Literature DB >> 21636311

Reconstruction of scattered data in fetal diffusion MRI.

Estanislao Oubel1, Mériam Koob, Colin Studholme, Jean-Louis Dietemann, François Rousseau.   

Abstract

In this paper we present a method for reconstructing diffusion-weighted MRI data on regular grids from scattered data. The proposed method has the advantage that no specific diffusion model needs to be assumed. Previous work assume the tensor model, but this is not suitable under certain conditions like intravoxel orientational heterogeneity (IVOH). Data reconstruction is particularly important when studying the fetal brain in utero, since registration methods applied for movement and distortion correction produce scattered data in spatial and diffusion domains. We propose the use of a groupwise registration method, and a dual spatio-angular interpolation by using radial basis functions (RBF). Leave-one-out experiments performed on adult data showed a high accuracy of the method. The application to fetal data showed an improvement in the quality of the sequences according to objective criteria based on fractional anisotropy (FA) maps, and differences in the tractography results.
Copyright © 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 21636311      PMCID: PMC3682117          DOI: 10.1016/j.media.2011.04.004

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  34 in total

1.  Diffusion-weighted imaging of the fetal brain in vivo.

Authors:  Dong-Hyun Kim; Sungwon Chung; Daniel B Vigneron; A James Barkovich; Orit A Glenn
Journal:  Magn Reson Med       Date:  2008-01       Impact factor: 4.668

2.  The B-matrix must be rotated when correcting for subject motion in DTI data.

Authors:  Alexander Leemans; Derek K Jones
Journal:  Magn Reson Med       Date:  2009-06       Impact factor: 4.668

Review 3.  Insights from in vitro fetal magnetic resonance imaging of cerebral development.

Authors:  Ivica Kostovic; Lana Vasung
Journal:  Semin Perinatol       Date:  2009-08       Impact factor: 3.300

4.  Microstructural development of human brain assessed in utero by diffusion tensor imaging.

Authors:  Tony Bui; Jean-Luc Daire; François Chalard; Isabelle Zaccaria; Corinne Alberti; Monique Elmaleh; Catherine Garel; Dominique Luton; Nathalie Blanc; Guy Sebag
Journal:  Pediatr Radiol       Date:  2006-09-08

5.  Optimum b value for resolving crossing fibers: a study with standard clinical b value using 1.5-T MR.

Authors:  Kentaro Akazawa; Kei Yamada; Shigenori Matsushima; Mariko Goto; Sachiko Yuen; Tsunehiko Nishimura
Journal:  Neuroradiology       Date:  2010-03-23       Impact factor: 2.804

6.  Microstructural correlates of infant functional development: example of the visual pathways.

Authors:  Jessica Dubois; Ghislaine Dehaene-Lambertz; Catherine Soarès; Yann Cointepas; Denis Le Bihan; Lucie Hertz-Pannier
Journal:  J Neurosci       Date:  2008-02-20       Impact factor: 6.167

7.  In utero tractography of fetal white matter development.

Authors:  Gregor Kasprian; Peter C Brugger; Michael Weber; Martin Krssák; Elisabeth Krampl; Christian Herold; Daniela Prayer
Journal:  Neuroimage       Date:  2008-07-23       Impact factor: 6.556

8.  Correction of susceptibility artifacts in diffusion tensor data using non-linear registration.

Authors:  D Merhof; G Soza; A Stadlbauer; G Greiner; C Nimsky
Journal:  Med Image Anal       Date:  2007-06-09       Impact factor: 8.545

9.  Intersection based motion correction of multislice MRI for 3-D in utero fetal brain image formation.

Authors:  Kio Kim; Piotr A Habas; Francois Rousseau; Orit A Glenn; Anthony J Barkovich; Colin Studholme
Journal:  IEEE Trans Med Imaging       Date:  2009-09-09       Impact factor: 10.048

10.  Diffusion tensor imaging with tract-based spatial statistics reveals local white matter abnormalities in preterm infants.

Authors:  Mustafa Anjari; Latha Srinivasan; Joanna M Allsop; Joseph V Hajnal; Mary A Rutherford; A David Edwards; Serena J Counsell
Journal:  Neuroimage       Date:  2007-02-08       Impact factor: 6.556

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  25 in total

Review 1.  Mapping the developing human brain in utero using quantitative MR imaging techniques.

Authors:  Colin Studholme
Journal:  Semin Perinatol       Date:  2015-03       Impact factor: 3.300

Review 2.  Quantifying and modelling tissue maturation in the living human fetal brain.

Authors:  Colin Studholme; François Rousseau
Journal:  Int J Dev Neurosci       Date:  2013-07-03       Impact factor: 2.457

3.  Automatic, Age Consistent Reconstruction of the Corpus Callosum Guided by Coherency From In Utero Diffusion-Weighted MRI.

Authors:  David Hunt; Manjiri Dighe; Christopher Gatenby; Colin Studholme
Journal:  IEEE Trans Med Imaging       Date:  2019-08-02       Impact factor: 10.048

4.  Motion-Robust Diffusion-Weighted Brain MRI Reconstruction Through Slice-Level Registration-Based Motion Tracking.

Authors:  Bahram Marami; Benoit Scherrer; Onur Afacan; Burak Erem; Simon K Warfield; Ali Gholipour
Journal:  IEEE Trans Med Imaging       Date:  2016-10       Impact factor: 10.048

Review 5.  Fetal brain growth portrayed by a spatiotemporal diffusion tensor MRI atlas computed from in utero images.

Authors:  Shadab Khan; Lana Vasung; Bahram Marami; Caitlin K Rollins; Onur Afacan; Cynthia M Ortinau; Edward Yang; Simon K Warfield; Ali Gholipour
Journal:  Neuroimage       Date:  2018-08-30       Impact factor: 6.556

Review 6.  Challenges and Opportunities in Connectome Construction and Quantification in the Developing Human Fetal Brain.

Authors:  David Hunt; Manjiri Dighe; Christopher Gatenby; Colin Studholme
Journal:  Top Magn Reson Imaging       Date:  2019-10

7.  MRI of the foetal brain using a rapid 3D steady-state sequence.

Authors:  P D Griffiths; D Jarvis; H McQuillan; F Williams; M Paley; P Armitage
Journal:  Br J Radiol       Date:  2013-10       Impact factor: 3.039

8.  Temporal slice registration and robust diffusion-tensor reconstruction for improved fetal brain structural connectivity analysis.

Authors:  Bahram Marami; Seyed Sadegh Mohseni Salehi; Onur Afacan; Benoit Scherrer; Caitlin K Rollins; Edward Yang; Judy A Estroff; Simon K Warfield; Ali Gholipour
Journal:  Neuroimage       Date:  2017-04-19       Impact factor: 6.556

9.  Fetal MRI: A Technical Update with Educational Aspirations.

Authors:  Ali Gholipour; Judith A Estroff; Carol E Barnewolt; Richard L Robertson; P Ellen Grant; Borjan Gagoski; Simon K Warfield; Onur Afacan; Susan A Connolly; Jeffrey J Neil; Adam Wolfberg; Robert V Mulkern
Journal:  Concepts Magn Reson Part A Bridg Educ Res       Date:  2014-11       Impact factor: 0.481

10.  A unified approach to diffusion direction sensitive slice registration and 3-D DTI reconstruction from moving fetal brain anatomy.

Authors:  Mads Fogtmann; Sharmishtaa Seshamani; Christopher Kroenke; Teresa Chapman; Jakob Wilm; Francois Rousseau; Colin Studholme
Journal:  IEEE Trans Med Imaging       Date:  2013-09-30       Impact factor: 10.048

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