Literature DB >> 21622781

Methylotrophy in a lake: from metagenomics to single-organism physiology.

Ludmila Chistoserdova1.   

Abstract

This review provides a brief summary of ongoing studies in Lake Washington (Seattle, WA) directed at an understanding of the content and activities of microbial communities involved in methylotrophy. One of the findings from culture-independent approaches, including functional metagenomics, is the prominent presence of Methylotenera species in the site and their inferred activity in C(1) metabolism, highlighting the local environmental importance of this group. Comparative analyses of individual genomes of Methylophilaceae from Lake Washington provide insights into their genomic divergence and suggest significant metabolic flexibility.

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Year:  2011        PMID: 21622781      PMCID: PMC3147377          DOI: 10.1128/AEM.00314-11

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  46 in total

Review 1.  Microorganisms and climate change: terrestrial feedbacks and mitigation options.

Authors:  Brajesh K Singh; Richard D Bardgett; Pete Smith; Dave S Reay
Journal:  Nat Rev Microbiol       Date:  2010-11       Impact factor: 60.633

2.  Highly divergent genes for methanopterin-linked C1 transfer reactions in Lake Washington, assessed via metagenomic analysis and mRNA detection.

Authors:  Marina G Kalyuzhnaya; Sarah Bowerman; Olivier Nercessian; Mary E Lidstrom; Ludmila Chistoserdova
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

3.  Methylibium petroleiphilum gen. nov., sp. nov., a novel methyl tert-butyl ether-degrading methylotroph of the Betaproteobacteria.

Authors:  Cindy H Nakatsu; Krassimira Hristova; Satoshi Hanada; Xian-Ying Meng; Jessica R Hanson; Kate M Scow; Yoichi Kamagata
Journal:  Int J Syst Evol Microbiol       Date:  2006-05       Impact factor: 2.747

4.  High-resolution metagenomics targets specific functional types in complex microbial communities.

Authors:  Marina G Kalyuzhnaya; Alla Lapidus; Natalia Ivanova; Alex C Copeland; Alice C McHardy; Ernest Szeto; Asaf Salamov; Igor V Grigoriev; Dominic Suciu; Samuel R Levine; Victor M Markowitz; Isidore Rigoutsos; Susannah G Tringe; David C Bruce; Paul M Richardson; Mary E Lidstrom; Ludmila Chistoserdova
Journal:  Nat Biotechnol       Date:  2008-09       Impact factor: 54.908

Review 5.  Methanotrophic bacteria.

Authors:  R S Hanson; T E Hanson
Journal:  Microbiol Rev       Date:  1996-06

6.  Microbial diversity and biogeochemistry of the Guaymas Basin deep-sea hydrothermal plume.

Authors:  Gregory J Dick; Bradley M Tebo
Journal:  Environ Microbiol       Date:  2010-02-25       Impact factor: 5.491

7.  Distribution of tetrahydromethanopterin-dependent enzymes in methylotrophic bacteria and phylogeny of methenyl tetrahydromethanopterin cyclohydrolases.

Authors:  J A Vorholt; L Chistoserdova; S M Stolyar; R K Thauer; M E Lidstrom
Journal:  J Bacteriol       Date:  1999-09       Impact factor: 3.490

8.  Analysis of sMMO-containing type I methanotrophs in Lake Washington sediment.

Authors:  Ann J Auman; Mary E Lidstrom
Journal:  Environ Microbiol       Date:  2002-09       Impact factor: 5.491

9.  Asymmetric, bimodal trade-offs during adaptation of Methylobacterium to distinct growth substrates.

Authors:  Ming-Chun Lee; Hsin-Hung Chou; Christopher J Marx
Journal:  Evolution       Date:  2009-06-22       Impact factor: 3.694

10.  Genome of Methylobacillus flagellatus, molecular basis for obligate methylotrophy, and polyphyletic origin of methylotrophy.

Authors:  Ludmila Chistoserdova; Alla Lapidus; Cliff Han; Lynne Goodwin; Liz Saunders; Tom Brettin; Roxanne Tapia; Paul Gilna; Susan Lucas; Paul M Richardson; Mary E Lidstrom
Journal:  J Bacteriol       Date:  2007-04-06       Impact factor: 3.490

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  21 in total

1.  Characterization of bacterial diversity associated with deep sea ferromanganese nodules from the South China Sea.

Authors:  De-Chao Zhang; Yan-Xia Liu; Xin-Zheng Li
Journal:  J Microbiol       Date:  2015-08-27       Impact factor: 3.422

2.  Methylococcaceae are the dominant active aerobic methanotrophs in a Chinese tidal marsh.

Authors:  Yongcui Deng; Qian Gui; Marc Dumont; Cheng Han; Huan Deng; Juanli Yun; Wenhui Zhong
Journal:  Environ Sci Pollut Res Int       Date:  2018-11-08       Impact factor: 4.223

3.  Lanthanide-dependent alcohol dehydrogenases require an essential aspartate residue for metal coordination and enzymatic function.

Authors:  Nathan M Good; Matthias Fellner; Kemal Demirer; Jian Hu; Robert P Hausinger; N Cecilia Martinez-Gomez
Journal:  J Biol Chem       Date:  2020-05-04       Impact factor: 5.157

Review 4.  Lanthanides: New life metals?

Authors:  Ludmila Chistoserdova
Journal:  World J Microbiol Biotechnol       Date:  2016-06-29       Impact factor: 3.312

5.  Methane-fed microbial microcosms show differential community dynamics and pinpoint taxa involved in communal response.

Authors:  Igor Y Oshkin; David A C Beck; Andrew E Lamb; Veronika Tchesnokova; Gabrielle Benuska; Tami L McTaggart; Marina G Kalyuzhnaya; Svetlana N Dedysh; Mary E Lidstrom; Ludmila Chistoserdova
Journal:  ISME J       Date:  2014-10-21       Impact factor: 10.302

6.  Pyrroloquinoline Quinone Ethanol Dehydrogenase in Methylobacterium extorquens AM1 Extends Lanthanide-Dependent Metabolism to Multicarbon Substrates.

Authors:  Nathan M Good; Huong N Vu; Carly J Suriano; Gabriel A Subuyuj; Elizabeth Skovran; N Cecilia Martinez-Gomez
Journal:  J Bacteriol       Date:  2016-10-21       Impact factor: 3.490

7.  Insights into denitrification in Methylotenera mobilis from denitrification pathway and methanol metabolism mutants.

Authors:  Ildar Mustakhimov; Marina G Kalyuzhnaya; Mary E Lidstrom; Ludmila Chistoserdova
Journal:  J Bacteriol       Date:  2013-03-08       Impact factor: 3.490

8.  Methylamine utilization via the N-methylglutamate pathway in Methylobacterium extorquens PA1 involves a novel flow of carbon through C1 assimilation and dissimilation pathways.

Authors:  Dipti D Nayak; Christopher J Marx
Journal:  J Bacteriol       Date:  2014-09-15       Impact factor: 3.490

9.  Genomic Analysis of the Yet-Uncultured Binatota Reveals Broad Methylotrophic, Alkane-Degradation, and Pigment Production Capacities.

Authors:  Chelsea L Murphy; Andriy Sheremet; Peter F Dunfield; John R Spear; Ramunas Stepanauskas; Tanja Woyke; Mostafa S Elshahed; Noha H Youssef
Journal:  mBio       Date:  2021-05-18       Impact factor: 7.867

10.  A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between the Methylococcaceae and the Methylophilaceae.

Authors:  David A C Beck; Marina G Kalyuzhnaya; Stephanie Malfatti; Susannah G Tringe; Tijana Glavina Del Rio; Natalia Ivanova; Mary E Lidstrom; Ludmila Chistoserdova
Journal:  PeerJ       Date:  2013-02-19       Impact factor: 2.984

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