Literature DB >> 21636902

Structure of human R-state aquomethemoglobin at 2.0 Å resolution.

Jun Yi1, Leonard M Thomas, George B Richter-Addo.   

Abstract

The crystal structure of tetrameric (αβ)(2) R-state human adult aquomethemoglobin is reported at 2.0 Å resolution. The asymmetric unit contained one αβ subunit pair. The R-state crystal belonged to space group P4(1)2(1)2, with unit-cell parameters a = b = 53.6, c = 192.8 Å. An Fe-bound water molecule was modeled into the heme distal pockets of each of the α and β subunits. In the α subunit, a highly ordered liganded water was modeled with an Fe-O(water) distance of 2.2 Å and appears to be protected against escape from the distal pocket by the conformation of the heme propionate groups, which point upwards towards the distal His58 residue aided by a hydrogen-bonding network involving the solvent. In the β subunit, the liganded water exhibited greater motion and was modeled with a longer Fe-O(water) distance of 2.5 Å; in this subunit both propionate groups point downwards away from the distal His63 residue, presumably allowing greater motion of the liganded water in and out of the distal pocket.

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Year:  2011        PMID: 21636902      PMCID: PMC3107133          DOI: 10.1107/S1744309111012528

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  24 in total

1.  ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL.

Authors:  J MONOD; J WYMAN; J P CHANGEUX
Journal:  J Mol Biol       Date:  1965-05       Impact factor: 5.469

2.  [Hemoglobin formation by benzoylphenylhydroxylamine].

Authors:  M KIESE; K H PLATTIG
Journal:  Naunyn Schmiedebergs Arch Exp Pathol Pharmakol       Date:  1959

3.  The structure of horse methaemoglobin at 2-0 A resolution.

Authors:  R C Ladner; E J Heidner; M F Perutz
Journal:  J Mol Biol       Date:  1977-08-15       Impact factor: 5.469

4.  Interaction between cytochrome b5 and human methemoglobin.

Authors:  M R Mauk; A G Mauk
Journal:  Biochemistry       Date:  1982-09-14       Impact factor: 3.162

5.  Structure of human carbonmonoxyhemoglobin at 2.16 A: a snapshot of the allosteric transition.

Authors:  Martin K Safo; James C Burnett; Faik N Musayev; Samuel Nokuri; Donald J Abraham
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-11-23

6.  A pH-dependent aquomet-to-hemichrome transition in crystalline horse methemoglobin.

Authors:  Victoria L Robinson; Benjamin B Smith; Arthur Arnone
Journal:  Biochemistry       Date:  2003-09-02       Impact factor: 3.162

7.  The nitrite anion binds to human hemoglobin via the uncommon O-nitrito mode.

Authors:  Jun Yi; Martin K Safo; George B Richter-Addo
Journal:  Biochemistry       Date:  2008-07-17       Impact factor: 3.162

8.  Species comparison of methemoglobin reductase.

Authors:  Gary A Rockwood; Kevin R Armstrong; Steven I Baskin
Journal:  Exp Biol Med (Maywood)       Date:  2003-01

9.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

10.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21
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