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Literature DB >> 19815760

Genomics. Genome project standards in a new era of sequencing.

P S G Chain¹, D V Grafham, R S Fulton, M G Fitzgerald, J Hostetler, D Muzny, J Ali, B Birren, D C Bruce, C Buhay, J R Cole, Y Ding, S Dugan, D Field, G M Garrity, R Gibbs, T Graves, C S Han, S H Harrison, S Highlander, P Hugenholtz, H M Khouri, C D Kodira, E Kolker, N C Kyrpides, D Lang, A Lapidus, S A Malfatti, V Markowitz, T Metha, K E Nelson, J Parkhill, S Pitluck, X Qin, T D Read, J Schmutz, S Sozhamannan, P Sterk, R L Strausberg, G Sutton, N R Thomson, J M Tiedje, G Weinstock, A Wollam, J C Detter.

Abstract

Entities: Disease

Mesh：

Year: 2009 PMID： 19815760 PMCID： PMC3854948 DOI： 10.1126/science.1180614

Source DB: PubMed Journal: Science ISSN： 0036-8075 Impact factor: 47.728

× No keyword cloud information.

4 in total

1. An intermediate grade of finished genomic sequence suitable for comparative analyses.

Authors: Robert W Blakesley; Nancy F Hansen; James C Mullikin; Pamela J Thomas; Jennifer C McDowell; Baishali Maskeri; Alice C Young; Beatrice Benjamin; Shelise Y Brooks; Bradley I Coleman; Jyoti Gupta; Shi-Ling Ho; Eric M Karlins; Quino L Maduro; Sirintorn Stantripop; Cyrus Tsurgeon; Jennifer L Vogt; Michelle A Walker; Catherine A Masiello; Xiaobin Guan; Gerard G Bouffard; Eric D Green
Journal: Genome Res Date: 2004-10-12 Impact factor: 9.043

2. The minimum information about a genome sequence (MIGS) specification.

Authors: Dawn Field; George Garrity; Tanya Gray; Norman Morrison; Jeremy Selengut; Peter Sterk; Tatiana Tatusova; Nicholas Thomson; Michael J Allen; Samuel V Angiuoli; Michael Ashburner; Nelson Axelrod; Sandra Baldauf; Stuart Ballard; Jeffrey Boore; Guy Cochrane; James Cole; Peter Dawyndt; Paul De Vos; Claude DePamphilis; Robert Edwards; Nadeem Faruque; Robert Feldman; Jack Gilbert; Paul Gilna; Frank Oliver Glöckner; Philip Goldstein; Robert Guralnick; Dan Haft; David Hancock; Henning Hermjakob; Christiane Hertz-Fowler; Phil Hugenholtz; Ian Joint; Leonid Kagan; Matthew Kane; Jessie Kennedy; George Kowalchuk; Renzo Kottmann; Eugene Kolker; Saul Kravitz; Nikos Kyrpides; Jim Leebens-Mack; Suzanna E Lewis; Kelvin Li; Allyson L Lister; Phillip Lord; Natalia Maltsev; Victor Markowitz; Jennifer Martiny; Barbara Methe; Ilene Mizrachi; Richard Moxon; Karen Nelson; Julian Parkhill; Lita Proctor; Owen White; Susanna-Assunta Sansone; Andrew Spiers; Robert Stevens; Paul Swift; Chris Taylor; Yoshio Tateno; Adrian Tett; Sarah Turner; David Ussery; Bob Vaughan; Naomi Ward; Trish Whetzel; Ingio San Gil; Gareth Wilson; Anil Wipat
Journal: Nat Biotechnol Date: 2008-05 Impact factor: 54.908

3. The Sequence Ontology: a tool for the unification of genome annotations.

Authors: Karen Eilbeck; Suzanna E Lewis; Christopher J Mungall; Mark Yandell; Lincoln Stein; Richard Durbin; Michael Ashburner
Journal: Genome Biol Date: 2005-04-29 Impact factor: 13.583

4. The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata.

Authors: Konstantinos Liolios; Konstantinos Mavromatis; Nektarios Tavernarakis; Nikos C Kyrpides
Journal: Nucleic Acids Res Date: 2007-11-02 Impact factor: 16.971

4 in total

211 in total

1. Sequencing parasite populations.

Authors: Alejandro Sanchez-Flores
Journal: Nat Rev Microbiol Date: 2012-01-16 Impact factor: 60.633

Review 2. A beginner's guide to eukaryotic genome annotation.

Authors: Mark Yandell; Daniel Ence
Journal: Nat Rev Genet Date: 2012-04-18 Impact factor: 53.242

3. A global network of coexisting microbes from environmental and whole-genome sequence data.

Authors: Samuel Chaffron; Hubert Rehrauer; Jakob Pernthaler; Christian von Mering
Journal: Genome Res Date: 2010-05-10 Impact factor: 9.043

4. Observing the invisible through imaging mass spectrometry, a window into the metabolic exchange patterns of microbes.

Authors: David J Gonzalez; Yuquan Xu; Yu-Liang Yang; Eduardo Esquenazi; Wei-Ting Liu; Anna Edlund; Tram Duong; Liangcheng Du; István Molnár; William H Gerwick; Paul R Jensen; Michael Fischbach; Chih-Chuang Liaw; Paul Straight; Victor Nizet; Pieter C Dorrestein
Journal: J Proteomics Date: 2012-05-26 Impact factor: 4.044

5. Genome sequence of the zoonotic pathogen Chlamydophila psittaci.

Authors: Helena M B Seth-Smith; Simon R Harris; Richard Rance; Anthony P West; Juliette A Severin; Jacobus M Ossewaarde; Lesley T Cutcliffe; Rachel J Skilton; Pete Marsh; Julian Parkhill; Ian N Clarke; Nicholas R Thomson
Journal: J Bacteriol Date: 2010-12-23 Impact factor: 3.490

6. Novel structural elements within the nonproteolytic clostridium botulinum type F toxin gene cluster.

Authors: N Dover; J R Barash; K K Hill; J C Detter; S S Arnon
Journal: Appl Environ Microbiol Date: 2010-12-23 Impact factor: 4.792

7. From green to red: horizontal gene transfer of the phycoerythrin gene cluster between Planktothrix strains.

Authors: Ave Tooming-Klunderud; Hanne Sogge; Trine Ballestad Rounge; Alexander J Nederbragt; Karin Lagesen; Gernot Glöckner; Paul K Hayes; Thomas Rohrlack; Kjetill S Jakobsen
Journal: Appl Environ Microbiol Date: 2013-08-30 Impact factor: 4.792

8. Genome sequence of a recently emerged, highly transmissible, multi-antibiotic- and antiseptic-resistant variant of methicillin-resistant Staphylococcus aureus, sequence type 239 (TW).

Authors: Matthew T G Holden; Jodi A Lindsay; Craig Corton; Michael A Quail; Joshua D Cockfield; Smriti Pathak; Rahul Batra; Julian Parkhill; Stephen D Bentley; Jonathan D Edgeworth
Journal: J Bacteriol Date: 2009-11-30 Impact factor: 3.490

9. Accurate read-based metagenome characterization using a hierarchical suite of unique signatures.

Authors: Tracey Allen K Freitas; Po-E Li; Matthew B Scholz; Patrick S G Chain
Journal: Nucleic Acids Res Date: 2015-03-12 Impact factor: 16.971

10. The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution.

Authors: Ignazio Verde; Albert G Abbott; Simone Scalabrin; Sook Jung; Shengqiang Shu; Fabio Marroni; Tatyana Zhebentyayeva; Maria Teresa Dettori; Jane Grimwood; Federica Cattonaro; Andrea Zuccolo; Laura Rossini; Jerry Jenkins; Elisa Vendramin; Lee A Meisel; Veronique Decroocq; Bryon Sosinski; Simon Prochnik; Therese Mitros; Alberto Policriti; Guido Cipriani; Luca Dondini; Stephen Ficklin; David M Goodstein; Pengfei Xuan; Cristian Del Fabbro; Valeria Aramini; Dario Copetti; Susana Gonzalez; David S Horner; Rachele Falchi; Susan Lucas; Erica Mica; Jonathan Maldonado; Barbara Lazzari; Douglas Bielenberg; Raul Pirona; Mara Miculan; Abdelali Barakat; Raffaele Testolin; Alessandra Stella; Stefano Tartarini; Pietro Tonutti; Pere Arús; Ariel Orellana; Christina Wells; Dorrie Main; Giannina Vizzotto; Herman Silva; Francesco Salamini; Jeremy Schmutz; Michele Morgante; Daniel S Rokhsar
Journal: Nat Genet Date: 2013-03-24 Impact factor: 38.330