| Literature DB >> 21741338 |
Megan L Coghlan1, Nicole E White, Liza Parkinson, James Haile, Peter B S Spencer, Michael Bunce.
Abstract
Psittaciformes (parrots and cockatoos) are charismatic birds, their plumage and capacity for learning make them highly sought after pets. The illegal trade in parrots and cockatoos poses a serious threat to the viability of native populations; in addition, species transported to non-endemic areas may potentially vector disease and genetically 'pollute' local native avifauna. To reduce the logistical difficulties associated with trafficking live birds, smugglers often transport eggs. This creates a problem for authorities in elucidating accurate species identification without the laborious task of incubation and hand rearing until a morphological identification can be made. Here, we use 99 avian eggs seized from carriers coming into and within Australia, as a result of suspected illegal trade. We investigate and evaluate the use of mitochondrial DNA (mtDNA) to accurately identify eggs to family, genus or species level. However, Identification of a species based on percentage mtDNA similarities is difficult without good representations of the inter- and intra-levels of species variation. Based on the available reference database, we were able to identify 52% of the eggs to species level. Of those, 10 species from eight genera were detected, all of which belong to the parrot (Psittacidae) and cockatoo (Cacatuidae) families. Of the remaining 48%, a further 36% of eggs were identified to genus level, and 12% identified to family level using our assignment criteria. Clearly the lack of validated DNA reference sequences is hindering our ability to accurately assign a species identity, and accordingly, we advocate that more attention needs to be paid to establishing validated, multi locus mtDNA reference databases for exotic birds that can both assist in genetic identifications and withstand legal scrutiny.Entities:
Mesh:
Substances:
Year: 2011 PMID: 21741338 PMCID: PMC7102845 DOI: 10.1016/j.fsigen.2011.06.006
Source DB: PubMed Journal: Forensic Sci Int Genet ISSN: 1872-4973 Impact factor: 4.882
Fig. 1(A) An alleged trafficker wearing a purpose built body vest containing eggs belonging to exotic birds. (B) Seized egg with the letters “B & G” written in pencil by the bird breeder (photo credit: Australian Customs and Border Protection Service). As part of this study this egg was genetically identified as a Blue and Gold macaw (Ara ararauna). (C) Photo of an autoclaved egg where a portion of the eggshell was dissected to provide a sample for a DNA based species identification.
Samples identified to species level, conservation status, and available reference sequences [7], [22], [27], [28], [29]. Cytb: cytochrome b gene; 12S: mitochondrial 12S ribosomal RNA gene; COI indicates the commonly used barcoding gene cytochrome oxidase 1 [30]; BOLD, barcode of life database [30].
| Common name (species name) | No. of eggs assigned ( | CITES appendix listing and red list status | Extant range | No. of GenBank/BOLD reference sequences available | ||
|---|---|---|---|---|---|---|
| Cytb | 12S | COI (BOLD) | ||||
| Eclectus parrot ( | 9 | II (Least concern) | Melanesian islands, Indonesia, Australia | 3 | 1 | 3 |
| Blue and yellow macaw ( | 3 | II (Least concern) | South America | 3 | 4 | 15 |
| Black-capped lory ( | 10 | II (Least concern) | New Guinea | 1 | 1 | 1 |
| Dusky lory ( | 3 | II (Least concern) | Indonesia and PNG | 2 (1 | 0 | 0 |
| Rainbow lorikeet ( | 6 | II (Least concern) | Australasia | 3 (2 | 0 | 5 |
| Eastern rosella ( | 4 | II (Least concern) | Australia | 2 (3 | 1 | 5 |
| Black-capped conure ( | 3 | II (Least concern) | South America | 2 | 0 | 1 |
| Umbrella cockatoo ( | 2 | II (Vulnerable) | Indonesian Islands | 6 | 0 | 0 |
| Sulphur-crested cockatoo ( | 6 | II (Least concern) | Australia and New Guinea | 77 (1 | 0 | 8 |
| Yellow-crested cockatoo ( | 1 | I (Critically endangered) | Timor-Leste and Indonesian Islands | 2 | 0 | 0 |
Sequence from an unpublished source.
Selected Psittaciformes groups popular in the illegal bird trade and the percentage of species with available reference sequences on GenBank at time of publication [22], [27], [28], [29]. This table includes only selected extant species and does not include all genera and species possible within a given group. Cytb: cytochrome b gene; 12S: mitochondrial 12S ribosomal RNA gene; COI indicates the commonly used barcoding gene cytochrome oxidase 1 [30].
| Subfamily | General groups | Number of genera | Number of species | % of species with reference sequences (in GenBank) | ||
|---|---|---|---|---|---|---|
| Cytb | 12S | COI | ||||
| Cacatuinae | Cockatoos | 3 | 18 | 61 | 17 | 17 |
| Loriinae | Lories and lorikeets | 6 | 40 | 33 | 3 | 15 |
| Psittacinae | Neotropical parrots | 10 | 89 | 62 | 56 | 55 |
| Australian parrots | 5 | 16 | 25 | 25 | 25 | |
| South-east Asian parrots | 5 | 8 | 50 | 38 | 38 | |
| Afrotropical parrots | 2 | 10 | 60 | 20 | 30 | |