport toward the posterior reported in Zimyanin et al. (2008). The dark asterisks on the
first plot highlight the strong bias in the top and bottom
posterior-directed segments, which can also be seen in the plots of MT
orientation (A, right; and C, posterior region plot) and correspond to
movements associated with MTs along the lateral cortex (highlighted in
Fig. 3 A as dashed lines). A,
anterior; P, posterior. Bars, 15 µm.
Analysis of EB1 trajectories reveals a graded bias in MT
orientation. (A) Automatically tracked EB1 trajectories from
a 120-frame video sequence imaged at three frames per second (fps; see
Materials and methods; Fig. S2 and Fig. S3). The dashed white border indicates the track
data plotted in the middle and right plots. Follicle cells are excluded.
The central white dashed line indicates the anterior–posterior
axis. The color of each track (refer to the color key on the bottom
right), cyan, blue, red, or purple, corresponds to 90° ranges for
anterior, posterior, dorsal, or ventral orientations. (bottom left)
Inset shows the region of the oocyte imaged. (A, middle) Map of local
net EB1 track orientation dividing the oocyte into 256 subregions. The
color of each subregion is as described for A (left), although here, the
net orientation of all racks crossing that subregion is indicated. The
white arrow indicates the exact net orientation, whereas the density of
color is proportional to the number of tracks for each subregion.
(right) Summary of all orientation data from left plot. Combined
circular histogram (outer dot plot indicating the orientation of each
individual trajectory) and rose diagram (inner circular histogram plot
of EB1 trajectories split over 24 15° ranges). The anterior
versus posterior bias in orientation is also shown (bottom right) as the
ratio of trajectories oriented within a 180° angle to the
anterior (left of the dashed black vertical line) versus the 180°
angle to the posterior (right). (B) Similar plots to those shown in A
(right) summarizing data for 10 oocytes. (C) Plots comparing MT
orientation for three adjacent 15-µm-wide regions of the oocyte
at increasing distance from the posterior (left inset: anterior, mid,
and posterior). (D) Manually tracked Staufen cargo movements in stage 9
oocytes. Particle trajectory orientations are plotted as rose diagrams
with the proportion of particles trajectories shown in each of the eight
45° segments. The first rose diagram plots all moving cargoes in
the posterior 30 µm (see inset). The second and third plots show
subregions of 15 µm within the same area (see inset). The
anterior versus posterior bias is shown as the ratio of trajectories
oriented within a 180° angle to the anterior (left) versus the
180° angle to the posterior (right), confirming the bias in
transport toward the posterior reported in Zimyanin et al. (2008). The dark asterisks on the
first plot highlight the strong bias in the top and bottom
posterior-directed segments, which can also be seen in the plots of MT
orientation (A, right; and C, posterior region plot) and correspond to
movements associated with MTs along the lateral cortex (highlighted in
Fig. 3 A as dashed lines). A,
anterior; P, posterior. Bars, 15 µm.Using these techniques, we assessed whether the dynamic MT network is organized
in a biased random global orientation. Plotting individual MT trajectories
(Fig. 4 A, left) highlights the
apparent randomness of MT orientation. In contrast, calculating net local MT
directionality across the oocyte (Hamilton et
al., 2010) and displaying this as a windmap (Fig. 4 A, middle) revealed an overall subtle bias toward
the posterior. To facilitate comparison of net orientation between different
oocytes and to permit the display of pooled data from multiple oocytes,
orientation data are summarized as a combined circular histogram and rose
diagrams (Fig. 4, A [right, single
oocyte] and B [pooled data for 10 oocytes]). For simplicity, the data are also
summarized as the proportion of tracks oriented toward the posterior versus
toward the anterior (Fig. 4, A [right,
inset] and B [right]). This analysis revealed a consistent net overall bias of
MT plus ends directed toward the posterior: 42.0% anterior to 58.0% posterior
(n = 10 oocytes; Table I).
Table I.
Summary of tracking statistics
Videos tracked
Ant/Post Bias
Deviation from random
Comparison (Watson test)
Percent Ant (n)
Percent Post (n)
Rayleigh test
%
%
Global EB1
42.0 (8,613)
58.0 (11,881)
1 × 10−133
+++
Global EB1 versus Staufen: 0.001 < P
< 0.01 (some similarity)
Global Staufen
44.1 (215)
55.9 (273)
3.2 × 10−4
+
par-1 EB1
49.4 (2,811)
50.6 (2,879)
2.5 × 10−3
−
par1 versus global EB1: P < 0.001
(different to global EB1)
Global EB1a
42.0 (8,613)
58.0 (11,881)
1 × 10−133
+++
Ant EB1
46.4 (3,824)
53.6 (4,416)
1.7 × 10−10
++
Ant versus mid: P < 0.001 (different)
Mid EB1
39.6 (2,188)
60.4 (3,341)
4.2 × 10−65
+++
Mid versus post: P < 0.001
(different)
Post EB1
36.9 (1,466)
63.1 (2,506)
1.4 × 10−79
+++
Ant versus post: P < 0.001
(different)
Ant EB1a
46.4 (3,824)
53.6 (4,416)
1.7 × 10−10
++
Ant, anterior; Post, posterior. In the Rayleigh test for uniformity
of directional data, the degree of deviation from random is given
(Mardia and Jupp,
2000). Results of the Rayleigh test are displayed on a scale
from random (−) to not at all random
(+++). In the Watson two-sample test for
homogeneity of two samples of circular data, the higher the p-value,
the more similar the populations (Mardia and Jupp, 2000).
Duplicate data entries included to clarify the pairwise comparisons
by Watson test.
Summary of tracking statisticsAnt, anterior; Post, posterior. In the Rayleigh test for uniformity
of directional data, the degree of deviation from random is given
(Mardia and Jupp,
2000). Results of the Rayleigh test are displayed on a scale
from random (−) to not at all random
(+++). In the Watson two-sample test for
homogeneity of two samples of circular data, the higher the p-value,
the more similar the populations (Mardia and Jupp, 2000).Duplicate data entries included to clarify the pairwise comparisons
by Watson test.To determine how a dynamic MT network supports such an orientation bias, we
assessed individual oocytes repeatedly at 15-min intervals (Fig.
S4). We find that although small subregions show considerable
variation in net orientation over time, which is consistent with a very dynamic
network (Fig. S4, A and C, corresponding overlay of individual tracks), the
overall bias is preserved (Fig. S4 B). Similar results were found for four
oocytes (mean posterior bias of 59.3%; SD of 2.4%). We then tested whether MT
orientation varies from anterior to posterior by defining and comparing regions
of interest covering the anterior, mid-region, and posterior (Fig. 4 C, inset). We found that the
strength of bias in MT orientation within the oocyte increases with distance
from the anterior (Fig. 4 C), with a
statistically significant stronger bias within 15 µm of the posterior
cortex (36.9% anterior to 60.1% posterior; n = 8
oocytes; Table I).To determine whether a random biased transport process acting on the dynamic MT
network could quantitatively account for the observed movement of cargoes, we
applied our novel global polarity visualization tools to quantitative analysis
of Staufen-RFP trafficking. Our analysis revealed a statistically significant
net bias in the direction in active transport of 39.2% anterior to 60.8%
posterior (337 particle trajectories and four oocytes; χ2
test, 99% confidence; Fig. 4 D).
Comparison of regions at different distances from the posterior (Fig. 4 D, second and third plot and insets)
shows that the bias in net movement is consistently stronger toward to posterior
(62.3% posterior bias compared with 56.8% bias; n = 3
oocytes). Reexamination and statistical analysis of directionality for data from
Zimyanin et al. (2008) showed
general agreement with our current findings (Table I), although the bias toward the posterior was found to be
less at the extreme posterior. This is likely to be a result of the inclusion of
late stage 9 oocytes in the dataset, in which analysis of trajectories is
hampered by the dense accumulation of fluorescent material at the posterior. Our
results analyzing Staufen-RFP trafficking closely parallel the directional bias
in MT organization and are entirely consistent with our model of the
organization of the dynamic MT network underlying the observed transport.
Collectively, these results demonstrate that a biased MT organization in the
oocyte provides a good explanation for the movement of posterior-localizing
cargoes through a biased random walk. Having determined the organization of the
MT network in the oocyte, our findings raise the important questions what causes
the bias in MT orientation, and how is this bias established and maintained?
A gradient in the density of MT initiation supports a net bias in MT
orientation
To understand how the bias in MT polarity of the stage 9 oocyte is established
and maintained, we first determined the distribution of γ-tubulin in the
oocyte, previously used as a marker for the MT-organizing centers (Januschke et al., 2006). To maximize the
contrast and detect fainter structures over the considerable background in the
thick oocyte cytoplasm, we examined γ-tubulin37C–GFP distribution
in live stage 9 oocytes using spinning-disc confocal microscopy. We find that,
in addition to the previously described very bright foci associated with the
nucleus (Fig. S5
A, middle, right, and bottom; Januschke et al., 2006), there are weaker foci distributed along the
anterior and lateral cortexes (Fig. S5 A). To test more directly whether, as
suggested by the γ-tubulin distribution, MTs are nucleated at the
anterolateral cortex, we performed MT depolymerization and regrowth experiments.
Feeding flies with food containing colcemid (see Materials and methods), a
potent inhibitor of MT polymerization, abolishes both Tau-GFP–labeled MT
and EB1-GFP tracks in the oocyte, leaving persistent fluorescent foci along the
anterior and lateral cortexes (Fig. 1 A
and Fig. 5, A and B). We find that both
Tau-GFP an EB1-GFP are present in foci at the anterolateral cortex (Fig. 5, A and B, respectively; and Fig. S5
B), whose density decreases markedly in a gradient toward the posterior (Fig. 5,
B–B′′′′; and Fig. S5 B), but foci
were not observed around the extreme posterior cortex (Fig. 5 B). Colcemid is known to shift the dynamic
equilibrium of MT growth and disassembly toward depolymerization, leading to the
shortening of MTs so that only short stubs of MTs remain at the site of
initiation of MT growth. Therefore, we interpret our results as indicating that
oocyte MTs are nucleated from the observed foci along the anterior and lateral
cortexes.
Figure 5.
MT nucleation occurs at discrete foci along the cortex but is
absent from the posterior. Also see Fig. S5 and Videos 6 and 7). (A) Tau-GFP–expressing oocyte treated with
colcemid (see Materials and methods) showing the reduction of Tau-GFP MT
labeling to small discrete foci; (right, first image) subregion of A
shown enlarged; (second image) the same region after 60 s of UV
inactivation protocol showing the initiation of MTs from the small foci;
(third image) 15 min after UV inactivation showing extensive MT
regrowth. (B) Oocyte expressing EB1-GFP similarly treated with colcemid
revealing similar foci, which can be seen to distribute in a gradient of
density from the anterior to posterior but appear to be absent from the
extreme posterior (the extreme posterior is indicated by a star.
(B′–B′′′′) Selected regions
shown at increased magnification (highlighted in B and along a transect
between the white asterisk and star). (C) Regrowth of MT after UV
inactivation of colcemid assessed by the reappearance of
EB1-GFP–labeled tracks (Videos 6 and 7) shows a lack of MT
initiation from the posterior cortex. Images were foreground extracted
(see Materials and methods) to identify actively extending EB1 tracks.
Three time points are shown from the time sequence of UV inactivation of
colcemid. For each image, a plot of pixel intensity from anterior to
posterior is presented (corresponding to the region highlighted in the
dashed box), relating to regrowth of MTs and revealing the restriction
of MT initiation to the anterior regions. A, anterior; P, posterior; N,
oocyte nucleus. Bars: (A–C) 20 µm; (A, right; and
B′) 5 µm; (B′′′′) 10
µm.
MT nucleation occurs at discrete foci along the cortex but is
absent from the posterior. Also see Fig. S5 and Videos 6 and 7). (A) Tau-GFP–expressing oocyte treated with
colcemid (see Materials and methods) showing the reduction of Tau-GFP MT
labeling to small discrete foci; (right, first image) subregion of A
shown enlarged; (second image) the same region after 60 s of UV
inactivation protocol showing the initiation of MTs from the small foci;
(third image) 15 min after UV inactivation showing extensive MT
regrowth. (B) Oocyte expressing EB1-GFP similarly treated with colcemid
revealing similar foci, which can be seen to distribute in a gradient of
density from the anterior to posterior but appear to be absent from the
extreme posterior (the extreme posterior is indicated by a star.
(B′–B′′′′) Selected regions
shown at increased magnification (highlighted in B and along a transect
between the white asterisk and star). (C) Regrowth of MT after UV
inactivation of colcemid assessed by the reappearance of
EB1-GFP–labeled tracks (Videos 6 and 7) shows a lack of MT
initiation from the posterior cortex. Images were foreground extracted
(see Materials and methods) to identify actively extending EB1 tracks.
Three time points are shown from the time sequence of UV inactivation of
colcemid. For each image, a plot of pixel intensity from anterior to
posterior is presented (corresponding to the region highlighted in the
dashed box), relating to regrowth of MTs and revealing the restriction
of MT initiation to the anterior regions. A, anterior; P, posterior; N,
oocyte nucleus. Bars: (A–C) 20 µm; (A, right; and
B′) 5 µm; (B′′′′) 10
µm.To test directly whether MT growth from the anterior and lateral cortexes can
give rise to the normal MT distribution in the oocyte, we inactivated colcemid
with an exposure to UV light that is not harmful to oocyte viability (Theurkauf and Hazelrigg, 1998; Cha et al., 2002). It has been previously
shown that UV inactivation of colcemid permits an MT network to reestablish and,
as has been shown previously, this reestablished network is competent to support
MT dependent RNA transport (Cha et al.,
2001). We found that immediately upon inactivation of colcemid, MT
growth initiated strongly along the anterior and the lateral cortex. MTs were
initiated from each of the persistent cortical foci in an undirected manner
consistent with normal MT organization. (Fig. 5
A and Videos
6 and 7). Although no regrowth of MTs was observed from the extreme
posterior cortex (Fig. 5 C), we showed
earlier that some MTs appear to orient away from the posterior. This could be
explained by our observations of MTs extending from more anterior regions and
bending round on themselves (Fig. 2 C and
Video 3). Our data account for the overall distributions of MT orientations as
well as the orientation of cargo transported at the extreme posterior (Fig. 4, C and D), showing that the small
proportion of “backwards” trajectories are, in fact, predominantly
oriented at steep lateral angles. Collectively, the distribution of MT
initiation sites along the anterolateral cortex, but not the posterior cortex,
provides an explanation for the observed MT network with an excess of MT plus
ends directed toward the posterior.
PAR-1 is required for the exclusion of MT nucleation from the posterior
cortex that causes the posterior bias in MT polarity in the oocyte
PAR-1 N1S loss-of-function mutant oocytes have previously been shown to disrupt
MT organization, leading to increased density of MTs at the posterior and
mislocalization of osk mRNA (Doerflinger et al., 2006, 2010). To test whether PAR-1 is required for the establishment of
the polarity bias in MT orientation, we examine the organization of MTs in the
strong loss-of-function par-1 allelic combination
(par-16323/par-1W3). In marked contrast to wild type,
we found that in par-1 mutant oocytes, EB1-GFP distribution
shows a high density of MTs throughout the posterior with distinct EB1 foci of
MT nucleation detectable around the posterior cortex (Fig. 6, A–C; and Videos
8 and 9). These sites extend MTs away from the posterior toward the
anterior such that the MT plus ends in the posterior region are directed away
from the posterior cortex, the opposite orientation to the wild type.
Consequentially, we find that the net posterior bias of plus end trajectories
was reduced or completely abolished in the mutant background: 49.4% anterior to
50.6% posterior (n = 4 oocytes; also see Table I and Fig. 6, D–F). The suppression of MT initiation at
the posterior cortex accounts for the sharp falloff in MT density and
distribution of polarity bias in the oocyte. Dual imaging of EB1-GFP and
Staufen-RFP in the par-1 mutant background confirmed that
posterior cargo is mislocalized as previously described in
par-1 mutants (unpublished data), whereas time-lapse
bright-field imaging revealed no obvious difference in cytoplasmic movements in
par-1 mutant oocytes compared with wild type (unpublished
data). We conclude that the restriction of MT nucleation sites from the
posterior cortex, as a consequence of PAR-1 action, is essential for the
establishment and/or maintenance of the posterior bias in MT organization.
Figure 6.
MTs are nucleated around the entire posterior in
Also see Videos 8 and 9. (A) Trails projected EB1-GFP image time series.
Arrowheads indicate EB1 foci nucleating MTs. The dashed line
distinguishes oocyte and follicle cells, and an asterisk marks the
posterior. (B) Image as in A after foreground extraction, highlighting
EB1 foci nucleating MTs throughout the posterior. (C) Wild-type oocyte
processed as in B showing the absence of MT initiating from the
posterior cortex. (D–F) Mapping MT orientation in the
par-1 hypomorphic mutant: tracked EB1 trajectories,
windmap, and rose diagram (refer to Fig
4 and Materials and methods for further details). A,
anterior; P, posterior; N, oocyte nucleus. Bars, 15 µm.
MTs are nucleated around the entire posterior in
Also see Videos 8 and 9. (A) Trails projected EB1-GFP image time series.
Arrowheads indicate EB1 foci nucleating MTs. The dashed line
distinguishes oocyte and follicle cells, and an asterisk marks the
posterior. (B) Image as in A after foreground extraction, highlighting
EB1 foci nucleating MTs throughout the posterior. (C) Wild-type oocyte
processed as in B showing the absence of MT initiating from the
posterior cortex. (D–F) Mapping MT orientation in the
par-1 hypomorphic mutant: tracked EB1 trajectories,
windmap, and rose diagram (refer to Fig
4 and Materials and methods for further details). A,
anterior; P, posterior; N, oocyte nucleus. Bars, 15 µm.
Discussion
Despite the importance of MTs in the oocyte, how they are organized and to what
extent they are dynamic have remained highly controversial. Moreover, the prevailing
models for MT organization have mostly relied on a static view of MT distribution
and on indirect measures of polarity, such as the steady-state distribution of motor
fusions and cargoes. By using live-cell imaging and developing novel image analysis
and global visualization tools, we have characterized directly the dynamics and
polarity of MTs in living oocytes. We have found that MTs form a dynamic cortical
network extending into the posterior with a bias in net orientation that increases
toward the posterior. We have established that posterior-directed cargo is actively
transported on these dynamic MTs, with no evidence for preferential transport by a
subpopulation of more stable, posttranslationally modified MTs. Significantly, the
magnitude and distribution of the observed bias in cargo movements parallels closely
the polarity of the MT network. These findings explain the previously reported
subtle biased random transport of posterior cargoes (Zimyanin et al., 2008) and lead us to propose the following
model for posterior cargo localization: posterior cargo is transported on the entire
dynamic MT network and the overall net bias in MT orientation directs the net
movement of cargo to the posterior cap, where it becomes anchored (Fig. 7, A and B).
Figure 7.
A biased random organization of MTs in the oocyte delivers cargoes to
the posterior. (A) Interpretive model of biased random transport
of posterior-localizing cargoes on a subtly polarized MT network. (B)
Relating the distribution and orientation of MTs to the observed behavior of
Staufen cargoes.
A biased random organization of MTs in the oocyte delivers cargoes to
the posterior. (A) Interpretive model of biased random transport
of posterior-localizing cargoes on a subtly polarized MT network. (B)
Relating the distribution and orientation of MTs to the observed behavior of
Staufen cargoes.
PAR-1–dependent exclusion of MT nucleation at the posterior of the
oocyte establishes a biased MT network
Our results reveal that the establishment of the biased MT network is dependent
on a specific distribution of MT nucleation sites around the oocyte cortex, with
a critical, PAR-1–dependent exclusion of MT nucleation from the posterior
cortex. This extends upon previous observations that PAR-1 affects MT
organization, leading to an increased density of MTs at the posterior (Doerflinger et al., 2010). By using
highly sensitive imaging techniques in live oocytes, we demonstrate that, in
contrast to previous work (Januschke et al.,
2006), in stage 9 oocytes, MT nucleation is also distributed along
the anterior and lateral cortexes. Initiation of MTs is predominantly from the
anterior of the oocyte with a sharp decrease in nucleation along the posterior
two thirds of the oocyte cortex. Those MTs nucleating along the anterior are
constrained to grow in a more posterior orientation, whereas nucleation along
the lateral cortex is more random in orientation. The combination of these two
contributions to the network of MTs present in the oocyte results in a slight
excess of plus ends extending in a posterior direction, which increases in
magnitude closer to the posterior. Despite the fact that, at the extreme
posterior, there are no MT nucleation sites, we find that, even at the extreme
posterior, a percentage of MTs appear to orient toward the anterior. We show
that this is caused by MTs bending around as they extend into the posterior.
Importantly, our detailed analysis of cargo movements reveals a bias in cargo
movement directionality at the posterior that matches precisely the bias in MT
orientation.It is interesting to consider how the PAR-1 kinase might prevent the nucleation
of MTs at the posterior cortex. The PAR genes are conserved polarity
determinants with common functions in a variety of organisms (Shulman et al., 2000; Pellettieri and Seydoux, 2002). PAR-1 is
known to function in association with other PAR proteins, so it is possible that
the other PAR proteins also function together with PAR-1 to inhibit MT
nucleation in the oocyte. However, several other factors may also be involved.
PAR-1 could affect MTs through its association with Tau, which has been shown in
mammalian cells (Nishimura et al.,
2004) and proposed in the Drosophila oocyte (Tian and Deng, 2009), but this remains
contentious, as the presence of Tau is not absolutely required for PAR-1
function (Doerflinger et al., 2003,
2010). Another possibility is that
PAR-1 could act through the components of the γ-TuRC complex or some
other MT nucleation components, rather than through a direct affect on MTs.
Whatever the molecular mechanism of PAR-1 inhibition of MT nucleation, it is
most likely to involve the phosphorylation of a downstream target of the PAR-1
kinase.
A biased random dynamic network of MTs can perform multiple conflicting roles
at a key developmental transition
Our live-imaging results highlight the role of a dynamic MT network in
establishing cell polarity in the oocyte, in which we did not detect any stable,
posttranslationally modified MTs. This raises the question of why this should be
the case when, in some other cells, subsets of either stably bundled or
completely stable, posttranslationally modified MTs have been observed and
proposed to have functional roles in directing cell polarity (Li and Gundersen, 2008; Bartolini and Gundersen, 2010). Moreover,
in many polarized cell types, including the blastoderm embryo and secretory
columnar epithelial cells of egg chambers, MTs are organized with a very strong
apical–basal polarity and include stable MTs. This makes functional sense
in both cases, as cargoes have to be transported very rapidly either apically or
basally. In contrast, in the oocyte, MTs perform three key functions that are
not necessarily all compatible with having a very strict apical–basal
polarity. First, they provide a means of randomly distributing generic
components, such as mitochondria and lipid droplets, throughout the cytoplasm.
Second, they provide a network to gather cargoes and redistribute them to
distinct intracellular destinations, initiating and maintaining cell polarity.
Third, they provide a scaffold that maintains structural integrity. We propose
that the dynamic, subtly biased network of MTs in the oocyte provides an
efficient compromise for dealing with these multiple conflicting biological
requirements. During mid-oogenesis, the oocyte undergoes a huge expansion in
size, when many cellular components are transported from the nurse cells or
secreted from the overlying follicle cells. Although generic cellular
components, such as Golgi, mitochondria (Hollenbeck and Saxton, 2005), and lipid droplets, must be kept
distributed throughout the ooplasm (Herpers
and Rabouille, 2004), the nucleus and specific mRNAs and proteins
must be transported to different poles to establish the embryonic axes. A biased
random network of MTs enables the mixing of generic components by continuous
transport using molecular motors with opposing polarities, while, at the same
time, allowing specific components to be transported by motors with single
polarities to the anterior or posterior poles for anchoring. Furthermore, a
network of highly dynamic MTs would allow efficient capturing of cargo by the
motors throughout the entire ooplasm in a rapidly growing and developing oocyte.
The fact that the MT network is highly dynamic also makes considerable
functional sense for such a rapidly developing system. The MT cytoskeleton is
reorganized extensively during Drosophila oogenesis but most
dramatically during stage 7 (González-Reyes et al., 1995). This fits well with
observations in other cell types showing that MTs are highly dynamic in nature
and are often reorganized to direct cellular polarization (Mogensen et al., 2000; Etienne-Manneville and Hall, 2003; Jankovics and Brunner, 2006; Geraldo and Gordon-Weeks, 2009; Ohama and Hayashi, 2009; Bartolini
and Gundersen, 2010).
Dynamic, subtly biased MT networks are likely to occur in many cell
types
MTs certainly play critical roles in driving cell polarization and extension in
many kinds of eukaryotic cells (Franz et al.,
2002), for example, during guidance of extending neuronal growth
cones (Geraldo and Gordon-Weeks, 2009),
in migratory cells (Wood and Jacinto,
2007), in dorsal closure (Jankovics
and Brunner, 2006), and in fields of bristles with planar polarity in
fly wings (Lawrence et al., 2007). In
all these cases, the polarity and dynamics of MTs have tended to be studied
quite crudely because of an inability to follow the subtleties of global MT
polarity and dynamics. Therefore, it is highly likely that MTs in such cells are
more complex and subtle than previously thought. Interestingly, at least in
Xenopus laevis oocytes in which hook decoration and EM were
used as the previous gold standard for determining the polarity of individual
MTs, a network of MTs is nucleated at the cortex, leading to a bias of polarity
rather than an absolute polarity (Pfeiffer and
Gard, 1999). Our methods are significantly easier to apply
technically than hook decoration methods and are, therefore, more generally
applicable to study the orientation and dynamics of MTs in most cells. For
example, we have been able to apply our analysis tools to examine subtleties of
MT organization in migratory border cells (unpublished data).We propose that during cellular reorganization and repolarization, as in the
oocyte, the establishment of a dynamic, subtly biased MT network is a widespread
phenomenon and provides a general mechanism by which strong cell polarity can be
initiated and maintained while efficiently handling the transport requirements
of cargoes distributed throughout the cytoplasm. The tools we have developed to
quantitate global or local bias in a complex field of MTs can now be applied
widely to other oocytes and other cell types to test the generality of our
proposed biased random model for MT organization.
Materials and methods
Fly strains
Stocks were raised on standard cornmeal agar medium at 21 or 25°C. MT
markers used in this paper were EB1-GFP, EB1-mCherry expressed ubiquitously
(provided by H. Okhura, Wellcome Trust Centre for Cell Biology, University of
Edinburgh, Edinburgh, Scotland, UK), and Tau-GFP 65/167 (provided by D. St
Johnston, University of Cambridge, Cambridge, England, UK). Posterior cargo
markers used in this paper were osk:MCP-GFP, Staufen-RFP
(provided by D. St Johnston), and γ-tubulin37C–GFP (provided by S.
Endow, Duke University Medical Center, Durham, NC). PAR-1 mutant flies used in
this study (provided by D. St Johnston) were w-;par-1[6323]/CyO and
w-;par-1[w3]/CyO.
Tissue preparation and imaging
Flies were prepared, and ovaries were dissected and mounted for imaging as
previously described in Parton et al.
(2010). Imaging was performed either on a wide-field deconvolution
system (DeltaVision CORE) from Applied Precision (with a microscope [IX71;
Olympus], 100× 1.4 NA objective, 16-bit camera [Cascade II; Roper
Scientific], and standard Chroma filter sets), an OMX-V2 prototype microscope
designed by J.W. Sedat (University of California, San Francisco, San Francisco,
CA) and built by Applied Precision (Dobbie et
al., 2010), or a spinning-disc confocal microscope (UltraVIEW VoX;
PerkinElmer; with a microscope [IX81; Olympus], 60× 1.3 NA silicon
immersion objective, and an electron-multiplying charge-coupled device camera
[ImagEM; Hamamatsu Photonics]). Where required, image sequences were deconvolved
with the SoftWoRx Resolve 3D constrained iterative deconvolution algorithm
(Applied Precision). Basic image processing was performed with ImageJ (v1.43u;
National Institutes of Health).
Immunofluorescence
Flies were prepared as previously described in Parton et al. (2010). Ovaries were dissected into PBS, pH 6.0, with
8% EM-grade PFA. After 5 min, ovaries were then transferred to 200 µl
PBS, pH 7.0, with 8% EM-grade PFA, vortexed with 200 µl heptane to
permeabilize the tissue, and fixed for a further 10 min. Immunofluorescence
labeling was performed as in standard protocols (Cha et al., 2002; Rosales-Nieves et al., 2006). To detect tubulin modifications, we
used antibodies, previously shown to work on Drosophila
tissues, against acetylated tubulin (mouse monoclonal 6-11B-I; acetylated
α-tubulin; Sigma-Aldrich) and glutamylated tubulin (clone 1D5 mouse
hybridoma anti–Glu-α-tubulin; Synaptic Systems) at 1:250 and 1:300
dilutions, respectively (Warn et al.,
1990; Januschke et al.,
2006; Rosales-Nieves et al.,
2006). Primary antibodies were applied overnight at 4°C. The
secondary antibody donkey anti–mouseAlexa Fluor 594 (Invitrogen) was
applied at 1:500 for 2 h at room temperature. The tissue was mounted in
VECTASHIELD (Vector Laboratories) and imaged immediately by spinning-disc
confocal microscope (UltraVIEW VoX).
Colcemid treatment
The protocol for colcemid feeding was modified from Cha et al. (2002): flies were fed for 1 d after eclosure,
starved for 1 d, and then fed colcemid in yeast paste (200 µl of
0.1-mg/ml colcemid in distilled water added to 175 µl of dried yeast) for
4–6 h. Ovaries were dissected as normal.
Tracking and analysis
Through mid-oogenesis, the oocyte rapidly increases in size and accumulates yolk
in the cytoplasm. This makes imaging increasingly challenging beyond stage 8.
Furthermore, the EB1 protein is freely distributed in the cytoplasm as well as
being associated with MT plus ends. This, combined with autofluorescence from
the yolk, results in relatively poor contrast images of MT plus ends. Confocal
methods increased contrast but proved insufficiently sensitive to detect the low
EB1 signal. Wide-field deconvolution images were adequate for manual tracking of
EB1 trajectories but resisted automatic segmentation and tracking without
additional processing. For tracking analysis, oocytes expressing EB1-GFP were
imaged on a wide-field deconvolution system (DeltaVision CORE) over three z
planes twice per second with a pixel size of 97 nm. Image data were optionally
denoised using the patch-based denoising algorithm ND-SAFIR
(N-Dimensional–Structure Adaptative Filtering for Image Restoration;
Boulanger et al., 2008) implemented
in Priism (L. Shao, University of California, San Francisco, San Francisco, CA,
and J.W. Sedat). Time series were deconvolved, the three z planes were maximally
projected, and time points were equalized in SoftWoRx. Preprocessed image data
were exported to 16-bit TIF format using ImageJ (64 V1.41) and imported into
MATLAB (MathWorks).To obtain statistically relevant data for EB1 track directionality, a robust
automated tracking algorithm was developed that combined probabilistic
foreground extraction and Haar-like feature identification (referred to here as
probabilistic feature extraction; Fig. S4 and Fig. S5) implemented in MATLAB
(v7.9). Probabilistic feature extraction and tracking comprises four components
as follows: (1) local median equalization to correct for uneven illumination
while preserving local contrast; (2) foreground extraction by a probabilistic
temporal median filter to facilitate the discrimination of moving features from
a static background; (3) identification of EB1 foci using Haar-like feature
energy (adapted from Yang et al.,
2010); and (4) linkage into trajectories using the particle-matching
algorithm of Sbalzarini and Koumoutsakos
(2005) with a modified cost function to take account of the linear
path of EB1 tracks. For visual inspection, trajectories were output to a text
file formatted for the ImageJ Manual Tracking plugin.
Local median equalization.
To facilitate subsequent processing steps, all pixel values are normalized
according to the ratio between the median for the local neighborhood (five
times an EB1-GFP feature size, typically a 25 × 25–pixel
patch) and the median for the whole image stack.
Probabilistic temporal median filter.
To separate moving foreground features from the uneven static background, a
probabilistic temporal median filter was devised. Using the median value of
the neighboring few frames (where the number is defined here as W, as
described in the following paragraphs) as a model for the static background
has been proposed by several authors (Lo
and Velastin, 2001; Cucchiara
et al., 2003). Binary segmentation of pixels as either foreground
or background throws away intensity information and is prone to error in the
presence of noise. We therefore calculate a foreground probability image
instead. We find that this soft segmentation preserves some of the original
intensity information, facilitating subsequent processing steps.For the entire normalized image sequence (from the Local median equalization
section), a crude estimation of intensity variation caused by noise σ
was made: for each pixel, the SD over the first W frames and the last W
frames was calculated, and the mean of these values was taken as a measure
of σ. W was chosen to be three times the mean time taken for an
EB1-GFP particle to cross a pixel, typically n =
15.The background intensity level, Ibg(x,y,t), for each pixel at
position x,y and time t was estimated by calculating the median over the
surrounding W time points, i.e., from t − 0.5 × (W – 1)
to t + 0.5 × (W − 1). The more the intensity value
I(x,y,t) for a given pixel exceeds the static background value
Ibg(x,y,t), the more likely it is that a moving foreground
feature (i.e., an EB1-GFP particle) is crossing the pixel. Instead of
applying a binary cutoff, we therefore calculate a probability value
P(x,y,t), which is the probability that the pixel is not a background
feature:in which f(x,y,t) = [I(x,y,t) −
Ibg(x,y,t) − kσ]/σ is the excess
intensity above background normalized to 1 SD and Q(f) = 0.5 ×
(1 − erf(f/√2)) is the Q function, which is the tail
probability of the standard normal distribution. Eq. 1 results in a foreground
probability close to 1 when k = 0 and the intensity is 3 SDs or more
above the background level. To produce a probability image in which the
foreground features are not all saturated, k can instead be set to k
> 0, and we find that a value of k = 1 produces satisfactory
results for further analysis (Fig. S2 and Fig. S3).
Calculation of a particle probability image.
Haar-like features were first used by Viola
and Jones (2004) for face detection using a small number of
critical features. A complex scheme for particle detection using Haar-like
features was presented by Jiang et al.
(2007), but for our foreground probability images, we find we are
able to use a very simple segmentation criterion (adapted from Yang et al., 2010). Here, we
calculate the energy for a single, square Haar-like feature representing a
typical EB1-GFP particle (energy is calculated using pixel gray values as
described in Yang et al., 2010;
Eq. 1). For a particle of
diameter 2w + 1, the half-width of the Haar-like feature window is w
and the half-width of the internal feature is w − 1, in which a
typical value of w is w = 2. The resulting Haar-like feature energy
images can be rendered less noisy by application of one final filtering
step: a particle probability score is calculated as a Gaussian weighted
geometric mean of the highest Haar-like feature energy scores in the x,y,t
neighborhood of each pixel. The neighborhood radius was set to
vmax in x,y (vmax is the maximum velocity for a
particle) and one time point about the current time point t. Segmentation of
the resulting particle probability images can be achieved by applying a
simple highest percentile threshold (T; normally T ≈1% of the image
area corresponds to EB1 foci) because the probability is highest when
appropriately sized clusters of locally high intensity pixels persist within
a distance vmax over multiple frames.
Trajectory determination.
Trajectory determination was performed using the particle-matching algorithm
of Sbalzarini and Koumoutsakos
(2005) with a modified cost function:in which notation is as previously described
in Sbalzarini and Koumoutsakos
(2005), and the additional term δvec is the
change in vector associated with linking point pi with point
qj.The validity of the automated tracking algorithm for determining EB1 track
orientation was assessed by comparison with manually tracked data. The
ground truth was determined by manually assigning the start and end points
of all recognizable EB1 tracks over a 100-frame time series for both the
“raw” time series data and the processed, segmented image
data. Automatically determined and manually defined trajectories were
plotted for comparison (Fig. S3, A and B).To analyze the results of tracking, data were imported into the ParticleStats
environment (Hamilton et al.,
2010). ParticleStats directionality analysis tools were used to
generate EB1 track overlays, net local directionality maps, rose diagrams,
and radial histograms and to assess directional bias in EB1 tracks by the
Rayleigh test of uniformity (assuming a circular normal distribution) and
Watson two-sample test for comparing two samples of circular data (Mardia and Jupp, 2000). The validity
of the automated tracking algorithm to report directionality was also
assessed quantitatively by comparing the output from ParticleStats for the
manual versus the automatic tracking data (Fig. S3 C).
Online supplemental material
Fig. S1 shows that MTs in the oocyte lack posttranslational modifications
associated with increased stability (Fig.
2). Fig. S2 shows combined probabilistic foreground extraction and
adaptive nonlocal means filter for automatic segmentation to detect EB1 tracks.
Fig. S3 shows validation of automated detection and tracking of EB1 foci (see
Materials and methods). Fig. S4 follows a MT over time showing that dynamic MTs
support a consistent net bias in MT orientation (Fig. 4). Fig. S5 shows the distribution of γ-tubulin,
supporting the idea that nucleation occurs at discrete foci along the cortex but
is absent from the extreme posterior (Fig.
5). Video 1 shows a time series of Tau-GFP labeling dynamic MTs in
the Drosophila oocyte (Fig. 1
B). Video 2 shows the localization of EB1-mCherry to the plus ends of
Tau-GFP–labeled MTs. Video 3 shows EB1-GFP marking the plus ends of
Tau-GFP–labeled MTs, revealing the highly dynamic nature of MTs in the
oocyte (Fig. 2). Video 4 shows
Staufen-RFP moving on Tau-GFP–labeled MTs at the posterior of a stage 9
oocyte. Video 5 shows a zoomed region with a single Staufen particle moving
along an MT (Fig. 3 B). Video 6 shows MT
regrowth from discrete foci after UV inactivation of colcemid. Video 7 shows a
magnified view of individual EB1-labeled foci nucleating MT after UV treatment
(Fig. 5). Video 8 shows
“inappropriate” EB1-GFP–labeled foci nucleating MTs along
the cortex of the extreme posterior in a par-1 hypomorph (Fig. 6 A). Video 9 shows a magnified region
of Video 8, highlighting individual EB1 trajectories. Online supplemental
material is available at http://www.jcb.org/cgi/content/full/jcb.201103160/DC1.
Authors: Hélène Doerflinger; Nina Vogt; Isabel L Torres; Vincent Mirouse; Iris Koch; Christiane Nüsslein-Volhard; Daniel St Johnston Journal: Development Date: 2010-05 Impact factor: 6.868
Authors: D R Micklem; R Dasgupta; H Elliott; F Gergely; C Davidson; A Brand; A González-Reyes; D St Johnston Journal: Curr Biol Date: 1997-07-01 Impact factor: 10.834
Authors: Corey E Monteith; Matthew E Brunner; Inna Djagaeva; Anthony M Bielecki; Joshua M Deutsch; William M Saxton Journal: Biophys J Date: 2016-05-10 Impact factor: 4.033