Literature DB >> 21730287

Inhibition of nonsense-mediated RNA decay by the tumor microenvironment promotes tumorigenesis.

Ding Wang1, Jiri Zavadil, Leenus Martin, Fabio Parisi, Eugene Friedman, David Levy, Heather Harding, David Ron, Lawrence B Gardner.   

Abstract

While nonsense-mediated RNA decay (NMD) is an established mechanism to rapidly degrade select transcripts, the physiological regulation and biological significance of NMD are not well characterized. We previously demonstrated that NMD is inhibited in hypoxic cells. Here we show that the phosphorylation of the α subunit of eukaryotic initiation factor 2 (eIF2α) translation initiation factor by a variety of cellular stresses leads to the inhibition of NMD and that eIF2α phosphorylation and NMD inhibition occur in tumors. To explore the significance of this NMD regulation, we used an unbiased approach to identify approximately 750 NMD-targeted mRNAs and found that these mRNAs are overrepresented in stress response and tumor-promoting pathways. Consistent with these findings, the inhibition of NMD promotes cellular resistance to endoplasmic reticulum stress and encourages tumor formation. The transcriptional and translational regulations of gene expression by the microenvironment are established mechanisms by which tumor cells adapt to stress. These data indicate that NMD inhibition by the tumor microenvironment is also an important mechanism to dynamically regulate genes critical for the response to cellular stress and tumorigenesis.

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Year:  2011        PMID: 21730287      PMCID: PMC3165546          DOI: 10.1128/MCB.05704-11

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  41 in total

1.  Comparison of tumor and normal tissue oxygen tension measurements using OxyLite or microelectrodes in rodents.

Authors:  R D Braun; J L Lanzen; S A Snyder; M W Dewhirst
Journal:  Am J Physiol Heart Circ Physiol       Date:  2001-06       Impact factor: 4.733

Review 2.  Nonsense-mediated RNA decay regulation by cellular stress: implications for tumorigenesis.

Authors:  Lawrence B Gardner
Journal:  Mol Cancer Res       Date:  2010-02-23       Impact factor: 5.852

3.  A strategy for disease gene identification through nonsense-mediated mRNA decay inhibition.

Authors:  E N Noensie; H C Dietz
Journal:  Nat Biotechnol       Date:  2001-05       Impact factor: 54.908

4.  Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.

Authors:  Da Wei Huang; Brad T Sherman; Richard A Lempicki
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

5.  The GCN2-ATF4 pathway is critical for tumour cell survival and proliferation in response to nutrient deprivation.

Authors:  Jiangbin Ye; Monika Kumanova; Lori S Hart; Kelly Sloane; Haiyan Zhang; Diego N De Panis; Ekaterina Bobrovnikova-Marjon; J Alan Diehl; David Ron; Constantinos Koumenis
Journal:  EMBO J       Date:  2010-05-14       Impact factor: 11.598

6.  Upf1 phosphorylation triggers translational repression during nonsense-mediated mRNA decay.

Authors:  Olaf Isken; Yoon Ki Kim; Nao Hosoda; Greg L Mayeur; John W B Hershey; Lynne E Maquat
Journal:  Cell       Date:  2008-04-18       Impact factor: 41.582

Review 7.  The multiple lives of NMD factors: balancing roles in gene and genome regulation.

Authors:  Olaf Isken; Lynne E Maquat
Journal:  Nat Rev Genet       Date:  2008-09       Impact factor: 53.242

8.  Inhibition of RNA-dependent protein kinase (PKR) leads to cancer cell death and increases chemosensitivity.

Authors:  Abujiang Pataer; Stephen G Swisher; Jack A Roth; Christopher J Logothetis; Paul G Corn
Journal:  Cancer Biol Ther       Date:  2009-02-08       Impact factor: 4.742

9.  Phosphorylation of eukaryotic translation initiation factor 2alpha coordinates rRNA transcription and translation inhibition during endoplasmic reticulum stress.

Authors:  Jenny B DuRose; Donalyn Scheuner; Randal J Kaufman; Lawrence I Rothblum; Maho Niwa
Journal:  Mol Cell Biol       Date:  2009-05-26       Impact factor: 4.272

Review 10.  RNA-binding proteins implicated in the hypoxic response.

Authors:  Kiyoshi Masuda; Kotb Abdelmohsen; Myriam Gorospe
Journal:  J Cell Mol Med       Date:  2009-07-06       Impact factor: 5.310

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  74 in total

Review 1.  Nonsense-mediated mRNA decay: an intricate machinery that shapes transcriptomes.

Authors:  Søren Lykke-Andersen; Torben Heick Jensen
Journal:  Nat Rev Mol Cell Biol       Date:  2015-09-23       Impact factor: 94.444

2.  A novel role for hSMG-1 in stress granule formation.

Authors:  James A L Brown; Tara L Roberts; Renee Richards; Rick Woods; Geoff Birrell; Y C Lim; Shigeo Ohno; Akio Yamashita; Robert T Abraham; Nuri Gueven; Martin F Lavin
Journal:  Mol Cell Biol       Date:  2011-09-12       Impact factor: 4.272

3.  RNA metabolism: putting the brake on the UPR.

Authors:  Amado Carreras-Sureda; Claudio Hetz
Journal:  EMBO Rep       Date:  2015-03-25       Impact factor: 8.807

4.  The unfolded protein response is shaped by the NMD pathway.

Authors:  Rachid Karam; Chih-Hong Lou; Heike Kroeger; Lulu Huang; Jonathan H Lin; Miles F Wilkinson
Journal:  EMBO Rep       Date:  2015-03-25       Impact factor: 8.807

5.  Cellular adaptation to nutrient deprivation: crosstalk between the mTORC1 and eIF2α signaling pathways and implications for autophagy.

Authors:  Jordan C Wengrod; Lawrence B Gardner
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

Review 6.  Stress and the nonsense-mediated RNA decay pathway.

Authors:  Alexandra E Goetz; Miles Wilkinson
Journal:  Cell Mol Life Sci       Date:  2017-05-13       Impact factor: 9.261

7.  Identification of hundreds of novel UPF1 target transcripts by direct determination of whole transcriptome stability.

Authors:  Hidenori Tani; Naoto Imamachi; Kazi Abdus Salam; Rena Mizutani; Kenichi Ijiri; Takuma Irie; Tetsushi Yada; Yutaka Suzuki; Nobuyoshi Akimitsu
Journal:  RNA Biol       Date:  2012-10-12       Impact factor: 4.652

8.  Posttranscriptional control of the stem cell and neurogenic programs by the nonsense-mediated RNA decay pathway.

Authors:  Chih H Lou; Ada Shao; Eleen Y Shum; Josh L Espinoza; Lulu Huang; Rachid Karam; Miles F Wilkinson
Journal:  Cell Rep       Date:  2014-02-13       Impact factor: 9.423

9.  Integrin α3β1 controls mRNA splicing that determines Cox-2 mRNA stability in breast cancer cells.

Authors:  Sita Subbaram; Scott P Lyons; Kimberly B Svenson; Sean L Hammond; Lorena G McCabe; Sridar V Chittur; C Michael DiPersio
Journal:  J Cell Sci       Date:  2014-01-16       Impact factor: 5.285

Review 10.  Non-coding transcript variants of protein-coding genes - what are they good for?

Authors:  Sonam Dhamija; Manoj B Menon
Journal:  RNA Biol       Date:  2018-09-10       Impact factor: 4.652

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