Literature DB >> 21642980

A systematic RNAi synthetic interaction screen reveals a link between p53 and snoRNP assembly.

Dragomir B Krastev1, Mikolaj Slabicki, Maciej Paszkowski-Rogacz, Nina C Hubner, Magno Junqueira, Andrej Shevchenko, Matthias Mann, Karla M Neugebauer, Frank Buchholz.   

Abstract

TP53 (tumour protein 53) is one of the most frequently mutated genes in human cancer and its role during cellular transformation has been studied extensively. However, the homeostatic functions of p53 are less well understood. Here, we explore the molecular dependency network of TP53 through an RNAi-mediated synthetic interaction screen employing two HCT116 isogenic cell lines and a genome-scale endoribonuclease-prepared short interfering RNA library. We identify a variety of TP53 synthetic interactions unmasking the complex connections of p53 to cellular physiology and growth control. Molecular dissection of the TP53 synthetic interaction with UNRIP indicates an enhanced dependency of TP53-negative cells on small nucleolar ribonucleoprotein (snoRNP) assembly. This dependency is mediated by the snoRNP chaperone gene NOLC1 (also known as NOPP140), which we identify as a physiological p53 target gene. This unanticipated function of TP53 in snoRNP assembly highlights the potential of RNAi-mediated synthetic interaction screens to dissect molecular pathways of tumour suppressor genes.

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Year:  2011        PMID: 21642980     DOI: 10.1038/ncb2264

Source DB:  PubMed          Journal:  Nat Cell Biol        ISSN: 1465-7392            Impact factor:   28.824


  68 in total

1.  Combined immunofluorescence, RNA fluorescent in situ hybridization, and DNA fluorescent in situ hybridization to study chromatin changes, transcriptional activity, nuclear organization, and X-chromosome inactivation.

Authors:  Julie Chaumeil; Sandrine Augui; Jennifer C Chow; Edith Heard
Journal:  Methods Mol Biol       Date:  2008

2.  Separating the wheat from the chaff: unbiased filtering of background tandem mass spectra improves protein identification.

Authors:  Magno Junqueira; Victor Spirin; Tiago Santana Balbuena; Patrice Waridel; Vineeth Surendranath; Grigoriy Kryukov; Ivan Adzhubei; Henrik Thomas; Shamil Sunyaev; Andrej Shevchenko
Journal:  J Proteome Res       Date:  2008-06-18       Impact factor: 4.466

3.  The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase.

Authors:  D L Lafontaine; C Bousquet-Antonelli; Y Henry; M Caizergues-Ferrer; D Tollervey
Journal:  Genes Dev       Date:  1998-02-15       Impact factor: 11.361

4.  RNAi knockdown of Nopp140 induces Minute-like phenotypes in Drosophila.

Authors:  Zhengfang Cui; Patrick J DiMario
Journal:  Mol Biol Cell       Date:  2007-03-28       Impact factor: 4.138

5.  Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: analysis by the application of a new sequencing technique.

Authors:  A Bakin; J Ofengand
Journal:  Biochemistry       Date:  1993-09-21       Impact factor: 3.162

6.  Stepwise RNP assembly at the site of H/ACA RNA transcription in human cells.

Authors:  Xavier Darzacq; Nupur Kittur; Sujayita Roy; Yaron Shav-Tal; Robert H Singer; U Thomas Meier
Journal:  J Cell Biol       Date:  2006-04-17       Impact factor: 10.539

7.  Reactome knowledgebase of human biological pathways and processes.

Authors:  Lisa Matthews; Gopal Gopinath; Marc Gillespie; Michael Caudy; David Croft; Bernard de Bono; Phani Garapati; Jill Hemish; Henning Hermjakob; Bijay Jassal; Alex Kanapin; Suzanna Lewis; Shahana Mahajan; Bruce May; Esther Schmidt; Imre Vastrik; Guanming Wu; Ewan Birney; Lincoln Stein; Peter D'Eustachio
Journal:  Nucleic Acids Res       Date:  2008-11-03       Impact factor: 16.971

8.  Comparative profiling identifies C13orf3 as a component of the Ska complex required for mammalian cell division.

Authors:  Mirko Theis; Mikolaj Slabicki; Magno Junqueira; Maciej Paszkowski-Rogacz; Jana Sontheimer; Ralf Kittler; Anne-Kristine Heninger; Timo Glatter; Kristi Kruusmaa; Ina Poser; Anthony A Hyman; M Teresa Pisabarro; Matthias Gstaiger; Rudolf Aebersold; Andrej Shevchenko; Frank Buchholz
Journal:  EMBO J       Date:  2009-04-23       Impact factor: 11.598

9.  Nopp140 functions as a molecular link between the nucleolus and the coiled bodies.

Authors:  C Isaac; Y Yang; U T Meier
Journal:  J Cell Biol       Date:  1998-07-27       Impact factor: 10.539

10.  Microinjection of anti-coilin antibodies affects the structure of coiled bodies.

Authors:  F Almeida; R Saffrich; W Ansorge; M Carmo-Fonseca
Journal:  J Cell Biol       Date:  1998-08-24       Impact factor: 10.539

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  33 in total

1.  Combined RNAi and localization for functionally dissecting long noncoding RNAs.

Authors:  Debojyoti Chakraborty; Dennis Kappei; Mirko Theis; Anja Nitzsche; Li Ding; Maciej Paszkowski-Rogacz; Vineeth Surendranath; Nicolas Berger; Herbert Schulz; Kathrin Saar; Norbert Hubner; Frank Buchholz
Journal:  Nat Methods       Date:  2012-02-12       Impact factor: 28.547

2.  Collateral Lethality: A new therapeutic strategy in oncology.

Authors:  Florian L Muller; Elisa A Aquilanti; Ronald A DePinho
Journal:  Trends Cancer       Date:  2015-11-01

Review 3.  p53, a translational regulator: contribution to its tumour-suppressor activity.

Authors:  V Marcel; F Catez; J-J Diaz
Journal:  Oncogene       Date:  2015-03-02       Impact factor: 9.867

4.  Non-coding RNA: A new molecular pathway for TP53.

Authors:  Mhairi Skinner
Journal:  Nat Rev Mol Cell Biol       Date:  2011-06-08       Impact factor: 94.444

Review 5.  Noncoding RNAs in eukaryotic ribosome biogenesis and function.

Authors:  Denis L J Lafontaine
Journal:  Nat Struct Mol Biol       Date:  2015-01       Impact factor: 15.369

6.  Scission of the p53-MDM2 Loop by Ribosomal Proteins.

Authors:  Xiang Zhou; Jun-Ming Liao; Wen-Juan Liao; Hua Lu
Journal:  Genes Cancer       Date:  2012-03

7.  Abnormal mitosis triggers p53-dependent cell cycle arrest in human tetraploid cells.

Authors:  Christian Kuffer; Anastasia Yurievna Kuznetsova; Zuzana Storchová
Journal:  Chromosoma       Date:  2013-04-28       Impact factor: 4.316

Review 8.  High-resolution network biology: connecting sequence with function.

Authors:  Colm J Ryan; Peter Cimermančič; Zachary A Szpiech; Andrej Sali; Ryan D Hernandez; Nevan J Krogan
Journal:  Nat Rev Genet       Date:  2013-11-07       Impact factor: 53.242

9.  Plk2 regulates mitotic spindle orientation and mammary gland development.

Authors:  Elizabeth Villegas; Elena B Kabotyanski; Amy N Shore; Chad J Creighton; Thomas F Westbrook; Jeffrey M Rosen
Journal:  Development       Date:  2014-03-05       Impact factor: 6.868

Review 10.  Synthetic Lethal Networks for Precision Oncology: Promises and Pitfalls.

Authors:  John Paul Shen; Trey Ideker
Journal:  J Mol Biol       Date:  2018-06-20       Impact factor: 5.469

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