Literature DB >> 21626259

Vibrational dynamics of bio- and nano-filaments in viscous solution subjected to ultrasound: implications for microtubules.

Abdorreza Samarbakhsh1, Jack A Tuszynski.   

Abstract

In this paper, using a new analytical method, we solved the beam equation for a uniform bio- and nano-filament in a viscous solution. The filament is assumed to be attached at its two ends and driven by ultrasound plane waves. To obtain analytical solutions, we converted the beam equation to an equation that allows us the use of the method of separation of variables. We then reconstructed the solution of the original beam equation from the solution of the converted equation. Subsequently, we have used the parametric equations derived in this paper to investigate the resonance condition for a microtubule (MT) in an aqueous solution. We show that by using ultrasound plane waves, one cannot satisfy a resonance condition for MTs treated as rigid rods. In order to achieve resonance, a single mode of the MT vibration must be excited with a harmonic number larger than a threshold value found here. Single mode excitation not only helps to transfer a minimum amount of energy to the surrounding medium compared with multi-mode excitation, but it also allows for a simultaneous high amplitude and high mode quality that is impossible using plane waves. In order to overcome this difficulty, we propose to use an ultrasound generation device as a potential technical solution characterized by both frequency control and optimized energy transfer to the MT. Finally, the minimum required intensity of the ultrasound at the location of the MT in order to break it is shown to be on the order of 10(5) W/m(2), which corresponds to 170 dB.

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Year:  2011        PMID: 21626259     DOI: 10.1007/s00249-011-0709-0

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  14 in total

1.  Generation and control of sound bullets with a nonlinear acoustic lens.

Authors:  Alessandro Spadoni; Chiara Daraio
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-05       Impact factor: 11.205

2.  Optical trapping.

Authors:  Keir C Neuman; Steven M Block
Journal:  Rev Sci Instrum       Date:  2004-09       Impact factor: 1.523

3.  Ultrasonically induced alterations of cultured tumour cells.

Authors:  I Hrazdira; J Skorpíková; M Dolníková
Journal:  Eur J Ultrasound       Date:  1998-09

Review 4.  A review of in vitro bioeffects of inertial ultrasonic cavitation from a mechanistic perspective.

Authors:  M W Miller; D L Miller; A A Brayman
Journal:  Ultrasound Med Biol       Date:  1996       Impact factor: 2.998

5.  Flexural rigidity of individual microtubules measured by a buckling force with optical traps.

Authors:  Mahito Kikumoto; Masashi Kurachi; Valer Tosa; Hideo Tashiro
Journal:  Biophys J       Date:  2005-12-09       Impact factor: 4.033

6.  Cancer physics: diagnostics based on damped cellular elastoelectrical vibrations in microtubules.

Authors:  Jiří Pokorný; Clarbruno Vedruccio; Michal Cifra; Ondřej Kučera
Journal:  Eur Biophys J       Date:  2011-03-11       Impact factor: 1.733

7.  Buckling of a single microtubule by optical trapping forces: direct measurement of microtubule rigidity.

Authors:  M Kurachi; M Hoshi; H Tashiro
Journal:  Cell Motil Cytoskeleton       Date:  1995

8.  Viscous drag effect in the flexural rigidity and cantilever stiffness of bio- and nano-filaments measured with the shooting-bead method.

Authors:  Abdorreza Samarbakhsh; Jack A Tuszynski
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-07-02

9.  Microtubule bending and breaking in living fibroblast cells.

Authors:  D J Odde; L Ma; A H Briggs; A DeMarco; M W Kirschner
Journal:  J Cell Sci       Date:  1999-10       Impact factor: 5.285

10.  Actomyosin-based retrograde flow of microtubules in the lamella of migrating epithelial cells influences microtubule dynamic instability and turnover and is associated with microtubule breakage and treadmilling.

Authors:  C M Waterman-Storer; E D Salmon
Journal:  J Cell Biol       Date:  1997-10-20       Impact factor: 10.539

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  3 in total

1.  Coupled oscillations of a protein microtubule immersed in cytoplasm: an orthotropic elastic shell modeling.

Authors:  Farhang Daneshmand; Marco Amabili
Journal:  J Biol Phys       Date:  2012-02-18       Impact factor: 1.365

2.  Calcium-independent disruption of microtubule dynamics by nanosecond pulsed electric fields in U87 human glioblastoma cells.

Authors:  Lynn Carr; Sylvia M Bardet; Ryan C Burke; Delia Arnaud-Cormos; Philippe Leveque; Rodney P O'Connor
Journal:  Sci Rep       Date:  2017-01-24       Impact factor: 4.379

3.  Electro-acoustic behavior of the mitotic spindle: a semi-classical coarse-grained model.

Authors:  Daniel Havelka; Ondřej Kučera; Marco A Deriu; Michal Cifra
Journal:  PLoS One       Date:  2014-01-30       Impact factor: 3.240

  3 in total

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