Literature DB >> 21641916

Structural sensitivity of biological models revisited.

Flora Cordoleani1, Cordoleani Flora, David Nerini, Nerini David, Mathias Gauduchon, Gauduchon Mathias, Andrew Morozov, Morozov Andrew, Jean-Christophe Poggiale, Poggiale Jean-Christophe.   

Abstract

Enhancing the predictive power of models in biology is a challenging issue. Among the major difficulties impeding model development and implementation are the sensitivity of outcomes to variations in model parameters, the problem of choosing of particular expressions for the parametrization of functional relations, and difficulties in validating models using laboratory data and/or field observations. In this paper, we revisit the phenomenon which is referred to as structural sensitivity of a model. Structural sensitivity arises as a result of the interplay between sensitivity of model outcomes to variations in parameters and sensitivity to the choice of model functions, and this can be somewhat of a bottleneck in improving the models predictive power. We provide a rigorous definition of structural sensitivity and we show how we can quantify the degree of sensitivity of a model based on the Hausdorff distance concept. We propose a simple semi-analytical test of structural sensitivity in an ODE modeling framework. Furthermore, we emphasize the importance of directly linking the variability of field/experimental data and model predictions, and we demonstrate a way of assessing the robustness of modeling predictions with respect to data sampling variability. As an insightful illustrative example, we test our sensitivity analysis methods on a chemostat predator-prey model, where we use laboratory data on the feeding of protozoa to parameterize the predator functional response.
Copyright © 2011 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2011        PMID: 21641916     DOI: 10.1016/j.jtbi.2011.05.021

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  8 in total

1.  Community dynamics and sensitivity to model structure: towards a probabilistic view of process-based model predictions.

Authors:  Clement Aldebert; Daniel B Stouffer
Journal:  J R Soc Interface       Date:  2018-12-05       Impact factor: 4.118

2.  Quantifying uncertainty in partially specified biological models: how can optimal control theory help us?

Authors:  M W Adamson; A Y Morozov; O A Kuzenkov
Journal:  Proc Math Phys Eng Sci       Date:  2016-09       Impact factor: 2.704

3.  Towards a simplification of models using regression trees.

Authors:  Y Eynaud; D Nerini; M Baklouti; J-C Poggiale
Journal:  J R Soc Interface       Date:  2013-02       Impact factor: 4.118

4.  Computational ecology as an emerging science.

Authors:  Sergei Petrovskii; Natalia Petrovskaya
Journal:  Interface Focus       Date:  2012-01-05       Impact factor: 3.906

5.  Defining and detecting structural sensitivity in biological models: developing a new framework.

Authors:  M W Adamson; A Yu Morozov
Journal:  J Math Biol       Date:  2014-01-22       Impact factor: 2.259

6.  Temperature-dependent virus lifecycle choices may reveal and predict facets of the biology of opportunistic pathogenic bacteria.

Authors:  Halil I Egilmez; Andrew Yu Morozov; Martha R J Clokie; Jinyu Shan; Andrey Letarov; Edouard E Galyov
Journal:  Sci Rep       Date:  2018-06-25       Impact factor: 4.379

7.  Bifurcation analysis of the predator-prey model with the Allee effect in the predator.

Authors:  Deeptajyoti Sen; Saktipada Ghorai; Malay Banerjee; Andrew Morozov
Journal:  J Math Biol       Date:  2021-12-30       Impact factor: 2.259

8.  Feeding on multiple sources: towards a universal parameterization of the functional response of a generalist predator allowing for switching.

Authors:  Andrew Morozov; Sergei Petrovskii
Journal:  PLoS One       Date:  2013-09-25       Impact factor: 3.240

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.