Literature DB >> 21705610

Genome of the cyanobacterium Microcoleus vaginatus FGP-2, a photosynthetic ecosystem engineer of arid land soil biocrusts worldwide.

Shawn R Starkenburg1, Krista G Reitenga, Tracey Freitas, Shannon Johnson, Patrick S G Chain, Ferran Garcia-Pichel, Cheryl R Kuske.   

Abstract

The filamentous cyanobacterium Microcoleus vaginatusis found in arid land soils worldwide. The genome of M. vaginatus strain FGP-2 allows exploration of genes involved in photosynthesis, desiccation tolerance, alkane production, and other features contributing to this organism's ability to function as a major component of biological soil crusts in arid lands.

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Year:  2011        PMID： 21705610      PMCID： PMC3165530          DOI： 10.1128/JB.05138-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

1.  [Branched alkanes and other apolar compounds produced by the cyanobacterium Microcoleus vaginatus from the Negev desert].

Authors:  V M Dembitskiĭ; I Dor; I Shkrob; M Aki
Journal:  Bioorg Khim       Date:  2001 Mar-Apr

Review 2.  Molecular biology of cyanobacterial salt acclimation.

Authors:  Martin Hagemann
Journal:  FEMS Microbiol Rev       Date:  2011-01       Impact factor: 16.408

3.  Radiative and non-radiative charge recombination pathways in Photosystem II studied by thermoluminescence and chlorophyll fluorescence in the cyanobacterium Synechocystis 6803.

Authors:  Krisztián Cser; Imre Vass
Journal:  Biochim Biophys Acta       Date:  2007-02-07

4.  Genomics. Genome project standards in a new era of sequencing.

Authors:  P S G Chain; D V Grafham; R S Fulton; M G Fitzgerald; J Hostetler; D Muzny; J Ali; B Birren; D C Bruce; C Buhay; J R Cole; Y Ding; S Dugan; D Field; G M Garrity; R Gibbs; T Graves; C S Han; S H Harrison; S Highlander; P Hugenholtz; H M Khouri; C D Kodira; E Kolker; N C Kyrpides; D Lang; A Lapidus; S A Malfatti; V Markowitz; T Metha; K E Nelson; J Parkhill; S Pitluck; X Qin; T D Read; J Schmutz; S Sozhamannan; P Sterk; R L Strausberg; G Sutton; N R Thomson; J M Tiedje; G Weinstock; A Wollam; J C Detter
Journal:  Science       Date:  2009-10-09       Impact factor: 47.728

5.  Light-induced changes within photosystem II protects Microcoleus sp. in biological desert sand crusts against excess light.

Authors:  Itzhak Ohad; Hagai Raanan; Nir Keren; Dan Tchernov; Aaron Kaplan
Journal:  PLoS One       Date:  2010-06-08       Impact factor: 3.240

6.  Three pathways for trehalose metabolism in Corynebacterium glutamicum ATCC13032 and their significance in response to osmotic stress.

Authors:  Andreas Wolf; Reinhard Krämer; Susanne Morbach
Journal:  Mol Microbiol       Date:  2003-08       Impact factor: 3.501

7.  Phenotypic and phylogenetic analyses show Microcoleus chthonoplastes to be a cosmopolitan cyanobacterium.

Authors:  F Garcia-Pichel; L Prufert-Bebout; G Muyzer
Journal:  Appl Environ Microbiol       Date:  1996-09       Impact factor: 4.792

8.  Electron transport regulates exchange of two forms of photosystem II D1 protein in the cyanobacterium Synechococcus.

Authors:  D Campbell; G Zhou; P Gustafsson; G Oquist; A K Clarke
Journal:  EMBO J       Date:  1995-11-15       Impact factor: 11.598

9.  Improving the specificity of high-throughput ortholog prediction.

Authors:  Debra L Fulton; Yvonne Y Li; Matthew R Laird; Benjamin G S Horsman; Fiona M Roche; Fiona S L Brinkman
Journal:  BMC Bioinformatics       Date:  2006-05-28       Impact factor: 3.169

10.  The evolution of a capacity to build supra-cellular ropes enabled filamentous cyanobacteria to colonize highly erodible substrates.

Authors:  Ferran Garcia-Pichel; Martin F Wojciechowski
Journal:  PLoS One       Date:  2009-11-17       Impact factor: 3.240
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  13 in total

1.  Non-cyanobacterial diazotrophs mediate dinitrogen fixation in biological soil crusts during early crust formation.

Authors:  Charles Pepe-Ranney; Chantal Koechli; Ruth Potrafka; Cheryl Andam; Erin Eggleston; Ferran Garcia-Pichel; Daniel H Buckley
Journal:  ISME J       Date:  2015-06-26       Impact factor: 10.302

2.  Exometabolite niche partitioning among sympatric soil bacteria.

Authors:  Richard Baran; Eoin L Brodie; Jazmine Mayberry-Lewis; Eric Hummel; Ulisses Nunes Da Rocha; Romy Chakraborty; Benjamin P Bowen; Ulas Karaoz; Hinsby Cadillo-Quiroz; Ferran Garcia-Pichel; Trent R Northen
Journal:  Nat Commun       Date:  2015-09-22       Impact factor: 14.919

3.  Drylands soil bacterial community is affected by land use change and different irrigation practices in the Mezquital Valley, Mexico.

Authors:  Kathia Lüneberg; Dominik Schneider; Christina Siebe; Rolf Daniel
Journal:  Sci Rep       Date:  2018-01-23       Impact factor: 4.379

4.  A novel cyanobacterial geosmin producer, revising GeoA distribution and dispersion patterns in Bacteria.

Authors:  Catarina Churro; Ana P Semedo-Aguiar; Alexandra D Silva; Jose B Pereira-Leal; Ricardo B Leite
Journal:  Sci Rep       Date:  2020-05-26       Impact factor: 4.379

5.  A symbiotic nutrient exchange within the cyanosphere microbiome of the biocrust cyanobacterium, Microcoleus vaginatus.

Authors:  Corey Nelson; Ana Giraldo-Silva; Ferran Garcia-Pichel
Journal:  ISME J       Date:  2020-09-23       Impact factor: 10.302

6.  Functional genomics of novel secondary metabolites from diverse cyanobacteria using untargeted metabolomics.

Authors:  Richard Baran; Natalia N Ivanova; Nick Jose; Ferran Garcia-Pichel; Nikos C Kyrpides; Muriel Gugger; Trent R Northen
Journal:  Mar Drugs       Date:  2013-09-30       Impact factor: 5.118

7.  Comparative genomic analyses of the cyanobacterium, Lyngbya aestuarii BL J, a powerful hydrogen producer.

Authors:  Ankita Kothari; Michael Vaughn; Ferran Garcia-Pichel
Journal:  Front Microbiol       Date:  2013-12-11       Impact factor: 5.640

8.  Microbial analyses of ancient ice core sections from greenland and antarctica.

Authors:  Caitlin Knowlton; Ram Veerapaneni; Tom D'Elia; Scott O Rogers
Journal:  Biology (Basel)       Date:  2013-01-25

9.  Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust.

Authors:  Lara Rajeev; Ulisses Nunes da Rocha; Niels Klitgord; Eric G Luning; Julian Fortney; Seth D Axen; Patrick M Shih; Nicholas J Bouskill; Benjamin P Bowen; Cheryl A Kerfeld; Ferran Garcia-Pichel; Eoin L Brodie; Trent R Northen; Aindrila Mukhopadhyay
Journal:  ISME J       Date:  2013-06-06       Impact factor: 10.302

10.  Chronic Physical Disturbance Substantially Alters the Response of Biological Soil Crusts to a Wetting Pulse, as Characterized by Metatranscriptomic Sequencing.

Authors:  Blaire Steven; Jayne Belnap; Cheryl R Kuske
Journal:  Front Microbiol       Date:  2018-10-08       Impact factor: 5.640
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