| Literature DB >> 21677794 |
Kwang Joong Kim1, Cinoo Kim, Jeong Bok, Kyung-Seon Kim, Eun-Ju Lee, Sung Pyo Park, Hum Chung, Bok-Ghee Han, Hyung-Lae Kim, Kuchan Kimm, Hyeong Gon Yu, Jong-Young Lee.
Abstract
PURPOSE: To determine the spectrum and frequency of rhodopsin gene (RHO) mutations in Korean patients with retinitis pigmentosa (RP) and to characterize genotype-phenotype correlations in patients with mutations.Entities:
Mesh:
Substances:
Year: 2011 PMID: 21677794 PMCID: PMC3113629
Source DB: PubMed Journal: Mol Vis ISSN: 1090-0535 Impact factor: 2.367
Primers.
| Exon 1 | Forward | TCAGAACCCAGAGTCATCCA | 575 bp | 58 |
| | Reverse | GGACAGGAGAAGGGAGAAGG | | |
| Exon 2 | Forward | AAGCTCTCTCCTTCCCCAAG | 496 bp | 58 |
| | Reverse | CCAGCCCTTGTAGCAACATT | | |
| Exon 3–4 | Forward | CATCCCCATCTGATCCATTC | 815 bp | 58 |
| | Reverse | ACTGCTGACCCAAGACTGCT | | |
| Exon 5 | Forward | AGCTGGATTTGAGTGGATGG | 788 bp | 58 |
| Reverse | CCTACTGTGTGCCCCATTCT |
Mutation screening of the RHO gene.
| Exon 1 | c.50C>T | p.Thr17Met | 1/604 | 0/228 | Reported | [ |
| Exon 3 | c.533A>G | p.Tyr178Cys | 1/604 | 0/228 | Reported | [ |
| Exon 4 | c.888G>T | p.Lys296Asn | 1/604 | 0/228 | Reported | [ |
| Exon 4 | c.893C>A | p.Ala298Asp | 1/604 | 0/228 | Novel | |
| Exon 5 | c.1040C>T | p.Pro347Leu | 2/604 | 0/228 | Reported | [ |
| Intron 3 | c.696+4C>T | | 28/604 | 11/228 | Reported | |
| Exon 4 | c.891C>T | p.Ser297Ser | 5/604 | 2/228 | Reported | [ |
| Intron 4 | c.937–23G>A | 172/604 | 58/228 | Reported | ||
Allele frequencies were measured in a total of 302 patients (604 chromosomes) and 114 controls (228 chromosomes).
Figure 1Pedigrees of families in which a rhodopsin mutation was identified. The mutation p.Y178C (B) and the mutation p.P347L (E) were segregated with disease phenotype. The newly identified mutation p.A298D (D) was found in a sporadic patient (II-3). Black and white symbols indicate affected and unaffected individuals, respectively. The mutation is represented by “m”; wild-type alleles are represented by “+”; arrows indicate probands.
Figure 2Conservation of rhodopsin protein. The positions of previously reported mutations (p.T17M, p.Y178C, p.K296N, and p.P347L) were highly conserved across species. However, the position of newly identified p.A298D mutation was conserved in mammals. Accession numbers of the protein sequences used for sequence comparison were as follows: chimpanzee, XP_516740.2; monkey, XP_001094250.1; pig, NP_999386.1; rat, NP_254276.1; chicken, NP_990821.1; frog, NP_001080517.1; zebrafish, NP_571159.1. The arrowhead shows the position of missense mutations identified in the present study.
Prediction of the functional impact of missense mutations.
| p.T17M | adRP | ||||||
| p.Y178C | adRP | ||||||
| p.K296N | adRP | na | |||||
| p.A298D | #Sim | Benign | −2.58 | ||||
| p.P347L | adRP, Sim | Benign | na | −1.92 |
*Prob, probably damaging; †Poss, possibly damaging; ‡A, affect protein function; §P, pathological; #sim, simplex (sporadic) RP. na, not applicable. Bold means prediction of deleterious effect on protein structure or function.
The RHO mutations and phenotypes.
| II-2, | 47/M | p.Y178C | 16 | FC/NLP | IOL | Failure | Failure | 202/188 |
| III-2, | 23/F | p.Y178C | 13 | 0.8/0.6 | Clear | na | na | 207/213 |
| II-3, | 55/M | p.A298D | 16 | HM/LP | PSC | Failure | Non-detectable | 231/267 |
| II-1, | 17/F | p.P347L | 15 | 1.0/0.7 | Clear | Peripheral constriction | Reduction/Non-detectable | 387/560 |
| II-3, | 13/M | p.P347L | 12 | 1.2/1.0 | Clear | Normal | Normal range/Non-detectable | 295/291 |
| II-3, | 26/F | p.P347L | 23 | 0.6/0.7 | PSC | Central/10° | Non-detectable | 216/175 |
BCVA, best corrected visual acuity; CFT, central foveal thickness; ERG, electroretinogram; FC, finger count at specified distance; HM, hand motion; IOL, intraocular lens; LE, left eye; LP, light perception; NLP, no light perception; NS, nuclear sclerosis; OCT, optical coherence tomography; PSC, posterior subcapsular opacity; RE, right eye; VF, visual field. *Onset (y), age at onset of night blindness. †na, data not available.
Figure 3Comparison of fundus photographs and spectral domain optical coherence tomography (SD-OCT) between patients with the p.A298D and the p.P347L mutations. Fundus photographs (A, B, E, F) show typical retinitis pigmentosa (RP) features: retinal degeneration with pigmentation, atrophy of retinal pigment epithelium (RPE), and attenuated vessels, which involved the area inside the vascular arcade. Compared with a 55-year-old patient with the p.A298D mutation (A, B), a 44-year-old patient with the p.P347L mutation (E, F) had more severe retinal pigmentation, despite being 11 years younger. SD-OCT (C, D, G, H) revealed the degeneration of photoreceptor and RPE layers and the disruption of the inner and outer segment junction of the photoreceptor in both patients. In particular, severe foveal atrophy in the patient with the p.P347L mutation resulted in a large decrease of the central foveal thickness: 161 μm in the right eye (G; arrow) and 152 μm in the left eye (H; arrow).