Literature DB >> 21677196

Deep sequencing of patient genomes for disease diagnosis: when will it become routine?

Stephen F Kingsmore1, Carol J Saunders.   

Abstract

Next-generation sequencing technologies have greatly lowered the cost of whole-genome sequencing (WGS) and related approaches. Thus, comprehensive sequencing for diagnostic purposes may clear this financial hurdle in the near future. The report by Bainbridge and colleagues in this issue of Science Translational Medicine illustrates the diagnostic power of WGS. In this Perspective, we discuss whether and how genome sequencing might become routine for clinical diagnosis.

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Year:  2011        PMID: 21677196      PMCID: PMC4264992          DOI: 10.1126/scitranslmed.3002695

Source DB:  PubMed          Journal:  Sci Transl Med        ISSN: 1946-6234            Impact factor:   17.956


  26 in total

1.  Intellectual property. Enhanced: intellectual property landscape of the human genome.

Authors:  Kyle Jensen; Fiona Murray
Journal:  Science       Date:  2005-10-14       Impact factor: 47.728

2.  Technical standards and guidelines: molecular genetic testing for ultra-rare disorders.

Authors:  Anne Maddalena; Sherri Bale; Soma Das; Wayne Grody; Sue Richards
Journal:  Genet Med       Date:  2005-10       Impact factor: 8.822

3.  Frequency of genetic diseases and health coverage of children requiring admission in a general pediatric clinic of northern Greece.

Authors:  Theodoros Lialiaris; Elpis Mantadakis; Dimitra Kareli; Panagiotis Mpountoukas; Aggelos Tsalkidis; Athanassios Chatzimichail
Journal:  Ital J Pediatr       Date:  2010-01-26       Impact factor: 2.638

4.  Mutations in NOTCH2 cause Hajdu-Cheney syndrome, a disorder of severe and progressive bone loss.

Authors:  Michael A Simpson; Melita D Irving; Esra Asilmaz; Mary J Gray; Dimitra Dafou; Frances V Elmslie; Sahar Mansour; Sue E Holder; Caroline E Brain; Barbara K Burton; Katherine H Kim; Richard M Pauli; Salim Aftimos; Helen Stewart; Chong Ae Kim; Muriel Holder-Espinasse; Stephen P Robertson; William M Drake; Richard C Trembath
Journal:  Nat Genet       Date:  2011-03-06       Impact factor: 38.330

5.  The burden of genetic disease on inpatient care in a children's hospital.

Authors:  Shawn E McCandless; Jeanne W Brunger; Suzanne B Cassidy
Journal:  Am J Hum Genet       Date:  2003-12-12       Impact factor: 11.025

6.  Genetic diagnosis by whole exome capture and massively parallel DNA sequencing.

Authors:  Murim Choi; Ute I Scholl; Weizhen Ji; Tiewen Liu; Irina R Tikhonova; Paul Zumbo; Ahmet Nayir; Ayşin Bakkaloğlu; Seza Ozen; Sami Sanjad; Carol Nelson-Williams; Anita Farhi; Shrikant Mane; Richard P Lifton
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-27       Impact factor: 11.205

7.  A highly annotated whole-genome sequence of a Korean individual.

Authors:  Jong-Il Kim; Young Seok Ju; Hansoo Park; Sheehyun Kim; Seonwook Lee; Jae-Hyuk Yi; Joann Mudge; Neil A Miller; Dongwan Hong; Callum J Bell; Hye-Sun Kim; In-Soon Chung; Woo-Chung Lee; Ji-Sun Lee; Seung-Hyun Seo; Ji-Young Yun; Hyun Nyun Woo; Heewook Lee; Dongwhan Suh; Seungbok Lee; Hyun-Jin Kim; Maryam Yavartanoo; Minhye Kwak; Ying Zheng; Mi Kyeong Lee; Hyunjun Park; Jeong Yeon Kim; Omer Gokcumen; Ryan E Mills; Alexander Wait Zaranek; Joseph Thakuria; Xiaodi Wu; Ryan W Kim; Jim J Huntley; Shujun Luo; Gary P Schroth; Thomas D Wu; HyeRan Kim; Kap-Seok Yang; Woong-Yang Park; Hyungtae Kim; George M Church; Charles Lee; Stephen F Kingsmore; Jeong-Sun Seo
Journal:  Nature       Date:  2009-07-08       Impact factor: 49.962

8.  Points to consider: ethical, legal, and psychosocial implications of genetic testing in children and adolescents. American Society of Human Genetics Board of Directors, American College of Medical Genetics Board of Directors.

Authors: 
Journal:  Am J Hum Genet       Date:  1995-11       Impact factor: 11.025

9.  ACMG recommendations for standards for interpretation and reporting of sequence variations: Revisions 2007.

Authors:  C Sue Richards; Sherri Bale; Daniel B Bellissimo; Soma Das; Wayne W Grody; Madhuri R Hegde; Elaine Lyon; Brian E Ward
Journal:  Genet Med       Date:  2008-04       Impact factor: 8.822

10.  Targeted capture and massively parallel sequencing of 12 human exomes.

Authors:  Sarah B Ng; Emily H Turner; Peggy D Robertson; Steven D Flygare; Abigail W Bigham; Choli Lee; Tristan Shaffer; Michelle Wong; Arindam Bhattacharjee; Evan E Eichler; Michael Bamshad; Deborah A Nickerson; Jay Shendure
Journal:  Nature       Date:  2009-08-16       Impact factor: 49.962

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  45 in total

1.  Ethical considerations associated with clinical use of next-generation sequencing in children.

Authors:  John D Lantos; Michael Artman; Stephen F Kingsmore
Journal:  J Pediatr       Date:  2011-12       Impact factor: 4.406

2.  QuRe: software for viral quasispecies reconstruction from next-generation sequencing data.

Authors:  Mattia C F Prosperi; Marco Salemi
Journal:  Bioinformatics       Date:  2011-11-15       Impact factor: 6.937

3.  On the future of genetic risk assessment.

Authors:  Hans-Hilger Ropers
Journal:  J Community Genet       Date:  2012-04-01

Review 4.  Whole-Exome Sequencing and Whole-Genome Sequencing in Critically Ill Neonates Suspected to Have Single-Gene Disorders.

Authors:  Laurie D Smith; Laurel K Willig; Stephen F Kingsmore
Journal:  Cold Spring Harb Perspect Med       Date:  2015-12-18       Impact factor: 6.915

Review 5.  Rare-disease genetics in the era of next-generation sequencing: discovery to translation.

Authors:  Kym M Boycott; Megan R Vanstone; Dennis E Bulman; Alex E MacKenzie
Journal:  Nat Rev Genet       Date:  2013-09-03       Impact factor: 53.242

Review 6.  The promise of whole-exome sequencing in medical genetics.

Authors:  Bahareh Rabbani; Mustafa Tekin; Nejat Mahdieh
Journal:  J Hum Genet       Date:  2013-11-07       Impact factor: 3.172

7.  Whole-genome sequencing for identification of Mendelian disorders in critically ill infants: a retrospective analysis of diagnostic and clinical findings.

Authors:  Laurel K Willig; Josh E Petrikin; Laurie D Smith; Carol J Saunders; Isabelle Thiffault; Neil A Miller; Sarah E Soden; Julie A Cakici; Suzanne M Herd; Greyson Twist; Aaron Noll; Mitchell Creed; Patria M Alba; Shannon L Carpenter; Mark A Clements; Ryan T Fischer; J Allyson Hays; Howard Kilbride; Ryan J McDonough; Jamie L Rosterman; Sarah L Tsai; Lee Zellmer; Emily G Farrow; Stephen F Kingsmore
Journal:  Lancet Respir Med       Date:  2015-04-27       Impact factor: 30.700

8.  Whole-genome sequencing overcomes pseudogene homology to diagnose autosomal dominant polycystic kidney disease.

Authors:  Amali C Mallawaarachchi; Yvonne Hort; Mark J Cowley; Mark J McCabe; André Minoche; Marcel E Dinger; John Shine; Timothy J Furlong
Journal:  Eur J Hum Genet       Date:  2016-05-11       Impact factor: 4.246

9.  Understanding the enemy.

Authors:  Victor E Velculescu; Luis A Diaz
Journal:  Sci Transl Med       Date:  2011-08-31       Impact factor: 17.956

10.  Rapid whole-genome sequencing for genetic disease diagnosis in neonatal intensive care units.

Authors:  Carol Jean Saunders; Neil Andrew Miller; Sarah Elizabeth Soden; Darrell Lee Dinwiddie; Aaron Noll; Noor Abu Alnadi; Nevene Andraws; Melanie LeAnn Patterson; Lisa Ann Krivohlavek; Joel Fellis; Sean Humphray; Peter Saffrey; Zoya Kingsbury; Jacqueline Claire Weir; Jason Betley; Russell James Grocock; Elliott Harrison Margulies; Emily Gwendolyn Farrow; Michael Artman; Nicole Pauline Safina; Joshua Erin Petrikin; Kevin Peter Hall; Stephen Francis Kingsmore
Journal:  Sci Transl Med       Date:  2012-10-03       Impact factor: 17.956

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