Literature DB >> 21632774

IMGT/3Dstructure-DB: querying the IMGT database for 3D structures in immunology and immunoinformatics (IG or antibodies, TR, MH, RPI, and FPIA).

François Ehrenmann1, Marie-Paule Lefranc.   

Abstract

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Year:  2011        PMID: 21632774     DOI: 10.1101/pdb.prot5637

Source DB:  PubMed          Journal:  Cold Spring Harb Protoc        ISSN: 1559-6095


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  22 in total

1.  Antibody humanization by structure-based computational protein design.

Authors:  Yoonjoo Choi; Casey Hua; Charles L Sentman; Margaret E Ackerman; Chris Bailey-Kellogg
Journal:  MAbs       Date:  2015-08-07       Impact factor: 5.857

2.  A study of CDR3 loop dynamics reveals distinct mechanisms of peptide recognition by T-cell receptors exhibiting different levels of cross-reactivity.

Authors:  Yuko Tsuchiya; Yoshiki Namiuchi; Hiroshi Wako; Hiromichi Tsurui
Journal:  Immunology       Date:  2017-11-08       Impact factor: 7.397

3.  IMGT® Immunoinformatics Tools for Standardized V-DOMAIN Analysis.

Authors:  Véronique Giudicelli; Patrice Duroux; Maël Rollin; Safa Aouinti; Géraldine Folch; Joumana Jabado-Michaloud; Marie-Paule Lefranc; Sofia Kossida
Journal:  Methods Mol Biol       Date:  2022

4.  IMGT/3Dstructure-DB: T-Cell Receptor TR Paratope and Peptide/Major Histocompatibility pMH Contact Sites and Epitope.

Authors:  Marie-Paule Lefranc; Gérard Lefranc
Journal:  Methods Mol Biol       Date:  2022

5.  De novo oligoclonal expansions of circulating plasmablasts in active and relapsing IgG4-related disease.

Authors:  Hamid Mattoo; Vinay S Mahajan; Emanuel Della-Torre; Yurie Sekigami; Mollie Carruthers; Zachary S Wallace; Vikram Deshpande; John H Stone; Shiv Pillai
Journal:  J Allergy Clin Immunol       Date:  2014-05-06       Impact factor: 10.793

6.  Conformational epitope matching and prediction based on protein surface spiral features.

Authors:  Ying-Tsang Lo; Tao-Chuan Shih; Tun-Wen Pai; Li-Ping Ho; Jen-Leih Wu; Hsin-Yiu Chou
Journal:  BMC Genomics       Date:  2021-05-31       Impact factor: 3.969

7.  IMGT/Collier-de-Perles: a two-dimensional visualization tool for amino acid domain sequences.

Authors:  Dimitrios Vlachakis; Christos Feidakis; Vasileios Megalooikonomou; Sophia Kossida
Journal:  Theor Biol Med Model       Date:  2013-02-21       Impact factor: 2.432

8.  Diversity, molecular characterization and expression of T cell receptor γ in a teleost fish, the sea bass (Dicentrarchus labrax, L).

Authors:  Francesco Buonocore; Rosario Castro; Elisa Randelli; Marie-Paule Lefranc; Adrien Six; Heiner Kuhl; Richard Reinhardt; Angelo Facchiano; Pierre Boudinot; Giuseppe Scapigliati
Journal:  PLoS One       Date:  2012-10-25       Impact factor: 3.240

9.  MAPs: a database of modular antibody parts for predicting tertiary structures and designing affinity matured antibodies.

Authors:  Robert J Pantazes; Costas D Maranas
Journal:  BMC Bioinformatics       Date:  2013-05-30       Impact factor: 3.169

10.  MH2c: Characterization of major histocompatibility α-helices - an information criterion approach.

Authors:  B Hischenhuber; F Frommlet; W Schreiner; B Knapp
Journal:  Comput Phys Commun       Date:  2012-07       Impact factor: 4.390

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