Literature DB >> 21666919

Nucleic acid X-ray crystallography via direct selenium derivatization.

Lina Lin1, Jia Sheng, Zhen Huang.   

Abstract

X-ray crystallography has proven to be an essential tool for structural studies of bio-macromolecules at the atomic level. There are two major bottle-neck problems in the macromolecular crystal structure determination: phasing and crystallization. Although the selenium derivatization is routinely used for solving novel protein structures through the MAD phasing technique, the phase problem is still a critical issue in nucleic acid crystallography. The background and current progress of using direct selenium-derivatization of nucleic acids (SeNA) to solve the phase problem and to facilitate nucleic acid crystallization for X-ray crystallography are summarized in this tutorial review. This journal is © The Royal Society of Chemistry 2011

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Year:  2011        PMID: 21666919     DOI: 10.1039/c1cs15020k

Source DB:  PubMed          Journal:  Chem Soc Rev        ISSN: 0306-0012            Impact factor:   54.564


  17 in total

1.  Incorporation of isotopic, fluorescent, and heavy-atom-modified nucleotides into RNAs by position-selective labeling of RNA.

Authors:  Yu Liu; Erik Holmstrom; Ping Yu; Kemin Tan; Xiaobing Zuo; David J Nesbitt; Rui Sousa; Jason R Stagno; Yun-Xing Wang
Journal:  Nat Protoc       Date:  2018-04-12       Impact factor: 13.491

2.  Synthesis of novel di-Se-containing thymidine and Se-DNAs for structure and function studies.

Authors:  Zhang Wen; Hassan E Abdalla; Huang Zhen
Journal:  Sci China Chem       Date:  2013-03       Impact factor: 9.445

3.  Evolution of functional six-nucleotide DNA.

Authors:  Liqin Zhang; Zunyi Yang; Kwame Sefah; Kevin M Bradley; Shuichi Hoshika; Myong-Jung Kim; Hyo-Joong Kim; Guizhi Zhu; Elizabeth Jiménez; Sena Cansiz; I-Ting Teng; Carole Champanhac; Christopher McLendon; Chen Liu; Wen Zhang; Dietlind L Gerloff; Zhen Huang; Weihong Tan; Steven A Benner
Journal:  J Am Chem Soc       Date:  2015-05-20       Impact factor: 15.419

4.  Synthesis of 6-Se-guanosine RNAs for structural study.

Authors:  Jozef Salon; Jianhua Gan; Rob Abdur; Hehua Liu; Zhen Huang
Journal:  Org Lett       Date:  2013-07-16       Impact factor: 6.005

5.  Nucleic Acid Crystallography via Direct Selenium Derivatization: RNAs Modified with Se-Nucleobases.

Authors:  Huiyan Sun; Sibo Jiang; Zhen Huang
Journal:  Methods Mol Biol       Date:  2016

6.  Synthesis and optical behaviors of 6-seleno-deoxyguanosine.

Authors:  Kaur Manindar; Huang Zhen
Journal:  Sci China Chem       Date:  2014-02-01       Impact factor: 9.445

Review 7.  Structure-based DNA-targeting strategies with small molecule ligands for drug discovery.

Authors:  Jia Sheng; Jianhua Gan; Zhen Huang
Journal:  Med Res Rev       Date:  2013-04-30       Impact factor: 12.944

8.  Novel complex MAD phasing and RNase H structural insights using selenium oligonucleotides.

Authors:  Rob Abdur; Oksana O Gerlits; Jianhua Gan; Jiansheng Jiang; Jozef Salon; Andrey Y Kovalevsky; Alexander A Chumanevich; Irene T Weber; Zhen Huang
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-01-29

9.  Temperature-Induced Replacement of Phosphate Proton with Metal Ion Captured in Neutron Structures of A-DNA.

Authors:  Venu Gopal Vandavasi; Matthew P Blakeley; David A Keen; Lillian R Hu; Zhen Huang; Andrey Kovalevsky
Journal:  Structure       Date:  2018-09-20       Impact factor: 5.006

10.  Use of a novel 5'-regioselective phosphitylating reagent for one-pot synthesis of nucleoside 5'-triphosphates from unprotected nucleosides.

Authors:  Julianne Caton-Williams; Rudiona Hoxhaj; Bilal Fiaz; Zhen Huang
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2013-03
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