Literature DB >> 27357406

Lanthanides: New life metals?

Ludmila Chistoserdova1.   

Abstract

Lanthanides (Ln(3+)) that are Rare Earth Elements, until recently thought to be biologically inert, have recently emerged as essential metals for activity and expression of a special type of methanol dehydrogenase, XoxF. As XoxF enzyme homologs are encoded in a wide variety of microbes, including microbes active in important environmental processes such as methane and methanol metabolism, Ln(3+) may represent some of the key biogeochemical drivers in cycling of carbon and other elements. However, significant gaps in understanding the role of Ln(3+) in biological systems remain as the functions of most of the proteins potentially dependent of Ln(3+) and their roles in specific metabolic networks/respective biogeochemical cycles remain unknown. Moreover, enzymes dependent on Ln(3+) but not related to XoxF enzymes may exist, and these so far have not been recognized. Through connecting the recently uncovered genetic divergence and phylogenetic distribution of XoxF-like enzymes and through elucidation of their activities, metal and substrate specificities, along with the biological contexts of respective biochemical pathways, most parsimonious scenarios for their evolution could be uncovered. Generation of such data will firmly establish the role of Ln(3+) in the biochemistry of Life inhabiting this planet.

Entities:  

Keywords:  Lanthanides; Methanol dehydrogenase; XoxF

Mesh:

Substances:

Year:  2016        PMID: 27357406     DOI: 10.1007/s11274-016-2088-2

Source DB:  PubMed          Journal:  World J Microbiol Biotechnol        ISSN: 0959-3993            Impact factor:   3.312


  52 in total

1.  Highly divergent genes for methanopterin-linked C1 transfer reactions in Lake Washington, assessed via metagenomic analysis and mRNA detection.

Authors:  Marina G Kalyuzhnaya; Sarah Bowerman; Olivier Nercessian; Mary E Lidstrom; Ludmila Chistoserdova
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

Review 2.  The ethanol oxidation system and its regulation in Pseudomonas aeruginosa.

Authors:  Helmut Görisch
Journal:  Biochim Biophys Acta       Date:  2003-04-11

3.  XoxF Acts as the Predominant Methanol Dehydrogenase in the Type I Methanotroph Methylomicrobium buryatense.

Authors:  Frances Chu; Mary E Lidstrom
Journal:  J Bacteriol       Date:  2016-03-31       Impact factor: 3.490

4.  Molecular structure and gene analysis of Ce3+ -induced methanol dehydrogenase of Bradyrhizobium sp. MAFF211645.

Authors:  Nanung Agus Fitriyanto; Mako Fushimi; Mika Matsunaga; Ambar Pertiwiningrum; Tomonori Iwama; Keiichi Kawai
Journal:  J Biosci Bioeng       Date:  2011-02-19       Impact factor: 2.894

Review 5.  Lanthanide-binding peptides and the enzymes that Might Have Been.

Authors:  S Lim; S J Franklin
Journal:  Cell Mol Life Sci       Date:  2004-09       Impact factor: 9.261

Review 6.  The quinoprotein dehydrogenases for methanol and glucose.

Authors:  Christopher Anthony
Journal:  Arch Biochem Biophys       Date:  2004-08-01       Impact factor: 4.013

7.  The role of calcium in the hydrolysis of the organophosphate paraoxon by human serum A-esterase.

Authors:  J A Vitarius; L G Sultatos
Journal:  Life Sci       Date:  1995       Impact factor: 5.037

8.  The rare earth, scandium, causes antibiotic overproduction in Streptomyces spp.

Authors:  Keiichi Kawai; Guojun Wang; Susumu Okamoto; Kozo Ochi
Journal:  FEMS Microbiol Lett       Date:  2007-07-20       Impact factor: 2.742

9.  The structure of Bacillus subtilis pectate lyase in complex with calcium.

Authors:  R Pickersgill; J Jenkins; G Harris; W Nasser; J Robert-Baudouy
Journal:  Nat Struct Biol       Date:  1994-10

10.  Comparative transcriptomics in three Methylophilaceae species uncover different strategies for environmental adaptation.

Authors:  Alexey Vorobev; David A C Beck; Marina G Kalyuzhnaya; Mary E Lidstrom; Ludmila Chistoserdova
Journal:  PeerJ       Date:  2013-07-25       Impact factor: 2.984

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  29 in total

1.  Communal metabolism of methane and the rare Earth element switch.

Authors:  Zheng Yu; Ludmila Chistoserdova
Journal:  J Bacteriol       Date:  2017-06-19       Impact factor: 3.490

2.  Lanthanide-dependent alcohol dehydrogenases require an essential aspartate residue for metal coordination and enzymatic function.

Authors:  Nathan M Good; Matthias Fellner; Kemal Demirer; Jian Hu; Robert P Hausinger; N Cecilia Martinez-Gomez
Journal:  J Biol Chem       Date:  2020-05-04       Impact factor: 5.157

Review 3.  Bioinorganic insights of the PQQ-dependent alcohol dehydrogenases.

Authors:  Pedro D Sarmiento-Pavía; Martha E Sosa-Torres
Journal:  J Biol Inorg Chem       Date:  2021-02-19       Impact factor: 3.358

4.  A Mutagenic Screen Identifies a TonB-Dependent Receptor Required for the Lanthanide Metal Switch in the Type I Methanotroph "Methylotuvimicrobium buryatense" 5GB1C.

Authors:  Joseph D Groom; Stephanie M Ford; Mitchell W Pesesky; Mary E Lidstrom
Journal:  J Bacteriol       Date:  2019-07-10       Impact factor: 3.490

5.  Lanthanide-dependent cross-feeding of methane-derived carbon is linked by microbial community interactions.

Authors:  Sascha M B Krause; Timothy Johnson; Yasodara Samadhi Karunaratne; Yanfen Fu; David A C Beck; Ludmila Chistoserdova; Mary E Lidstrom
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-27       Impact factor: 11.205

6.  A Periplasmic Lanthanide Mediator, Lanmodulin, in Methylobacterium aquaticum Strain 22A.

Authors:  Yoshiko Fujitani; Takeshi Shibata; Akio Tani
Journal:  Front Microbiol       Date:  2022-06-23       Impact factor: 6.064

7.  Lanthanide-dependent coordination interactions in lanmodulin: a 2D IR and molecular dynamics simulations study.

Authors:  Stephanie Liu; Emily R Featherston; Joseph A Cotruvo; Carlos R Baiz
Journal:  Phys Chem Chem Phys       Date:  2021-10-06       Impact factor: 3.676

8.  Natural Selection in Synthetic Communities Highlights the Roles of Methylococcaceae and Methylophilaceae and Suggests Differential Roles for Alternative Methanol Dehydrogenases in Methane Consumption.

Authors:  Zheng Yu; David A C Beck; Ludmila Chistoserdova
Journal:  Front Microbiol       Date:  2017-12-05       Impact factor: 5.640

9.  Can tailored nanoceria act as a prebiotic? Report on improved lipid profile and gut microbiota in obese mice.

Authors:  Rostyslav Bubnov; Lidiia Babenko; Liudmyla Lazarenko; Maryna Kryvtsova; Oleksandr Shcherbakov; Nadiya Zholobak; Olga Golubnitschaja; Mykola Spivak
Journal:  EPMA J       Date:  2019-10-29       Impact factor: 6.543

10.  The effect of lanthanum on growth and gene expression in a facultative methanotroph.

Authors:  Andrew T Crombie
Journal:  Environ Microbiol       Date:  2021-08-12       Impact factor: 5.476

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