Literature DB >> 12939139

A pH-dependent aquomet-to-hemichrome transition in crystalline horse methemoglobin.

Victoria L Robinson1, Benjamin B Smith, Arthur Arnone.   

Abstract

In 1947, Perutz and co-workers reported that crystalline horse methemoglobin undergoes a large lattice transition as the pH is decreased from 7.1 to 5.4. We have determined the pH 7.1 and 5.4 crystal structures of horse methemoglobin at 1.6 and 2.1 A resolution, respectively, and find that this lattice transition involves a 23 A translation of adjacent hemoglobin tetramers as well as changes in alpha heme ligation and the tertiary structure of the alpha subunits. Specifically, when the pH is lowered from 7.1 to 5.4, the Fe(3+) alpha heme groups (but not the beta heme groups) are converted from the aquomet form, in which the proximal histidine [His87(F8)alpha] and a water molecule are the axial heme ligands, to the hemichrome (bishistidine) form, in which the proximal histidine and the distal histidine [His58(E7)alpha] are the axial heme ligands. Hemichrome formation is coupled to a large tertiary structure transition in the eight-residue segment Pro44(CD2)alpha-Gly51(D7)alpha that converts from an extended loop structure at pH 7.1 to a pi-like helix at pH 5.4. The formation of the pi helix forces Phe46(CD4)alpha out of the alpha heme pocket and into the interface between adjacent hemoglobin tetramers where it participates in crystal lattice contacts unique to the pH 5.4 structure. In addition, the transition from aquomet alpha subunits to bishistidine alpha subunits is accompanied by an approximately 1.2 A movement of the alpha heme groups to a more solvent-exposed position as well as the creation of a solvent channel from the interior of the alpha heme pocket to the outside of the tetramer. These changes and the extensive rearrangement of the crystal lattice structure allow the alpha heme group of one tetramer to make direct contact with an alpha heme group on an adjacent tetramer. These results suggest possible functional roles for hemichrome formation in vivo.

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Year:  2003        PMID: 12939139     DOI: 10.1021/bi030059t

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  14 in total

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Review 3.  Structure and reactivity of hexacoordinate hemoglobins.

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4.  Combining solution wide-angle X-ray scattering and crystallography: determination of molecular envelope and heavy-atom sites.

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Journal:  J Appl Crystallogr       Date:  2009-02-07       Impact factor: 3.304

5.  Purification, crystallization and preliminary crystallographic studies of haemoglobin from mongoose (Helogale parvula) in two different crystal forms induced by pH variation.

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6.  Crystallographic trapping of heme loss intermediates during the nitrite-induced degradation of human hemoglobin.

Authors:  Jun Yi; Leonard M Thomas; Faik N Musayev; Martin K Safo; George B Richter-Addo
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7.  Hemoglobin: Some (Dis)Assembly Required.

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8.  Two-step counterdiffusion protocol for the crystallization of haemoglobin II from Lucina pectinata in the pH range 4-9.

Authors:  Carlos A Nieves-Marrero; Carlos R Ruiz-Martínez; Rafael A Estremera-Andújar; Luis A González-Ramírez; Juan López-Garriga; José A Gavira
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-02-24

9.  A cis-proline in alpha-hemoglobin stabilizing protein directs the structural reorganization of alpha-hemoglobin.

Authors:  David A Gell; Liang Feng; Suiping Zhou; Philip D Jeffrey; Katerina Bendak; Andrew Gow; Mitchell J Weiss; Yigong Shi; Joel P Mackay
Journal:  J Biol Chem       Date:  2009-08-25       Impact factor: 5.157

10.  Structure-function analyses reveal key features in Staphylococcus aureus IsdB-associated unfolding of the heme-binding pocket of human hemoglobin.

Authors:  Catherine F M Bowden; Anson C K Chan; Emily J W Li; Angelé L Arrieta; Lindsay D Eltis; Michael E P Murphy
Journal:  J Biol Chem       Date:  2017-11-06       Impact factor: 5.157

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