Literature DB >> 18606306

Long-range LD can confound genome scans in admixed populations.

Alkes L Price, Michael E Weale, Nick Patterson, Simon R Myers, Anna C Need, Kevin V Shianna, Dongliang Ge, Jerome I Rotter, Esther Torres, Kent D Taylor, David B Goldstein, David Reich.   

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Year:  2008        PMID: 18606306      PMCID: PMC2443852          DOI: 10.1016/j.ajhg.2008.06.005

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


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  11 in total

1.  Highly parallel SNP genotyping.

Authors:  J B Fan; A Oliphant; R Shen; B G Kermani; F Garcia; K L Gunderson; M Hansen; F Steemers; S L Butler; P Deloukas; L Galver; S Hunt; C McBride; M Bibikova; T Rubano; J Chen; E Wickham; D Doucet; W Chang; D Campbell; B Zhang; S Kruglyak; D Bentley; J Haas; P Rigault; L Zhou; J Stuelpnagel; M S Chee
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2003

2.  A high-density admixture map for disease gene discovery in african americans.

Authors:  Michael W Smith; Nick Patterson; James A Lautenberger; Ann L Truelove; Gavin J McDonald; Alicja Waliszewska; Bailey D Kessing; Michael J Malasky; Charles Scafe; Ernest Le; Philip L De Jager; Andre A Mignault; Zeng Yi; Guy De The; Myron Essex; Jean-Louis Sankale; Jason H Moore; Kwabena Poku; John P Phair; James J Goedert; David Vlahov; Scott M Williams; Sarah A Tishkoff; Cheryl A Winkler; Francisco M De La Vega; Trevor Woodage; John J Sninsky; David A Hafler; David Altshuler; Dennis A Gilbert; Stephen J O'Brien; David Reich
Journal:  Am J Hum Genet       Date:  2004-04-14       Impact factor: 11.025

3.  Reconstructing genetic ancestry blocks in admixed individuals.

Authors:  Hua Tang; Marc Coram; Pei Wang; Xiaofeng Zhu; Neil Risch
Journal:  Am J Hum Genet       Date:  2006-05-17       Impact factor: 11.025

4.  Principal components analysis corrects for stratification in genome-wide association studies.

Authors:  Alkes L Price; Nick J Patterson; Robert M Plenge; Michael E Weinblatt; Nancy A Shadick; David Reich
Journal:  Nat Genet       Date:  2006-07-23       Impact factor: 38.330

5.  A genomewide admixture map for Latino populations.

Authors:  Alkes L Price; Nick Patterson; Fuli Yu; David R Cox; Alicja Waliszewska; Gavin J McDonald; Arti Tandon; Christine Schirmer; Julie Neubauer; Gabriel Bedoya; Constanza Duque; Alberto Villegas; Maria Catira Bortolini; Francisco M Salzano; Carla Gallo; Guido Mazzotti; Marcela Tello-Ruiz; Laura Riba; Carlos A Aguilar-Salinas; Samuel Canizales-Quinteros; Marta Menjivar; William Klitz; Brian Henderson; Christopher A Haiman; Cheryl Winkler; Teresa Tusie-Luna; Andres Ruiz-Linares; David Reich
Journal:  Am J Hum Genet       Date:  2007-04-13       Impact factor: 11.025

6.  Recent genetic selection in the ancestral admixture of Puerto Ricans.

Authors:  Hua Tang; Shweta Choudhry; Rui Mei; Martin Morgan; William Rodriguez-Cintron; Esteban González Burchard; Neil J Risch
Journal:  Am J Hum Genet       Date:  2007-08-01       Impact factor: 11.025

7.  A whole-genome admixture scan finds a candidate locus for multiple sclerosis susceptibility.

Authors:  David Reich; Nick Patterson; Philip L De Jager; Gavin J McDonald; Alicja Waliszewska; Arti Tandon; Robin R Lincoln; Cari DeLoa; Scott A Fruhan; Philippe Cabre; Odile Bera; Gilbert Semana; M Ann Kelly; David A Francis; Kristin Ardlie; Omar Khan; Bruce A C Cree; Stephen L Hauser; Jorge R Oksenberg; David A Hafler
Journal:  Nat Genet       Date:  2005-09-25       Impact factor: 38.330

8.  Methods for high-density admixture mapping of disease genes.

Authors:  Nick Patterson; Neil Hattangadi; Barton Lane; Kirk E Lohmueller; David A Hafler; Jorge R Oksenberg; Stephen L Hauser; Michael W Smith; Stephen J O'Brien; David Altshuler; Mark J Daly; David Reich
Journal:  Am J Hum Genet       Date:  2004-04-14       Impact factor: 11.025

Review 9.  Haplotype blocks and linkage disequilibrium in the human genome.

Authors:  Jeffrey D Wall; Jonathan K Pritchard
Journal:  Nat Rev Genet       Date:  2003-08       Impact factor: 53.242

10.  Population structure and eigenanalysis.

Authors:  Nick Patterson; Alkes L Price; David Reich
Journal:  PLoS Genet       Date:  2006-12       Impact factor: 5.917

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  170 in total

1.  Principal-component analysis for assessment of population stratification in mitochondrial medical genetics.

Authors:  Alessandro Biffi; Christopher D Anderson; Michael A Nalls; Rosanna Rahman; Akshata Sonni; Lynelle Cortellini; Natalia S Rost; Mar Matarin; Dena G Hernandez; Anna Plourde; Paul I W de Bakker; Owen A Ross; Steven M Greenberg; Karen L Furie; James F Meschia; Andrew B Singleton; Richa Saxena; Jonathan Rosand
Journal:  Am J Hum Genet       Date:  2010-05-27       Impact factor: 11.025

2.  A genome-wide association study in Han Chinese identifies new susceptibility loci for ankylosing spondylitis.

Authors:  Zhiming Lin; Jin-Xin Bei; Meixin Shen; Qiuxia Li; Zetao Liao; Yanli Zhang; Qing Lv; Qiujing Wei; Hui-Qi Low; Yun-Miao Guo; Shuangyan Cao; Mingcan Yang; Zaiying Hu; Manlong Xu; Xinwei Wang; Yanlin Wei; Li Li; Chao Li; Tianwang Li; Jianlin Huang; Yunfeng Pan; Ou Jin; Yuqiong Wu; Jing Wu; Zishi Guo; Peigen He; Shaoxian Hu; Husheng Wu; Hui Song; Feng Zhan; Shengyun Liu; Guanmin Gao; Zhangsuo Liu; Yinong Li; Changhong Xiao; Juan Li; Zhizhong Ye; Weizhen He; Dongzhou Liu; Lingxun Shen; Anbin Huang; Henglian Wu; Yi Tao; Xieping Pan; Buyun Yu; E Shyong Tai; Yi-Xin Zeng; Ee Chee Ren; Yan Shen; Jianjun Liu; Jieruo Gu
Journal:  Nat Genet       Date:  2011-12-04       Impact factor: 38.330

3.  Genome-wide detection of natural selection in African Americans pre- and post-admixture.

Authors:  Wenfei Jin; Shuhua Xu; Haifeng Wang; Yongguo Yu; Yiping Shen; Bailin Wu; Li Jin
Journal:  Genome Res       Date:  2011-11-29       Impact factor: 9.043

4.  Robust estimation of local genetic ancestry in admixed populations using a nonparametric Bayesian approach.

Authors:  Kyung-Ah Sohn; Zoubin Ghahramani; Eric P Xing
Journal:  Genetics       Date:  2012-05-29       Impact factor: 4.562

5.  Using identity by descent estimation with dense genotype data to detect positive selection.

Authors:  Lide Han; Mark Abney
Journal:  Eur J Hum Genet       Date:  2012-07-11       Impact factor: 4.246

6.  NordicDB: a Nordic pool and portal for genome-wide control data.

Authors:  Monica Leu; Keith Humphreys; Ida Surakka; Emil Rehnberg; Juha Muilu; Päivi Rosenström; Peter Almgren; Juha Jääskeläinen; Richard P Lifton; Kirsten Ohm Kyvik; Jaakko Kaprio; Nancy L Pedersen; Aarno Palotie; Per Hall; Henrik Grönberg; Leif Groop; Leena Peltonen; Juni Palmgren; Samuli Ripatti
Journal:  Eur J Hum Genet       Date:  2010-07-28       Impact factor: 4.246

7.  Genes predict village of origin in rural Europe.

Authors:  Colm O'Dushlaine; Ruth McQuillan; Michael E Weale; Daniel J M Crouch; Asa Johansson; Yurii Aulchenko; Christopher S Franklin; Ozren Polašek; Christian Fuchsberger; Aiden Corvin; Andrew A Hicks; Veronique Vitart; Caroline Hayward; Sarah H Wild; Thomas Meitinger; Cornelia M van Duijn; Ulf Gyllensten; Alan F Wright; Harry Campbell; Peter P Pramstaller; Igor Rudan; James F Wilson
Journal:  Eur J Hum Genet       Date:  2010-06-23       Impact factor: 4.246

8.  Utilizing the Jaccard index to reveal population stratification in sequencing data: a simulation study and an application to the 1000 Genomes Project.

Authors:  Dmitry Prokopenko; Julian Hecker; Edwin K Silverman; Marcello Pagano; Markus M Nöthen; Christian Dina; Christoph Lange; Heide Loehlein Fier
Journal:  Bioinformatics       Date:  2015-12-31       Impact factor: 6.937

9.  Ancestry informative marker panels for African Americans based on subsets of commercially available SNP arrays.

Authors:  Arti Tandon; Nick Patterson; David Reich
Journal:  Genet Epidemiol       Date:  2011-01       Impact factor: 2.135

10.  Examining the independent and joint effects of molecular genetic liability and environmental exposures in schizophrenia: results from the EUGEI study.

Authors:  Sinan Guloksuz; Lotta-Katrin Pries; Philippe Delespaul; Gunter Kenis; Jurjen J Luykx; Bochao D Lin; Alexander L Richards; Berna Akdede; Tolga Binbay; Vesile Altınyazar; Berna Yalınçetin; Güvem Gümüş-Akay; Burçin Cihan; Haldun Soygür; Halis Ulaş; EylemŞahin Cankurtaran; Semra Ulusoy Kaymak; Marina M Mihaljevic; Sanja Andric Petrovic; Tijana Mirjanic; Miguel Bernardo; Bibiana Cabrera; Julio Bobes; Pilar A Saiz; María Paz García-Portilla; Julio Sanjuan; Eduardo J Aguilar; José Luis Santos; Estela Jiménez-López; Manuel Arrojo; Angel Carracedo; Gonzalo López; Javier González-Peñas; Mara Parellada; Nadja P Maric; Cem Atbaşog Lu; Alp Ucok; Köksal Alptekin; Meram Can Saka; Celso Arango; Michael O'Donovan; Bart P F Rutten; Jim van Os
Journal:  World Psychiatry       Date:  2019-06       Impact factor: 49.548

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