Literature DB >> 21665971

Importance of a hydrophobic pocket for peptide binding in lactococcal OppA.

Ronnie P-A Berntsson1, Andy-Mark W H Thunnissen, Bert Poolman, Dirk-Jan Slotboom.   

Abstract

Lactococcal oligopeptide-binding protein A (OppA) binds peptides with widely varied lengths and sequences. We previously hypothesized that a hydrophobic pocket in OppA preferentially binds a hydrophobic peptide side chain and thus determines its binding register. Two crystal structures of OppA with different nonapeptides now indeed show binding in different registers.

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Year:  2011        PMID： 21665971      PMCID： PMC3147668          DOI： 10.1128/JB.00447-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  15 in total

1.  Combinatorial peptide libraries reveal the ligand-binding mechanism of the oligopeptide receptor OppA of Lactococcus lactis.

Authors:  F J Detmers; F C Lanfermeijer; R Abele; R W Jack; R Tampe; W N Konings; B Poolman
Journal:  Proc Natl Acad Sci U S A       Date:  2000-11-07       Impact factor: 11.205

2.  PHENIX: building new software for automated crystallographic structure determination.

Authors:  Paul D Adams; Ralf W Grosse-Kunstleve; Li Wei Hung; Thomas R Ioerger; Airlie J McCoy; Nigel W Moriarty; Randy J Read; James C Sacchettini; Nicholas K Sauter; Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-10-21

3.  The binding specificity of OppA determines the selectivity of the oligopeptide ATP-binding cassette transporter.

Authors:  Mark K Doeven; Rupert Abele; Robert Tampé; Bert Poolman
Journal:  J Biol Chem       Date:  2004-05-29       Impact factor: 5.157

4.  Refinement of macromolecular structures by the maximum-likelihood method.

Authors:  G N Murshudov; A A Vagin; E J Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-05-01

5.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

6.  Likelihood-enhanced fast translation functions.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Laurent C Storoni; Randy J Read
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-03-24

7.  Reconstruction of the proteolytic pathway for use of beta-casein by Lactococcus lactis.

Authors:  E R Kunji; G Fang; C M Jeronimus-Stratingh; A P Bruins; B Poolman; W N Konings
Journal:  Mol Microbiol       Date:  1998-03       Impact factor: 3.501

8.  Specificity of milk peptide utilization by Lactococcus lactis.

Authors:  V Juillard; A Guillot; D Le Bars; J C Gripon
Journal:  Appl Environ Microbiol       Date:  1998-04       Impact factor: 4.792

9.  Transport of beta-casein-derived peptides by the oligopeptide transport system is a crucial step in the proteolytic pathway of Lactococcus lactis.

Authors:  E R Kunji; A Hagting; C J De Vries; V Juillard; A J Haandrikman; B Poolman; W N Konings
Journal:  J Biol Chem       Date:  1995-01-27       Impact factor: 5.157

10.  The structural basis for peptide selection by the transport receptor OppA.

Authors:  Ronnie P-A Berntsson; Mark K Doeven; Fabrizia Fusetti; Ria H Duurkens; Durba Sengupta; Siewert-Jan Marrink; Andy-Mark W H Thunnissen; Bert Poolman; Dirk-Jan Slotboom
Journal:  EMBO J       Date:  2009-03-19       Impact factor: 11.598
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  11 in total

1.  Structure and mode of peptide binding of pheromone receptor PrgZ.

Authors:  Ronnie P-A Berntsson; Gea K Schuurman-Wolters; Gary Dunny; Dirk-Jan Slotboom; Bert Poolman
Journal:  J Biol Chem       Date:  2012-09-04       Impact factor: 5.157

2.  Crystal structure of a putative oligopeptide-binding periplasmic protein from a hyperthermophile.

Authors:  Hye-Jin Yoon; Hee Jung Kim; Bunzo Mikami; Yeon Gyu Yu; Hyung Ho Lee
Journal:  Extremophiles       Date:  2016-07-05       Impact factor: 2.395

3.  Molecular Basis of Unexpected Specificity of ABC Transporter-Associated Substrate-Binding Protein DppA from Helicobacter pylori.

Authors:  Mohammad M Rahman; Mayra A Machuca; Mohammad F Khan; Christopher K Barlow; Ralf B Schittenhelm; Anna Roujeinikova
Journal:  J Bacteriol       Date:  2019-09-20       Impact factor: 3.490

4.  Structural insights into the multispecific recognition of dipeptides of deep-sea gram-negative bacterium Pseudoalteromonas sp. strain SM9913.

Authors:  Chun-Yang Li; Xiu-Lan Chen; Qi-Long Qin; Peng Wang; Wei-Xin Zhang; Bin-Bin Xie; Hai-Nan Su; Xi-Ying Zhang; Bai-Cheng Zhou; Yu-Zhong Zhang
Journal:  J Bacteriol       Date:  2015-01-20       Impact factor: 3.490

5.  Mechanistic insights into staphylopine-mediated metal acquisition.

Authors:  Liqiang Song; Yifei Zhang; Weizhong Chen; Tongnian Gu; Shu-Yu Zhang; Quanjiang Ji
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-26       Impact factor: 11.205

Review 6.  Molecular insights into proton coupled peptide transport in the PTR family of oligopeptide transporters.

Authors:  Simon Newstead
Journal:  Biochim Biophys Acta       Date:  2014-05-21

7.  Insight into the bovine milk peptide LPcin-YK3 selection in the proteolytic system of Lactobacillus species.

Authors:  Woo Yong Sung; Ji Won Yu; Jong Tae Hwang; Hee Jin Nam; Ji Ye Park; Yongae Kim; Jang-Hee Cho
Journal:  J Pept Sci       Date:  2020-06-22       Impact factor: 1.905

8.  Conformational and dynamic plasticity in substrate-binding proteins underlies selective transport in ABC importers.

Authors:  Marijn de Boer; Giorgos Gouridis; Ruslan Vietrov; Stephanie L Begg; Gea K Schuurman-Wolters; Florence Husada; Nikolaos Eleftheriadis; Bert Poolman; Christopher A McDevitt; Thorben Cordes
Journal:  Elife       Date:  2019-03-22       Impact factor: 8.140

9.  pH- and Temperature-Dependent Peptide Binding to the Lactococcus lactis Oligopeptide-Binding Protein A Measured with a Fluorescence Anisotropy Assay.

Authors:  Stevie Norcross; Ashwin Sunderraj; Mathew Tantama
Journal:  ACS Omega       Date:  2019-02-06

10.  Molecular details of ligand selectivity determinants in a promiscuous β-glucan periplasmic binding protein.

Authors:  Parthapratim Munshi; Christopher B Stanley; Sudipa Ghimire-Rijal; Xun Lu; Dean A Myles; Matthew J Cuneo
Journal:  BMC Struct Biol       Date:  2013-10-04
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