Literature DB >> 31708163

Testing Models of mRNA Localization Reveals Robustness Regulated by Reducing Transport between Cells.

Jonathan U Harrison1, Richard M Parton2, Ilan Davis2, Ruth E Baker3.   

Abstract

Robust control of gene expression in both space and time is of central importance in the regulation of cellular processes and for multicellular development. However, the mechanisms by which robustness is achieved are generally not identified or well understood. For example, messenger RNA (mRNA) localization by molecular motor-driven transport is crucial for cell polarization in numerous contexts, but the regulatory mechanisms that enable this process to take place in the face of noise or significant perturbations are not fully understood. Here, we use a combined experimental-theoretical approach to characterize the robustness of gurken/transforming growth factor-α mRNA localization in Drosophila egg chambers, where the oocyte and 15 surrounding nurse cells are connected in a stereotypic network via intracellular bridges known as ring canals. We construct a mathematical model that encodes simplified descriptions of the range of steps involved in mRNA localization, including production and transport between and within cells until the final destination in the oocyte. Using Bayesian inference, we calibrate this model using quantitative single molecule fluorescence in situ hybridization data. By analyzing both the steady state and dynamic behaviors of the model, we provide estimates for the rates of different steps of the localization process as well as the extent of directional bias in transport through the ring canals. The model predicts that mRNA synthesis and transport must be tightly balanced to maintain robustness, a prediction that we tested experimentally using an overexpression mutant. Surprisingly, the overexpression mutant fails to display the anticipated degree of overaccumulation of mRNA in the oocyte predicted by the model. Through careful model-based analysis of quantitative data from the overexpression mutant, we show evidence of saturation of the transport of mRNA through ring canals. We conclude that this saturation engenders robustness of the localization process in the face of significant variation in the levels of mRNA synthesis.
Copyright © 2019. Published by Elsevier Inc.

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Year:  2019        PMID: 31708163      PMCID: PMC6895595          DOI: 10.1016/j.bpj.2019.10.025

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  39 in total

1.  Drosophila wingless and pair-rule transcripts localize apically by dynein-mediated transport of RNA particles.

Authors:  G S Wilkie; I Davis
Journal:  Cell       Date:  2001-04-20       Impact factor: 41.582

2.  Drosophila Cornichon acts as cargo receptor for ER export of the TGFalpha-like growth factor Gurken.

Authors:  Christian Bökel; Sajith Dass; Michaela Wilsch-Bräuninger; Siegfried Roth
Journal:  Development       Date:  2006-01-05       Impact factor: 6.868

Review 3.  Lighting up mRNA localization in Drosophila oogenesis.

Authors:  Agata N Becalska; Elizabeth R Gavis
Journal:  Development       Date:  2009-08       Impact factor: 6.868

4.  Visualization of single RNA transcripts in situ.

Authors:  A M Femino; F S Fay; K Fogarty; R H Singer
Journal:  Science       Date:  1998-04-24       Impact factor: 47.728

5.  Analysis of Active Transport by Fluorescence Recovery after Photobleaching.

Authors:  Maria-Veronica Ciocanel; Jill A Kreiling; James A Gagnon; Kimberly L Mowry; Björn Sandstede
Journal:  Biophys J       Date:  2017-04-25       Impact factor: 4.033

6.  Production of gurken in the nurse cells is sufficient for axis determination in the Drosophila oocyte.

Authors:  Lucía Cáceres; Laura A Nilson
Journal:  Development       Date:  2005-04-13       Impact factor: 6.868

7.  Collective Growth in a Small Cell Network.

Authors:  Jasmin Imran Alsous; Paul Villoutreix; Alexander M Berezhkovskii; Stanislav Y Shvartsman
Journal:  Curr Biol       Date:  2017-08-31       Impact factor: 10.834

8.  A PAR-1-dependent orientation gradient of dynamic microtubules directs posterior cargo transport in the Drosophila oocyte.

Authors:  Richard M Parton; Russell S Hamilton; Graeme Ball; Lei Yang; C Fiona Cullen; Weiping Lu; Hiroyuki Ohkura; Ilan Davis
Journal:  J Cell Biol       Date:  2011-07-11       Impact factor: 10.539

9.  Entropic effects in cell lineage tree packings.

Authors:  Jasmin Imran Alsous; Paul Villoutreix; Norbert Stoop; Stanislav Y Shvartsman; Jӧrn Dunkel
Journal:  Nat Phys       Date:  2018-07-16       Impact factor: 20.034

10.  The dynamics of fluorescently labeled endogenous gurken mRNA in Drosophila.

Authors:  Angela M Jaramillo; Timothy T Weil; Joseph Goodhouse; Elizabeth R Gavis; Trudi Schupbach
Journal:  J Cell Sci       Date:  2008-02-26       Impact factor: 5.285

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  1 in total

Review 1.  Quantitative models for building and growing fated small cell networks.

Authors:  Rocky Diegmiller; Hayden Nunley; Stanislav Y Shvartsman; Jasmin Imran Alsous
Journal:  Interface Focus       Date:  2022-06-10       Impact factor: 4.661

  1 in total

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